mRNA_Ecto-sp13_S_contig667.17543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig667.17543.1
Unique NamemRNA_Ecto-sp13_S_contig667.17543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig667.17543.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.970e-35
Identity = 65/75 (86.67%), Postives = 66/75 (88.00%), Query Frame = 3 
Query:    3 GGQRRAFRLGGSPDEGGSCT-VITDLRQRASRCKGSSVGICRCSRRAYQGGEQQQGF-ARVGGRSRSPLGNGEKT 221
            GGQRR FRL GSPDEGGSCT VITDLRQRASRC+G SVGICRCSRRAYQGGEQ QGF   V GRSRSPLGNGEKT
Sbjct:    3 GGQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFFLPVVGRSRSPLGNGEKT 77
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BLAST of mRNA_Ecto-sp13_S_contig667.17543.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.270e-31
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 3 
Query:    3 GGQRRAFRLGGSPDEGGSCTVITDLRQRASRCKGSSVGICRCSRRAYQGGEQQQGFARVGGRSRSPLGNGEKTP 224
            GG  + F LGGS DEGGSC+VITDLRQRASRC+G SV ICRCSRRAYQGGEQQQG   VG  SRSPLGNG  TP
Sbjct:    5 GGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQGSLLVGWWSRSPLGNGVNTP 78
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BLAST of mRNA_Ecto-sp13_S_contig667.17543.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.230e-12
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   43 MKGGAAQ-SSQISANALPDVRGAVWAFVVVVGALTRVASSSR 165
            MKGGAAQ SSQISANALPDV GA WAFVVVVGALTRV SSSR
Sbjct:    1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSR 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig667.17543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR06_ECTSI5.970e-3586.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB56_9PHAE9.270e-3177.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGJ8_ECTSI1.230e-1290.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig667contigEcto-sp13_S_contig667:13202..13427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size226
Hectar predicted targeting categorysignal peptide
Exons1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.698647-CDS-Ecto-sp13_S_contig667:13201..134261681463917.698647-CDS-Ecto-sp13_S_contig667:13201..13426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig667 13202..13426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig667.17543.1prot_Ecto-sp13_S_contig667.17543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig667 13202..13426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig667.17543.1

>prot_Ecto-sp13_S_contig667.17543.1 ID=prot_Ecto-sp13_S_contig667.17543.1|Name=mRNA_Ecto-sp13_S_contig667.17543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
RGGSAGLFGWAVLQMKGGAAQSSQISANALPDVRGAVWAFVVVVGALTRV
ASSSRGLRGWVGGAGVHLAMERRPP
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mRNA from alignment at Ecto-sp13_S_contig667:13202..13427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig667.17543.1 ID=mRNA_Ecto-sp13_S_contig667.17543.1|Name=mRNA_Ecto-sp13_S_contig667.17543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=226bp|location=Sequence derived from alignment at Ecto-sp13_S_contig667:13202..13427+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGGGGCAGCGCAGGGCTTTTCGGTTGGGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACAGTCATCACAGATCTCCGCCAACGCGCTTCCAGATGTAA
GGGGAGCAGTGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTACCAGGGTG
GCGAGCAGCAGCAGGGGTTTGCGCGGGTGGGTGGGAGGAGCCGGAGTCCA
CTTGGCAATGGAGAGAAGACCCCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig667:13202..13427+

>mRNA_Ecto-sp13_S_contig667.17543.1 ID=mRNA_Ecto-sp13_S_contig667.17543.1|Name=mRNA_Ecto-sp13_S_contig667.17543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig667:13202..13427+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGGGGCAGCGCAGGGCTTTTCGGTTGGGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACAGTCATCACAGATCTCCGCCAACGCGCTTCCAGATGTAA
GGGGAGCAGTGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTACCAGGGTG
GCGAGCAGCAGCAGGGGTTTGCGCGGGTGGGTGGGAGGAGCCGGAGTCCA
CTTGGCAATGGAGAGAAGACCCCCG
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