mRNA_Ecto-sp13_S_contig6664.17536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6664.17536.1
Unique NamemRNA_Ecto-sp13_S_contig6664.17536.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: D7G3Y7_ECTSI (Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y7_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.120e-83
Identity = 135/151 (89.40%), Postives = 138/151 (91.39%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVYQGTSIFAEH LLDEPSGLCAFYGV+DNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLV+PSDEEL IWTRYRKG+VDAD LKALL K       EDGVRLG LSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATM R
Sbjct:   64 LKVYQGTSIFAEHPLLDEPSGLCAFYGVEDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSDEELEIWTRYRKGEVDADTLKALLAKA-----TEDGVRLGPLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMNR 209          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A8C4X2I9_ERPCA (Bardet-Biedl syndrome 1 n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4X2I9_ERPCA)

HSP 1 Score: 111 bits (278), Expect = 9.610e-26
Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKV++GTS+  E+ LLD P+GL AF+  Q+   T     PA+AVA+GP+I++YKNLRPYFKFT P ++ ++ E  +W++ R+  +D   LK +L  +  +A     V L   S  FL  + +D  SF++     +P+ R T+ITC+ T+K+
Sbjct:   61 LKVFKGTSLMTENTLLDLPTGLVAFHMDQNEPRT-----PAIAVASGPFIYVYKNLRPYFKFTLPPLEVNELEQEVWSQAREDKIDPMSLKEMLEGIRNKAQ----VPLSVRSLKFLMLEHQDMESFVNMH-KQQPIRRQTVITCIGTLKK 201          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A4W5K5E2_9TELE (Bardet-Biedl syndrome 1 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5K5E2_9TELE)

HSP 1 Score: 107 bits (268), Expect = 1.140e-25
Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVY+GT + +E+ LLD P+GL +F   Q    T     PA+AVA+GP+I++YKNLRPYFKFT P ++ +  E  +W + R+  +D   LK +L  +  +A     V L   S  FL  D +D  +F++   A +P+ R T+ITC+ T+K+
Sbjct:   69 LKVYRGTGLMSENTLLDLPTGLVSFLMDQHEPRT-----PAIAVASGPFIYVYKNLRPYFKFTLPPLEVNALEQDVWNQAREDMIDPLSLKEMLEGIRDKAD----VPLSVRSLRFLMLDPQDTEAFVNLHKA-QPIRRQTVITCIGTLKK 209          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A2I4CFM7_9TELE (Bardet-Biedl syndrome 1 protein n=2 Tax=Rivulidae TaxID=28771 RepID=A0A2I4CFM7_9TELE)

HSP 1 Score: 110 bits (275), Expect = 2.450e-25
Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVY+GT++ +E  LLD PSGL AF+      +      PAVAVA+GP I++YKNLRPYFKFT P ++ +  E  +W + R+G +D   LK +L  +  +    D + L   S  FL+ D+ D   F+      +P+ R T+ITC+ T+K+
Sbjct:   58 LKVYRGTALMSESVLLDLPSGLVAFF-----MDLHEPRIPAVAVASGPCIYVYKNLRPYFKFTLPSLEINPLEQDVWQQVREGQIDPMTLKEMLESIRKK----DDIPLSIRSLRFLSLDVNDMDEFVQLH-RQQPIKRQTVITCIGTLKK 198          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A6P8VJV3_GYMAC (Bardet-Biedl syndrome 1 protein n=2 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8VJV3_GYMAC)

HSP 1 Score: 108 bits (271), Expect = 8.640e-25
Identity = 62/151 (41.06%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVY+GT++ +E  LLD PSGL AF+      +      PAVAVA+GP +++YKNLRPYFKFT P ++ +  E  +W + R+G +D   LK +L  V   A     V L   S  FL+ D +D   F+      +P+ R T+ITC+ T+K+
Sbjct:   58 LKVYRGTALMSESSLLDLPSGLVAFF-----MDLHEPRIPAVAVASGPCVYVYKNLRPYFKFTLPGLRVNTLEQDVWRQVREGQIDPLTLKEMLESVRKTAD----VPLSVRSLRFLSLDTDDMDDFVQLH-KQQPIRRQTVITCIGTLKK 198          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A484C9H6_PERFV (BBS1 domain-containing protein n=5 Tax=Percidae TaxID=8165 RepID=A0A484C9H6_PERFV)

