mRNA_Ecto-sp13_S_contig66907.17568.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66907.17568.1
Unique NamemRNA_Ecto-sp13_S_contig66907.17568.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66907.17568.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.180e-33
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   49 RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYV 228
            RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYV
Sbjct:  446 RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYV 505
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BLAST of mRNA_Ecto-sp13_S_contig66907.17568.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 4.900e-32
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   49 RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYV 228
            RSAEEAFRRSVEADPAYSEAWNGLGATMS +PLVQQHCWVRSVQLEHNPSAWANLGMLYV
Sbjct:  967 RSAEEAFRRSVEADPAYSEAWNGLGATMSGRPLVQQHCWVRSVQLEHNPSAWANLGMLYV 1026
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BLAST of mRNA_Ecto-sp13_S_contig66907.17568.1 vs. uniprot
Match: A0A293MWB5_ORNER (Tetratricopeptide repeat protein 37 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MWB5_ORNER)

HSP 1 Score: 53.5 bits (127), Expect = 1.840e-6
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   70 RRSVEADPAYSEAWNGLGATMSQKPL----VQQHCWVRSVQLEH-NPSAWANLGMLYV 228
            +++V  +PA   AWN LG     K +    + QHC ++SVQLE  NP+AWANLG LY+
Sbjct:  489 QKAVSLNPADPAAWNMLGVVALAKDIKNGALAQHCLIKSVQLESCNPTAWANLGALYL 546
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66907.17568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JG00_9PHAE2.180e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI4.900e-3296.67Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A293MWB5_ORNER1.840e-646.55Tetratricopeptide repeat protein 37 (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66907contigEcto-sp13_S_contig66907:460..687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score124.8
Seed ortholog evalue1.7e-26
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
Model size228
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
Exons1
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
Cds size228
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.726505-CDS-Ecto-sp13_S_contig66907:459..6871681463919.726505-CDS-Ecto-sp13_S_contig66907:459..687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66907 460..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66907.17568.1prot_Ecto-sp13_S_contig66907.17568.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66907 460..687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66907.17568.1

>prot_Ecto-sp13_S_contig66907.17568.1 ID=prot_Ecto-sp13_S_contig66907.17568.1|Name=mRNA_Ecto-sp13_S_contig66907.17568.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MIITTSLSLNDHHVRIRSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLV
QQHCWVRSVQLEHNPSAWANLGMLYV
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mRNA from alignment at Ecto-sp13_S_contig66907:460..687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66907.17568.1 ID=mRNA_Ecto-sp13_S_contig66907.17568.1|Name=mRNA_Ecto-sp13_S_contig66907.17568.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66907:460..687+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTATCACAACCTCACTCTCGTTGAACGATCACCATGTTCGAATCAG
GTCGGCAGAGGAAGCCTTCAGGAGGTCAGTCGAGGCCGATCCCGCCTACT
CGGAAGCTTGGAACGGTCTGGGCGCCACCATGTCCCAGAAGCCCCTGGTG
CAGCAGCACTGCTGGGTTCGGTCGGTGCAGCTGGAGCACAATCCCAGCGC
GTGGGCTAACTTGGGCATGCTGTACGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66907:460..687+

>mRNA_Ecto-sp13_S_contig66907.17568.1 ID=mRNA_Ecto-sp13_S_contig66907.17568.1|Name=mRNA_Ecto-sp13_S_contig66907.17568.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66907:460..687+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTATCACAACCTCACTCTCGTTGAACGATCACCATGTTCGAATCAG
GTCGGCAGAGGAAGCCTTCAGGAGGTCAGTCGAGGCCGATCCCGCCTACT
CGGAAGCTTGGAACGGTCTGGGCGCCACCATGTCCCAGAAGCCCCTGGTG
CAGCAGCACTGCTGGGTTCGGTCGGTGCAGCTGGAGCACAATCCCAGCGC
GTGGGCTAACTTGGGCATGCTGTACGTC
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