mRNA_Ecto-sp13_S_contig6691.17570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6691.17570.1
Unique NamemRNA_Ecto-sp13_S_contig6691.17570.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6691.17570.1 vs. uniprot
Match: A0A6H5LNS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNS9_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 1.330e-123
Identity = 328/398 (82.41%), Postives = 335/398 (84.17%), Query Frame = 3 
Query:    3 RSRSDSRPRRGPGPPPHGAWEANNNNMYNNRGDGRGPRGGEGFGGEGYGPPGERRQPPYGG-QQSQQDHWQADQWQPHPRHGPGADFPRFPPDDDLEAIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-----TKAAEVDPAVVAVAANLAPVCVSRQLLSEGAYRRLALARQAGDDVEAGLTFEPEEEYDDEKERGTGAGVKPKEEEGVNAGTAMGEGATPASGTEMDGGDNGCGDSINTTPAQLATDDXXXXXXXXXXXXXXXXXX------YGDLXXXXXXXXXXXXXXXXXXXXXXXXXXXQDGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGMAEEVSTRAVMNALKRLEAPIFIPAPPEASSVSLILGDISVGLPLNVLTAPETY 1160
            RSRSDSRP RGPGPPPHGAWEANNNNM NNRGDGR PRGGEGFGGE YGPPGERRQPPYGG QQSQQD WQADQWQPH +HGPG DFPRFP DDDLEAIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      TKAAEVDPAVVAVAANLAPVCVSRQLLSEGAYRRLALARQAGDDVEAGLTFEPEE YDDEKERG GA VKPKE+ GVNAGTAMG+GATPASGT MDGGDNG GD INTT AQLATDDXXXXXXXXXXXXXXXXXX      YGDL     XXXXXX  XXXXXXXXXXXXXXQ      XXXXX          XXX        GMAEEVSTRAVMNALKRLE PIFIPAPPEA+ VS +LG+ISVGLPL+VLTAPETY
Sbjct: 1300 RSRSDSRPLRGPGPPPHGAWEANNNNM-NNRGDGRAPRGGEGFGGERYGPPGERRQPPYGGHQQSQQDRWQADQWQPHSQHGPGGDFPRFPMDDDLEAIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAAEVDPAVVAVAANLAPVCVSRQLLSEGAYRRLALARQAGDDVEAGLTFEPEEGYDDEKERGAGADVKPKEQGGVNAGTAMGKGATPASGTGMDGGDNGYGDGINTTLAQLATDDXXXXXXXXXXXXXXXXXXXXXXXLYGDLYGGLDXXXXXXTDXXXXXXXXXXXXXXQXXX--XXXXXXVGEEDQGALNXXXALEAGGGDGMAEEVSTRAVMNALKRLEGPIFIPAPPEATPVSSMLGNISVGLPLDVLTAPETY 1694
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BLAST of mRNA_Ecto-sp13_S_contig6691.17570.1 vs. uniprot
Match: D8LPQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ7_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 5.890e-108
Identity = 276/374 (73.80%), Postives = 281/374 (75.13%), Query Frame = 3 
Query:   51 HGAWEANNNNMYNNRGDGRGPRGGEGFGGEGYGPPGERRQPPYGG-QQSQQDHWQADQWQPHPRHGPGADFPRFPPDDDLEAIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTKAAEVDPAVVAVAANLAPVCVSRQLLSEGAYRRLALARQAGDDVEAGLTFEPEEEYDDEKERGTGAGVKPKEEEGVNAGTAMGEGATPASGTEMDGGDNGCGDSINTTPAQLATDDXXXXXXXXXXXXXXXXXX---YGDLXXXXXXXXXXXXXXXXXXXXXXXXXXXQDGAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGMAEEVSTRAVMNALKRLEAPIFIPAPPEASSVSLILGDISVGLPLNVLTAPETY 1160
            HGAWEANNNN     GDGRGPRGGEGFGGEGYGPPGERRQPPYGG QQSQQD WQADQWQPHPRHGPG DFPRFPPDDDLEAIAE                                  AAEVDPAVVAVAANLAPVCVSRQLLSEGAYRRLALARQAGDDVEAGLTFEPEE YDDE+ERGTGAGVKPK                     EMDGGDNG GD INTTPAQLATD+  XXXXXXXXXXXXXXXX   YGDL               XXXXXXXXXXXX DGA   XXXXXXXXXXXXXXXXXXXXXXXXX GMAEEVSTRAVMNALKRLE PIFIPAPPEA+ VSL+LGDISVGLPLNVL+APETY
Sbjct: 1392 HGAWEANNNNXXXXXGDGRGPRGGEGFGGEGYGPPGERRQPPYGGHQQSQQDRWQADQWQPHPRHGPGGDFPRFPPDDDLEAIAE----------------------------------AAEVDPAVVAVAANLAPVCVSRQLLSEGAYRRLALARQAGDDVEAGLTFEPEEGYDDEEERGTGAGVKPKXXXXXXXXXXXXXXXXXXXXXEMDGGDNGYGDGINTTPAQLATDESGXXXXXXXXXXXXXXXXXXLYGDLYGGLDDDGGGGTDMDXXXXXXXXXXXXXDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGMAEEVSTRAVMNALKRLEGPIFIPAPPEATPVSLMLGDISVGLPLNVLSAPETY 1731
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6691.17570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LNS9_9PHAE1.330e-12382.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPQ7_ECTSI5.890e-10873.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6691contigEcto-sp13_S_contig6691:1796..5391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1964
Hectar predicted targeting categoryother localisation
Exons4
Cds size1086
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6691.17570.1prot_Ecto-sp13_S_contig6691.17570.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6691 2594..5311 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.9503667-UTR-Ecto-sp13_S_contig6691:1795..25931681463919.9503667-UTR-Ecto-sp13_S_contig6691:1795..2593Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6691 1796..2593 -
1681463920.0049365-UTR-Ecto-sp13_S_contig6691:5311..53911681463920.0049365-UTR-Ecto-sp13_S_contig6691:5311..5391Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6691 5312..5391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.9623938-CDS-Ecto-sp13_S_contig6691:2593..27161681463919.9623938-CDS-Ecto-sp13_S_contig6691:2593..2716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6691 2594..2716 -
