mRNA_Ecto-sp13_S_contig6664.17536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: D7G3Y7_ECTSI (Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y7_ECTSI) HSP 1 Score: 266 bits (679), Expect = 1.120e-83 Identity = 135/151 (89.40%), Postives = 138/151 (91.39%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVYQGTSIFAEH LLDEPSGLCAFYGV+DNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLV+PSDEEL IWTRYRKG+VDAD LKALL K EDGVRLG LSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATM R
Sbjct: 64 LKVYQGTSIFAEHPLLDEPSGLCAFYGVEDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSDEELEIWTRYRKGEVDADTLKALLAKA-----TEDGVRLGPLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMNR 209
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A8C4X2I9_ERPCA (Bardet-Biedl syndrome 1 n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4X2I9_ERPCA) HSP 1 Score: 111 bits (278), Expect = 9.610e-26 Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKV++GTS+ E+ LLD P+GL AF+ Q+ T PA+AVA+GP+I++YKNLRPYFKFT P ++ ++ E +W++ R+ +D LK +L + +A V L S FL + +D SF++ +P+ R T+ITC+ T+K+
Sbjct: 61 LKVFKGTSLMTENTLLDLPTGLVAFHMDQNEPRT-----PAIAVASGPFIYVYKNLRPYFKFTLPPLEVNELEQEVWSQAREDKIDPMSLKEMLEGIRNKAQ----VPLSVRSLKFLMLEHQDMESFVNMH-KQQPIRRQTVITCIGTLKK 201
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A4W5K5E2_9TELE (Bardet-Biedl syndrome 1 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5K5E2_9TELE) HSP 1 Score: 107 bits (268), Expect = 1.140e-25 Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVY+GT + +E+ LLD P+GL +F Q T PA+AVA+GP+I++YKNLRPYFKFT P ++ + E +W + R+ +D LK +L + +A V L S FL D +D +F++ A +P+ R T+ITC+ T+K+
Sbjct: 69 LKVYRGTGLMSENTLLDLPTGLVSFLMDQHEPRT-----PAIAVASGPFIYVYKNLRPYFKFTLPPLEVNALEQDVWNQAREDMIDPLSLKEMLEGIRDKAD----VPLSVRSLRFLMLDPQDTEAFVNLHKA-QPIRRQTVITCIGTLKK 209
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A2I4CFM7_9TELE (Bardet-Biedl syndrome 1 protein n=2 Tax=Rivulidae TaxID=28771 RepID=A0A2I4CFM7_9TELE) HSP 1 Score: 110 bits (275), Expect = 2.450e-25 Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVY+GT++ +E LLD PSGL AF+ + PAVAVA+GP I++YKNLRPYFKFT P ++ + E +W + R+G +D LK +L + + D + L S FL+ D+ D F+ +P+ R T+ITC+ T+K+
Sbjct: 58 LKVYRGTALMSESVLLDLPSGLVAFF-----MDLHEPRIPAVAVASGPCIYVYKNLRPYFKFTLPSLEINPLEQDVWQQVREGQIDPMTLKEMLESIRKK----DDIPLSIRSLRFLSLDVNDMDEFVQLH-RQQPIKRQTVITCIGTLKK 198
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A6P8VJV3_GYMAC (Bardet-Biedl syndrome 1 protein n=2 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8VJV3_GYMAC) HSP 1 Score: 108 bits (271), Expect = 8.640e-25 Identity = 62/151 (41.06%), Postives = 89/151 (58.94%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVY+GT++ +E LLD PSGL AF+ + PAVAVA+GP +++YKNLRPYFKFT P ++ + E +W + R+G +D LK +L V A V L S FL+ D +D F+ +P+ R T+ITC+ T+K+