HSP 1 Score: 108 bits (270), Expect = 9.810e-25
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVY+GT++ +E  LLD PSGL AF+      +      PAVAVA+GP +++YKNLRPYFKFT P ++ +  E  +W + R+G +D   LK +L  +  +      V L   S  FL+ + ED   FL      +P+ R T+ITC+ T+K+
Sbjct:    3 LKVYRGTALMSESALLDLPSGLAAFF-----MDLHEPRVPAVAVASGPCVYVYKNLRPYFKFTLPGLEVNALEQDLWQQAREGQIDPVTLKEMLESIRKKVD----VPLSVRSLHFLSLETEDMDDFLQLH-KQQPIRRQTVITCIGTLKK 143          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A0S7GIJ0_9TELE (BBS1 n=3 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7GIJ0_9TELE)

HSP 1 Score: 104 bits (259), Expect = 9.850e-25
Identity = 58/151 (38.41%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVY+GT++ +E+ LLD P+GL AF+      +      PAVAVA+GP I++YKNLRPYFKFT P +  +  E  +W + R+G +D   LK +L  +  +A     + L   S  FL+ + ++   F+      +P+ R T+ITC+ T+K+
Sbjct:   58 LKVYRGTALISENSLLDLPAGLVAFF-----MDLHEPRIPAVAVASGPCIYVYKNLRPYFKFTLPSLDINPLEQDVWQQVREGQIDPVMLKEMLESIRKKAD----IPLSVRSIRFLSLESDEVDEFVQLY-KQQPIRRQTVITCIGTLKK 198          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A8C4AMS6_9TELE (Bardet-Biedl syndrome 1 n=5 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4AMS6_9TELE)

HSP 1 Score: 108 bits (270), Expect = 1.100e-24
Identity = 59/151 (39.07%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVY+GT + +E+ LLD P+GL +F   Q    T     PAVAVA+GP+I++YKNLRPYFKFT P ++ +  E  +W++ ++  +D   LK +L  +  +A     + L + S  FL  DL++  +F++     +P+ R T+ITC+ T+K+
Sbjct:   68 LKVYRGTGLLSENTLLDLPTGLVSFLMEQHEPRT-----PAVAVASGPFIYVYKNLRPYFKFTLPPLEVNPLEQDLWSQAKEDMIDPMSLKEMLESIRDKAD----IPLSARSLRFLMLDLQEMVTFVNLH-KEQPIRRQTVITCINTLKK 208          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: UPI0015AAB691 (Bardet-Biedl syndrome 1 protein n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI0015AAB691)

HSP 1 Score: 108 bits (270), Expect = 1.200e-24
Identity = 58/151 (38.41%), Postives = 95/151 (62.91%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVY+GTS+ +E+ LLD P+GL +F+  Q    T     PA+AVA+GP+I++YKNLRPYFKFT P ++ +  E  +W++ ++  +D   LK +L  +  +A     + L   S  FL  D ++  +F++     +P+ R T+ITC++T+K+
Sbjct:   63 LKVYRGTSMMSENTLLDLPTGLVSFFMDQHEPRT-----PAIAVASGPFIYVYKNLRPYFKFTLPTLEVNPLEQEVWSQAKEDMIDPLSLKEMLEGIRDKAD----IPLSVRSLKFLMLDPQEMEAFVNVH-KQQPIRRQTVITCISTLKK 203          
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: UPI0015531553 (Bardet-Biedl syndrome 1 protein isoform X1 n=2 Tax=Trachemys scripta elegans TaxID=31138 RepID=UPI0015531553)