1681463919.9730399-CDS-Ecto-sp13_S_contig6691:3147..37531681463919.9730399-CDS-Ecto-sp13_S_contig6691:3147..3753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6691 3148..3753 -
1681463919.983086-CDS-Ecto-sp13_S_contig6691:4210..45001681463919.983086-CDS-Ecto-sp13_S_contig6691:4210..4500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6691 4211..4500 -
1681463919.9935198-CDS-Ecto-sp13_S_contig6691:5244..53111681463919.9935198-CDS-Ecto-sp13_S_contig6691:5244..5311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6691 5245..5311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6691.17570.1

>prot_Ecto-sp13_S_contig6691.17570.1 ID=prot_Ecto-sp13_S_contig6691.17570.1|Name=mRNA_Ecto-sp13_S_contig6691.17570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=362bp
MYNNRGDGRGPRGGEGFGGEGYGPPGERRQPPYGGQQSQQDHWQADQWQP
HPRHGPGADFPRFPPDDDLEAIAEAEAAAQVAEAKAEAAAAAAASAAAVK
EEEEERTKAAEVDPAVVAVAANLAPVCVSRQLLSEGAYRRLALARQAGDD
VEAGLTFEPEEEYDDEKERGTGAGVKPKEEEGVNAGTAMGEGATPASGTE
MDGGDNGCGDSINTTPAQLATDDSGGGGGGSPDGAEEEDDLYGDLYGGLD
DDGGGGADMEGGGRNGGGGGGGQDGAGGDGGGVGEEGQGAGGLNGGGAVE
AGGGDGMAEEVSTRAVMNALKRLEAPIFIPAPPEASSVSLILGDISVGLP
LNVLTAPETYL*
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mRNA from alignment at Ecto-sp13_S_contig6691:1796..5391-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6691.17570.1 ID=mRNA_Ecto-sp13_S_contig6691.17570.1|Name=mRNA_Ecto-sp13_S_contig6691.17570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6691:1796..5391- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTTCCCGCTCCGACTCCCGGCCGCGCAGAGGTCCTGGCCCTCCTCCT
CACGGTGCATGGGAAGCAAACAACAACAATATGTACAACAACAGGGGAGA
CGGGCGAGGGCCAAGAGGAGGAGAAGGATTCGGCGGCGAGGGATACGGTG
AGGATTGCGTGGGCATTGTTTGGTTTGTTACAAAGCGGGGGAAAGTGGAA
ATGTCAACCTGATCCTTGCCTTGTGCTGCGTGGCGGTATACTCTGTCCTC
ACGCATACTTCCACCGGTGTCAGATGTCGGTATCGAAAGAACGCGGTACT
TGTCCCGCCGCTAGAATAGATACCGCTGCTTTTACTGTGTACCGGCTGTC
CTAATCGAAATACATGTTCAGGTTCCATGTGGACAATAGTCAGAGTCATA
AAGATAATGGTATAGAGCGTCGTATGTGTCGACGGGCCCCGCCAGTGAAC
ACTTGGTACACTGGACACAAATAAAGACGGTCTTATTAGAAATTGCAAAT
TGTGCTGTAGAGGACTGCAACGATCGATCACGTATGTACGTGACTTGTGC
TATTTGCGTGTCTCCGTGTACGCCCAGGTGAGTTGTACAGCAGGTATGAT
ACATTCGTGTCTCAGTTTTTTAGGTGGAGGCGAATGTGGTATCTATGCCG
