mRNA_Ecto-sp13_S_contig66916.17573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: D7FWX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX5_ECTSI) HSP 1 Score: 154 bits (389), Expect = 7.380e-45 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ
Sbjct: 173 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 253
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A7S1H297_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H297_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.300e-22 Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
Q+ MN +A+ GKKATD +++AQQ TAMQ+LQ QQQ + LQ QLYG Q +PWN G AYRIPD+N NL G+YQQGK N+Q
Sbjct: 90 QSVMNSIAESGKKATDVQMKSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QNTPWNVGFAYRIPDTNFNLQGSYQQGKTNVQ 169
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: B8CCD1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD1_THAPS) HSP 1 Score: 94.7 bits (234), Expect = 6.360e-22 Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
QT M+E AQ KK T+ V+++QQ STAMQ+LQ QQQ + LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+AN+Q
Sbjct: 151 QTVMSEFAQTTKKLTETQVKSSQQQSTAMQFLQHQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ 230
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A7S2KKJ0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KKJ0_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 9.250e-22 Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
Q+ M+E A KK T+ V+++QQ STAMQ+LQ QQQ + LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+ANLQ
Sbjct: 42 QSIMSEFATTHKKLTETQVKSSQQQSTAMQFLQHQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANLQ 121
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A835YIM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM6_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.360e-21 Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
Q+ MNE+AQR KKA DAA++AAQQ STAMQ+ QLYGG SPWNFG AYRIPD++INLSG YQQG+AN+Q
Sbjct: 176 QSTMNELAQRSKKAADAAIKAAQQQSTAMQFXXXXXXXXXXXXQQLYGGS-SPWNFGVAYRIPDTHINLSGNYQQGRANVQ 255
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A6V2EIW0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EIW0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.360e-21 Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
Q+ MN+MAQ KK D +++A Q STAMQYLQ QQQ + LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+ N Q
Sbjct: 190 QSVMNDMAQTSKKLIDVQMKSANQQSTAMQYLQQQQQMIQQLQMQLYG-QSSPWNVGLAYRIPDTNFNLQGSYQQGRGNFQ 269
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: B7G8P6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8P6_PHATC) HSP 1 Score: 91.3 bits (225), Expect = 2.650e-20 Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
Q+ MN +A+ +KA D + +AQQ TAMQ+LQ QQQ + LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+AN+Q
Sbjct: 195 QSVMNNIAESSRKAMDVQMNSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ 274
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A448Z9H7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9H7_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 9.970e-20 Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
QT MN +A+ G+KAT+ +++AQQ TAMQ+LQ + LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+AN+Q
Sbjct: 194 QTVMNRLAESGQKATEVQMKSAQQQQTAMQFLQXXXXMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ 273
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A7S0ACT7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ACT7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.860e-19 Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
Q+ MN++A KK D +++A++ TA+Q+LQ QQQ + LQ QLYG Q +PWN G AYRIPD+N NL G+YQQG+ NLQ
Sbjct: 6 QSVMNDVASTRKKLIDVQMKSAEKHQTALQFLQQQQQIIQQLQMQLYG-QTAPWNVGVAYRIPDTNFNLQGSYQQGRTNLQ 85
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A1E7FQ76_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQ76_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.010e-18 Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
Q+ MN +A+ KA D + +A Q TAMQ+LQ Q Q + LQ QLYG Q SPWN G AYRIPD+N NL G+YQQGK N+Q
Sbjct: 192 QSVMNRLAESSNKAQDIQISSASQQQTAMQFLQSQAQMIQQLQQQLYG-QASPWNVGVAYRIPDTNFNLQGSYQQGKTNVQ 271 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig66916.17573.1 >prot_Ecto-sp13_S_contig66916.17573.1 ID=prot_Ecto-sp13_S_contig66916.17573.1|Name=mRNA_Ecto-sp13_S_contig66916.17573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp MNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPback to top mRNA from alignment at Ecto-sp13_S_contig66916:43..670- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig66916.17573.1 ID=mRNA_Ecto-sp13_S_contig66916.17573.1|Name=mRNA_Ecto-sp13_S_contig66916.17573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=628bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66916:43..670- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66916:43..670- >mRNA_Ecto-sp13_S_contig66916.17573.1 ID=mRNA_Ecto-sp13_S_contig66916.17573.1|Name=mRNA_Ecto-sp13_S_contig66916.17573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66916:43..670- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |