mRNA_Ecto-sp13_S_contig66916.17573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66916.17573.1
Unique NamemRNA_Ecto-sp13_S_contig66916.17573.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: D7FWX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX5_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 7.380e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ
Sbjct:  173 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 253          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A7S1H297_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H297_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.300e-22
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            Q+ MN +A+ GKKATD  +++AQQ  TAMQ+LQ QQQ +  LQ QLYG Q +PWN G AYRIPD+N NL G+YQQGK N+Q
Sbjct:   90 QSVMNSIAESGKKATDVQMKSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QNTPWNVGFAYRIPDTNFNLQGSYQQGKTNVQ 169          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: B8CCD1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD1_THAPS)

HSP 1 Score: 94.7 bits (234), Expect = 6.360e-22
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            QT M+E AQ  KK T+  V+++QQ STAMQ+LQ QQQ +  LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+AN+Q
Sbjct:  151 QTVMSEFAQTTKKLTETQVKSSQQQSTAMQFLQHQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ 230          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A7S2KKJ0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KKJ0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.250e-22
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            Q+ M+E A   KK T+  V+++QQ STAMQ+LQ QQQ +  LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+ANLQ
Sbjct:   42 QSIMSEFATTHKKLTETQVKSSQQQSTAMQFLQHQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANLQ 121          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A835YIM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.360e-21
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            Q+ MNE+AQR KKA DAA++AAQQ STAMQ+             QLYGG  SPWNFG AYRIPD++INLSG YQQG+AN+Q
Sbjct:  176 QSTMNELAQRSKKAADAAIKAAQQQSTAMQFXXXXXXXXXXXXQQLYGGS-SPWNFGVAYRIPDTHINLSGNYQQGRANVQ 255          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A6V2EIW0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EIW0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.360e-21
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            Q+ MN+MAQ  KK  D  +++A Q STAMQYLQ QQQ +  LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+ N Q
Sbjct:  190 QSVMNDMAQTSKKLIDVQMKSANQQSTAMQYLQQQQQMIQQLQMQLYG-QSSPWNVGLAYRIPDTNFNLQGSYQQGRGNFQ 269          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: B7G8P6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8P6_PHATC)

HSP 1 Score: 91.3 bits (225), Expect = 2.650e-20
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            Q+ MN +A+  +KA D  + +AQQ  TAMQ+LQ QQQ +  LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+AN+Q
Sbjct:  195 QSVMNNIAESSRKAMDVQMNSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ 274          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A448Z9H7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9H7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.970e-20
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            QT MN +A+ G+KAT+  +++AQQ  TAMQ+LQ     +  LQ QLYG Q SPWN G AYRIPD+N NL G+YQQG+AN+Q
Sbjct:  194 QTVMNRLAESGQKATEVQMKSAQQQQTAMQFLQXXXXMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ 273          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A7S0ACT7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ACT7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.860e-19
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            Q+ MN++A   KK  D  +++A++  TA+Q+LQ QQQ +  LQ QLYG Q +PWN G AYRIPD+N NL G+YQQG+ NLQ
Sbjct:    6 QSVMNDVASTRKKLIDVQMKSAEKHQTALQFLQQQQQIIQQLQMQLYG-QTAPWNVGVAYRIPDTNFNLQGSYQQGRTNLQ 85          
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Match: A0A1E7FQ76_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQ76_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.010e-18
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 QTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ 243
            Q+ MN +A+   KA D  + +A Q  TAMQ+LQ Q Q +  LQ QLYG Q SPWN G AYRIPD+N NL G+YQQGK N+Q
Sbjct:  192 QSVMNRLAESSNKAQDIQISSASQQQTAMQFLQSQAQMIQQLQQQLYG-QASPWNVGVAYRIPDTNFNLQGSYQQGKTNVQ 271          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66916.17573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX5_ECTSI7.380e-45100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1H297_9STRA1.300e-2261.73Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
B8CCD1_THAPS6.360e-2262.96Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2KKJ0_9STRA9.250e-2261.73Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A835YIM6_9STRA1.360e-2162.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V2EIW0_9STRA2.360e-2161.73Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
B7G8P6_PHATC2.650e-2059.26Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A448Z9H7_9STRA9.970e-2058.02Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0ACT7_9STRA3.860e-1954.32Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1E7FQ76_9STRA1.010e-1856.79Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66916contigEcto-sp13_S_contig66916:43..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score152.5
Seed ortholog evalue8e-35
Seed eggNOG ortholog2880.D7FWX5
Model size243
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28Q14@1,2QWPT@2759
Cds size234
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.0380027-CDS-Ecto-sp13_S_contig66916:42..1651681463920.0380027-CDS-Ecto-sp13_S_contig66916:42..165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66916 43..165 -
1681463920.0520616-CDS-Ecto-sp13_S_contig66916:550..6611681463920.0520616-CDS-Ecto-sp13_S_contig66916:550..661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66916 551..661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.0639215-UTR-Ecto-sp13_S_contig66916:661..6701681463920.0639215-UTR-Ecto-sp13_S_contig66916:661..670Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66916 662..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66916.17573.1prot_Ecto-sp13_S_contig66916.17573.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66916 43..661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66916.17573.1