CATTGTGGGTGATATTCTCCTTGGAGTCTGTACCAATGATGCGTCATACC
ACGATTTTACACCAAACGACGATACGTTTAACATTTCACAAGAGTCCTTA
GACTCACCCTATTCCAAAACTTGCGATAGTCTCAACGGTGATCATCAACG
ATAGCGGTTGTCCCTGGTTCCATGCTGCGCTCATTGACACGCGTCCCTTG
CTTTCTTCCGGGCTGCCCATCGTGATGACTTCCGCCGACAGGCCCCCCTG
GCGAGCGAAGACAGCCCCCCTACGGCGGTCAGCAGTCACAGCAAGATCAC
TGGCAGGCCGATCAGTGGCAGCCACACCCCCGGCACGGCCCCGGCGCCGA
CTTTCCGAGGTTCCCGCCGGATGATGACTTGGAGGCGATAGCGGAGGCGG
AAGCGGCGGCTCAAGTGGCCGAGGCGAAAGCGGAGGCGGCCGCGGCCGCT
GCAGCCTCCGCTGCCGCGGTGAAGGAGGAGGAGGAGGAGCGGACCAAGGC
GGCCGAGGTTGATCCTGCAGTTGTTGCCGTGGTGAGTTTCGTGCGACCCA
ACCTTGCCCGTCCTTGCAAGGAAAAGCGACGCCAGCTTTTCTTTGGCGCA
GCTCGGTTGCCGTTGACGCGACTCGCCAAAACACCTCACGTACTGCTGTG
CCTGTCTAGTCGACAGTATCGTTTTCGGCGTTCTTTGCTTTCGAGCTCAT
GCATGCATCTACGTGGGGTCTCTTGCAGCAAGTACGCTCGGACCACGCTC
GATGCTGATTTCCGCCACTTTGTAGCGCACCACCCTGTTGATAGTGCGGA
AGGCCAATATTTGGTACGAAACTTTTTATCAACACACGTGGCTGGCTGTC
TCGATTCCGTCGCCACGTTTCTTGTCAGAGTCAGTCTACCCCCAATACGT
CTTCATCTCATGTTCCCACCCAAAATCTCGTCTGTTCGTCCGCGTTCCCA
ACCGATCGTGTTTCGTTACGGAACGCAACGAAAAAAAGGCGGCCAACCTC
GCGCCGGTGTGCGTGTCACGGCAGCTGCTGTCGGAGGGCGCTTACCGCCG
CCTGGCCCTCGCGCGTCAAGCCGGAGATGATGTCGAGGCCGGGCTTACCT
TCGAACCGGAGGAGGAATACGACGACGAGAAGGAAAGGGGCACAGGGGCG
GGTGTAAAACCAAAGGAGGAGGAAGGCGTAAACGCCGGAACCGCCATGGG
CGAAGGGGCGACGCCTGCTAGCGGCACGGAGATGGACGGCGGTGACAACG
GCTGCGGGGACAGCATCAACACTACCCCGGCGCAGTTGGCCACGGACGAC
AGCGGCGGCGGCGGCGGCGGCTCTCCGGATGGCGCAGAAGAAGAGGACGA
CCTTTACGGCGATCTCTACGGCGGCCTGGACGACGACGGTGGCGGTGGTG
CTGACATGGAGGGCGGTGGCCGAAACGGCGGCGGAGGCGGGGGGGGTCAG
GACGGCGCGGGCGGCGATGGCGGCGGCGTGGGCGAGGAGGGCCAAGGTGC
CGGCGGGCTAAACGGAGGCGGTGCGGTGGAAGCAGGAGGAGGGGACGGTA
TGGCTGAGGAGGTCAGCACTCGTGCCGTTATGAACGCTCTTAAGGTGAGG
GAGGCAGGCGTGTCACTGCCGCTGTTGGCGGTGTAGAGATTTTACGAGGG
GATGCCAAGGCCTTGGTTTTTTTATGGACATTGTTTGCTTTCTTCTTGTA
CGGGTAGGTGCTGTCGAGTAACGCACACGCACGAGGTACTTGCTGTCCCG
TGGACATTCTAATCACATGCCTTTTAGCTGTGTGGTGGTGGTCCTACCAA
ACAAAGCTGTTGTGTTTGGCGTCAAGCACCGCTTCACGTTCCGCGCTGGC
GGCAGTGCGTGCTCGTGCTTGAAGCAGCTGGCTTCTGCAATCCAAGATGT
TGAAATGTTCCATCTCTTCATGAATTTGTCGACAACGAGCCCTCCTCCCA
CCCCCCGCCGCTAAATTTCCCTCACCCGATTGCCCCCCCTGTCCCCGTCC
CCATCCCCTCGCTCGATTAACGCAGAGATTGGAGGCCCCGATTTTCATCC
CTGCACCTCCAGAGGCTTCATCTGTGTCTTTGATATTGGGGGACATCTCT
GTTGGGCTTCCCCTCAATGTTTTAACGGCGCCCGAAACGTACCTTTAGTC
CCGAAATATCATATGATCAATCGATCCTCTCTGCTGGAGTTGCTACGGGG
