prot_Ecto-sp13_S_contig66907.17568.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig66907.17568.1
Unique Nameprot_Ecto-sp13_S_contig66907.17568.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length76
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66907.17568.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.180e-33
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:   17 RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYV 76
            RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYV
Sbjct:  446 RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYV 505
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BLAST of mRNA_Ecto-sp13_S_contig66907.17568.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 4.900e-32
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0 
Query:   17 RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYV 76
            RSAEEAFRRSVEADPAYSEAWNGLGATMS +PLVQQHCWVRSVQLEHNPSAWANLGMLYV
Sbjct:  967 RSAEEAFRRSVEADPAYSEAWNGLGATMSGRPLVQQHCWVRSVQLEHNPSAWANLGMLYV 1026
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BLAST of mRNA_Ecto-sp13_S_contig66907.17568.1 vs. uniprot
Match: A0A293MWB5_ORNER (Tetratricopeptide repeat protein 37 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MWB5_ORNER)

HSP 1 Score: 53.5 bits (127), Expect = 1.840e-6
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 0 
Query:   24 RRSVEADPAYSEAWNGLGATMSQKPL----VQQHCWVRSVQLEH-NPSAWANLGMLYV 76
            +++V  +PA   AWN LG     K +    + QHC ++SVQLE  NP+AWANLG LY+
Sbjct:  489 QKAVSLNPADPAAWNMLGVVALAKDIKNGALAQHCLIKSVQLESCNPTAWANLGALYL 546
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66907.17568.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JG00_9PHAE2.180e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI4.900e-3296.67Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A293MWB5_ORNER1.840e-646.55Tetratricopeptide repeat protein 37 (Fragment) n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 5..76
e-value: 3.6E-6
score: 28.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 19..75
NoneNo IPR availablePANTHERPTHR15704:SF7TETRATRICOPEPTIDE REPEAT PROTEIN 37coord: 16..75
IPR039226Ski3/TTC37PANTHERPTHR15704SUPERKILLER 3 PROTEIN-RELATEDcoord: 16..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66907contigEcto-sp13_S_contig66907:460..687 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66907.17568.1mRNA_Ecto-sp13_S_contig66907.17568.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig66907 460..687 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig66907.17568.1 ID=prot_Ecto-sp13_S_contig66907.17568.1|Name=mRNA_Ecto-sp13_S_contig66907.17568.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MIITTSLSLNDHHVRIRSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLV
QQHCWVRSVQLEHNPSAWANLGMLYV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR039226Ski3/TTC37