prot_Ecto-sp13_S_contig667.17543.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig667.17543.1
Unique Nameprot_Ecto-sp13_S_contig667.17543.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length75
Homology
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BLAST of mRNA_Ecto-sp13_S_contig667.17543.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.230e-12
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   15 MKGGAAQ-SSQISANALPDVRGAVWAFVVVVGALTRVASSSR 55
            MKGGAAQ SSQISANALPDV GA WAFVVVVGALTRV SSSR
Sbjct:    1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSR 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig667.17543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGJ8_ECTSI1.230e-1290.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..75
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..52
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig667contigEcto-sp13_S_contig667:13202..13426 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig667.17543.1mRNA_Ecto-sp13_S_contig667.17543.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig667 13202..13427 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig667.17543.1 ID=prot_Ecto-sp13_S_contig667.17543.1|Name=mRNA_Ecto-sp13_S_contig667.17543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
RGGSAGLFGWAVLQMKGGAAQSSQISANALPDVRGAVWAFVVVVGALTRV
ASSSRGLRGWVGGAGVHLAMERRPP
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