HSP 1 Score: 104 bits (260), Expect = 1.420e-24
Identity = 57/151 (37.75%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
            LKVY+GT + +E  LLD PS +  F   Q+   T     PAVAV +GP++++YKNLRPYFKFT P +  +  EL +W + ++  +D   LK +L  +  +A     + L   S  FLA D+ +  +F++     +P+ R T+ITC++T+K+
Sbjct:   63 LKVYRGTGLVSESTLLDLPSAIVTFLMDQNEPRT-----PAVAVTSGPFVYVYKNLRPYFKFTLPPLDANPLELDVWEQAKEDMIDPLTLKEMLEGIRDKAE----IPLSVRSLRFLAQDVPEMENFVNLH-KGQPIKRQTVITCMSTLKK 203          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Y7_ECTSI1.120e-8389.40Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus silicul... [more]
A0A8C4X2I9_ERPCA9.610e-2640.40Bardet-Biedl syndrome 1 n=3 Tax=Polypteridae TaxID... [more]
A0A4W5K5E2_9TELE1.140e-2540.40Bardet-Biedl syndrome 1 n=1 Tax=Hucho hucho TaxID=... [more]
A0A2I4CFM7_9TELE2.450e-2540.40Bardet-Biedl syndrome 1 protein n=2 Tax=Rivulidae ... [more]
A0A6P8VJV3_GYMAC8.640e-2541.06Bardet-Biedl syndrome 1 protein n=2 Tax=Notothenio... [more]
A0A484C9H6_PERFV9.810e-2540.40BBS1 domain-containing protein n=5 Tax=Percidae Ta... [more]
A0A0S7GIJ0_9TELE9.850e-2538.41BBS1 n=3 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7... [more]
A0A8C4AMS6_9TELE1.100e-2439.07Bardet-Biedl syndrome 1 n=5 Tax=Denticeps clupeoid... [more]
UPI0015AAB6911.200e-2438.41Bardet-Biedl syndrome 1 protein n=2 Tax=Elopomorph... [more]
UPI00155315531.420e-2437.75Bardet-Biedl syndrome 1 protein isoform X1 n=2 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6664contigEcto-sp13_S_contig6664:5776..7202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score268.9
Seed ortholog evalue1.5e-69
Seed eggNOG ortholog2880.D7G3Y7
Preferred nameBBS1
Model size453
KEGG koko:K16746
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001085,GO:0001103,GO:0001501,GO:0001664,GO:0001764,GO:0001894,GO:0001895,GO:0003008,GO:0003352,GO:0003356,GO:0003674,GO:0005102,GO:0005113,GO:0005119,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0005930,GO:0006629,GO:0006810,GO:0006892,GO:0006893,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007606,GO:0007608,GO:0007610,GO:0007635,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008594,GO:0009566,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010817,GO:0010970,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016358,GO:0016477,GO:0019953,GO:0021537,GO:0021543,GO:0021544,GO:0021591,GO:0021756,GO:0021761,GO:0021766,GO:0021987,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030534,GO:0030705,GO:0030900,GO:0031090,GO:0031175,GO:0031253,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034464,GO:0034613,GO:0035721,GO:0036064,GO:0040011,GO:0040012,GO:0042048,GO:0042073,GO:0042221,GO:0042445,GO:0042461,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045444,GO:0045494,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0051179,GO:0051216,GO:0051219,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060170,GO:0060249,GO:0060271,GO:0060295,GO:0060296,GO:0060322,GO:0060632,GO:0061351,GO:0061448,GO:0061512,GO:0061951,GO:0065007,GO:0065008,GO:0070491,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097014,GO:0097458,GO:0098588,GO:0098590,GO:0098876,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902019,GO:1905515,GO:1990778,GO:2000145
Exons3
EggNOG free text desc.Bardet-biedl syndrome 1
EggNOG OGs2CMUT@1,2QS2X@2759
Cds size453
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.243417-CDS-Ecto-sp13_S_contig6664:5775..59361681463917.243417-CDS-Ecto-sp13_S_contig6664:5775..5936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6664 5776..5936 +
1681463917.2543528-CDS-Ecto-sp13_S_contig6664:6210..63571681463917.2543528-CDS-Ecto-sp13_S_contig6664:6210..6357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6664 6211..6357 +
1681463917.2701874-CDS-Ecto-sp13_S_contig6664:7057..72021681463917.2701874-CDS-Ecto-sp13_S_contig6664:7057..7202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6664 7058..7202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6664.17536.1prot_Ecto-sp13_S_contig6664.17536.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6664 5776..7202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6664.17536.1