>prot_Ecto-sp13_S_contig66916.17573.1 ID=prot_Ecto-sp13_S_contig66916.17573.1|Name=mRNA_Ecto-sp13_S_contig66916.17573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSP
WNFGAAYRIPDSNINLSGTYQQGKANLQ
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mRNA from alignment at Ecto-sp13_S_contig66916:43..670-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66916.17573.1 ID=mRNA_Ecto-sp13_S_contig66916.17573.1|Name=mRNA_Ecto-sp13_S_contig66916.17573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=628bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66916:43..670- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGGCGATGAACGAGATGGCGCAGAGGGGCAAGAAGGCAACGGACGC GGCGGTACGAGCGGCGCAGCAGACGAGCACGGCCATGCAGTACTTGCAAA TGCAGCAGCAACAGCTTGCGGTGAGCGCAATGTTGCTGTCATGTGTGAAC TTAAATACCTCTCATTGGGGTTTGATGCACTGGGCTTCTCTCTGAGTTGT GTCCATATCACCATGTTAGACCAATCTTGTTGTAGCAATTGATACGCCTG TTTCTGGCACCTTAGTGCATGCTTGGACACCGCTACTGTACCATATGCAC GTTGGGGGGGACTGCCCCCAACGCCGTCAGGTTGAACTGGATGACGTTTT TGTTTTTTTTTGCTGTTTCCTTGCCATCGAGTGCCAAGTAGGTGAGTTTC TTACCAGTCAGCTCCATCGGGGGAAGCCTGACTCCCTTTCCGTTAACAAA CGGTTTCGTTTCATGTCGGTTGTTTTTTACTCCTATTTCGTTTTTTTTTC TTCAGGCGTTGCAGAACCAGCTGTACGGGGGCCAGCCTTCCCCATGGAAC TTCGGTGCTGCGTACCGTATCCCGGACTCCAACATCAACCTCTCCGGAAC GTACCAGCAGGGCAAGGCGAACCTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66916:43..670-

>mRNA_Ecto-sp13_S_contig66916.17573.1 ID=mRNA_Ecto-sp13_S_contig66916.17573.1|Name=mRNA_Ecto-sp13_S_contig66916.17573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66916:43..670- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGATGGCGCAGAGGGGCAAGAAGGCAACGGACGCGGCGGTACG
AGCGGCGCAGCAGACGAGCACGGCCATGCAGTACTTGCAAATGCAGCAGC
AACAGCTTGCGGCGTTGCAGAACCAGCTGTACGGGGGCCAGCCTTCCCCA
TGGAACTTCGGTGCTGCGTACCGTATCCCGGACTCCAACATCAACCTCTC
CGGAACGTACCAGCAGGGCAAGGCGAACCTCCAG
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