GTGAAAGCCCTAGCCATCGCACCTTGGGTTTGAAAGGTTGCATCCCGAAG
GGGGGTGGGTGCTGTGTTTTCATCGGGTTGTAGTGCACCCGCCTCTGTGC
TGTTATCGTTTCCACGGTATATATTACGTTCTTCATGAACGGGTTTTTCG
TATACAGTACAAGGTAGTTTATATTTCTTTTTTCTGGGAGTCGGATTTGG
AGAATGTTTTCCGACCGGCCAAAAATAATGGTGGTAATCAGCATGTGTTG
GTTTTGGGAGGAAGACGTTTGATTTTTGTCTGGTGTGGTTGGAGGCGTGG
AGTAGCTGGCTTCTCTGGTGGTGGCAGGTACAGGGTGCAGGTCAATGTTT
TAGTGTTTGAGCGAAGCGTTTTTATCGAATCACAAGAAAGCTTGATGTGT
TATTTTTGGTAGAAGAAAGCAGGAGATTGGCACCGCTCCGACCTGAATCT
TGTCGGTTTGCTGTCTCACCTTTCCGGCAGTGCAAGCGGGTGCTTTGCTA
CATTTCATTACATTGGTGTGCCTTGGTGGCAGTAAACGGCGAGTTCTTCT
GCTAAGGTACATTGAAGTTCGGGCGTGAAAGCAAGGGACAGAGTGAAAGG
AGCATTTTGGTCGTTCGTCCGATGACGCGCGAAAAATTAGTTGCTCGTTC
AGATCGCCTCGTTCAAGAATGAATCAAATCATCAACATCATGTGTAGGTG
TTGCTTCTCTCTGGTTTCTTTGTCCAAGCGCAGTTCACAGCGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6691:1796..5391-

>mRNA_Ecto-sp13_S_contig6691.17570.1 ID=mRNA_Ecto-sp13_S_contig6691.17570.1|Name=mRNA_Ecto-sp13_S_contig6691.17570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6691:1796..5391- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAACAACAGGGGAGACGGGCGAGGGCCAAGAGGAGGAGAAGGATT
CGGCGGCGAGGGATACGGCCCCCCTGGCGAGCGAAGACAGCCCCCCTACG
GCGGTCAGCAGTCACAGCAAGATCACTGGCAGGCCGATCAGTGGCAGCCA
CACCCCCGGCACGGCCCCGGCGCCGACTTTCCGAGGTTCCCGCCGGATGA
TGACTTGGAGGCGATAGCGGAGGCGGAAGCGGCGGCTCAAGTGGCCGAGG
CGAAAGCGGAGGCGGCCGCGGCCGCTGCAGCCTCCGCTGCCGCGGTGAAG
GAGGAGGAGGAGGAGCGGACCAAGGCGGCCGAGGTTGATCCTGCAGTTGT
TGCCGTGGCGGCCAACCTCGCGCCGGTGTGCGTGTCACGGCAGCTGCTGT
CGGAGGGCGCTTACCGCCGCCTGGCCCTCGCGCGTCAAGCCGGAGATGAT
GTCGAGGCCGGGCTTACCTTCGAACCGGAGGAGGAATACGACGACGAGAA
GGAAAGGGGCACAGGGGCGGGTGTAAAACCAAAGGAGGAGGAAGGCGTAA
ACGCCGGAACCGCCATGGGCGAAGGGGCGACGCCTGCTAGCGGCACGGAG
ATGGACGGCGGTGACAACGGCTGCGGGGACAGCATCAACACTACCCCGGC
GCAGTTGGCCACGGACGACAGCGGCGGCGGCGGCGGCGGCTCTCCGGATG
GCGCAGAAGAAGAGGACGACCTTTACGGCGATCTCTACGGCGGCCTGGAC
GACGACGGTGGCGGTGGTGCTGACATGGAGGGCGGTGGCCGAAACGGCGG
CGGAGGCGGGGGGGGTCAGGACGGCGCGGGCGGCGATGGCGGCGGCGTGG
GCGAGGAGGGCCAAGGTGCCGGCGGGCTAAACGGAGGCGGTGCGGTGGAA
GCAGGAGGAGGGGACGGTATGGCTGAGGAGGTCAGCACTCGTGCCGTTAT
GAACGCTCTTAAGAGATTGGAGGCCCCGATTTTCATCCCTGCACCTCCAG
AGGCTTCATCTGTGTCTTTGATATTGGGGGACATCTCTGTTGGGCTTCCC
CTCAATGTTTTAACGGCGCCCGAAACGTACCTTTAG
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