>prot_Ecto-sp13_S_contig6664.17536.1 ID=prot_Ecto-sp13_S_contig6664.17536.1|Name=mRNA_Ecto-sp13_S_contig6664.17536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYI
FIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQ
ATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMK
R
back to top

mRNA from alignment at Ecto-sp13_S_contig6664:5776..7202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6664.17536.1 ID=mRNA_Ecto-sp13_S_contig6664.17536.1|Name=mRNA_Ecto-sp13_S_contig6664.17536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1427bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6664:5776..7202+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAAAGGTGTATCAAGGCACGAGCATCTTCGCCGAGCACCACCTGTTGGA CGAACCGTCGGGCCTCTGCGCGTTCTACGGGGTGCAGGACAACACCAACA CGGCAGGAGGCGAAAGGCCCGCCGTGGCAGTAGCGGCCGGACCTTACATC TTCATTTACAAGTGAGTGACGGAGAAACTAACGTGGGAGTACAACGACGT ACCAGTTTTTGTCCCATTTCTCTACGACGTCCTGGTACAGCCCCACTCAC CGCTCTGGGAAGGCAGCATTGCAACACACCACCGACCGGAACATGATTCG AGACTCTTTTGGATTAGTGGCTGGTAGCGTGCCTGGGGTGTTACGGTCTT GAGCATTTAGTTCCTTTCTCGTCACTCACCGCGTACATATGAAAGATTGA AACCTACGGCCGTCCTCTCTTCTTGTTCGAGGAAGGAATCTACGACCGTA TTTCAAGTTTACGGCCCCACTGGTGCAGCCGTCTGACGAGGAGTTGGGGA TTTGGACAAGATACCGGAAGGGTGACGTAGATGCGGACAAGCTCAAGGCT CTTCTCACTAAGGTACACCCGCAAGCCACACCGTGTGCTTCGAGGACAAT ACGCAAAACATTTTGTCTACGTATTGATTTTGTTTGCCAGCTCAGCAGCC ATCCAACAGACTCTCCACGAAGGGTACGTTACTTCAGGCGTTCTACCTTC AAAATGCCTTCCCCAACATAGGGCGTGTGCGCATAAGTAGATGTCCTAGT CCCGTCAAAGATGATCTGCTATTCTGCCGCTTTCTCTTCCCATGGATGGC CTGTCGCTTGTCCTCTGTGCTGAGAGCAGGGGCACATGAGCGGATGCATC GTATCGCCGTAGTGAACCGAGAGTTAAACCTAGCGATCGTAGCATTGCGT GTTTGTCTTCTATCGTTTCTCAGCGCGTCAGAGGACGTGCACGGCCAGGT ACTGGCACACGCTAAGAACCAACACAAGGGAGCACCTTGGCGGTGCTAGG GTTTGAGCAACATAGGACAACCACCATCACTTGCAGCAGCAGCCATCACA CACCAAGCTTGTAGCTCCAACTCCAGTCCCACAGCGACCGACCTCGCGAG AGCGTGGGGGGTTGGAACGTGAATTCCCTGTGTGTGTTCATTTTGTCTAC ATAATTCTGGGTAAGAAGCATCAAAGCCAGGGGGATCGGAGCACACTACG GCGCAGCACTTGTCCCAGCCCCCCCCTTGAAGTTACGACATTTATTGCGC CTCAAATCGATCTGATGTCGAACCAAGGCGAGAGAGGATGGGGTGCGACT TGGCTCGTTGTCGACGGATTTCTTGGCGCCCGACCTCGAAGACCGTGGGA GTTTTCTGTCTGCGAGGGGGGCAAGCGAGCCCCTGTCACGCACGACGATC ATCACATGCCTTGCGACAATGAAAAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6664:5776..7202+

>mRNA_Ecto-sp13_S_contig6664.17536.1 ID=mRNA_Ecto-sp13_S_contig6664.17536.1|Name=mRNA_Ecto-sp13_S_contig6664.17536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6664:5776..7202+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAAAGGTGTATCAAGGCACGAGCATCTTCGCCGAGCACCACCTGTTGGA
CGAACCGTCGGGCCTCTGCGCGTTCTACGGGGTGCAGGACAACACCAACA
CGGCAGGAGGCGAAAGGCCCGCCGTGGCAGTAGCGGCCGGACCTTACATC
TTCATTTACAAGAATCTACGACCGTATTTCAAGTTTACGGCCCCACTGGT
GCAGCCGTCTGACGAGGAGTTGGGGATTTGGACAAGATACCGGAAGGGTG
ACGTAGATGCGGACAAGCTCAAGGCTCTTCTCACTAAGGTACACCCGCAA
GCCACACCAGAGGATGGGGTGCGACTTGGCTCGTTGTCGACGGATTTCTT
GGCGCCCGACCTCGAAGACCGTGGGAGTTTTCTGTCTGCGAGGGGGGCAA
GCGAGCCCCTGTCACGCACGACGATCATCACATGCCTTGCGACAATGAAA
AGG
back to top