Sbjct: 58 LKVYRGTALMSESSLLDLPSGLVAFF-----MDLHEPRIPAVAVASGPCVYVYKNLRPYFKFTLPGLRVNTLEQDVWRQVREGQIDPLTLKEMLESVRKTAD----VPLSVRSLRFLSLDTDDMDDFVQLH-KQQPIRRQTVITCIGTLKK 198
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A484C9H6_PERFV (BBS1 domain-containing protein n=5 Tax=Percidae TaxID=8165 RepID=A0A484C9H6_PERFV) HSP 1 Score: 108 bits (270), Expect = 9.810e-25 Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVY+GT++ +E LLD PSGL AF+ + PAVAVA+GP +++YKNLRPYFKFT P ++ + E +W + R+G +D LK +L + + V L S FL+ + ED FL +P+ R T+ITC+ T+K+
Sbjct: 3 LKVYRGTALMSESALLDLPSGLAAFF-----MDLHEPRVPAVAVASGPCVYVYKNLRPYFKFTLPGLEVNALEQDLWQQAREGQIDPVTLKEMLESIRKKVD----VPLSVRSLHFLSLETEDMDDFLQLH-KQQPIRRQTVITCIGTLKK 143
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A0S7GIJ0_9TELE (BBS1 n=3 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7GIJ0_9TELE) HSP 1 Score: 104 bits (259), Expect = 9.850e-25 Identity = 58/151 (38.41%), Postives = 90/151 (59.60%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVY+GT++ +E+ LLD P+GL AF+ + PAVAVA+GP I++YKNLRPYFKFT P + + E +W + R+G +D LK +L + +A + L S FL+ + ++ F+ +P+ R T+ITC+ T+K+
Sbjct: 58 LKVYRGTALISENSLLDLPAGLVAFF-----MDLHEPRIPAVAVASGPCIYVYKNLRPYFKFTLPSLDINPLEQDVWQQVREGQIDPVMLKEMLESIRKKAD----IPLSVRSIRFLSLESDEVDEFVQLY-KQQPIRRQTVITCIGTLKK 198
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: A0A8C4AMS6_9TELE (Bardet-Biedl syndrome 1 n=5 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4AMS6_9TELE) HSP 1 Score: 108 bits (270), Expect = 1.100e-24 Identity = 59/151 (39.07%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVY+GT + +E+ LLD P+GL +F Q T PAVAVA+GP+I++YKNLRPYFKFT P ++ + E +W++ ++ +D LK +L + +A + L + S FL DL++ +F++ +P+ R T+ITC+ T+K+
Sbjct: 68 LKVYRGTGLLSENTLLDLPTGLVSFLMEQHEPRT-----PAVAVASGPFIYVYKNLRPYFKFTLPPLEVNPLEQDLWSQAKEDMIDPMSLKEMLESIRDKAD----IPLSARSLRFLMLDLQEMVTFVNLH-KEQPIRRQTVITCINTLKK 208
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: UPI0015AAB691 (Bardet-Biedl syndrome 1 protein n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI0015AAB691) HSP 1 Score: 108 bits (270), Expect = 1.200e-24 Identity = 58/151 (38.41%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVY+GTS+ +E+ LLD P+GL +F+ Q T PA+AVA+GP+I++YKNLRPYFKFT P ++ + E +W++ ++ +D LK +L + +A + L S FL D ++ +F++ +P+ R T+ITC++T+K+
Sbjct: 63 LKVYRGTSMMSENTLLDLPTGLVSFFMDQHEPRT-----PAIAVASGPFIYVYKNLRPYFKFTLPTLEVNPLEQEVWSQAKEDMIDPLSLKEMLEGIRDKAD----IPLSVRSLKFLMLDPQEMEAFVNVH-KQQPIRRQTVITCISTLKK 203
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Match: UPI0015531553 (Bardet-Biedl syndrome 1 protein isoform X1 n=2 Tax=Trachemys scripta elegans TaxID=31138 RepID=UPI0015531553) HSP 1 Score: 104 bits (260), Expect = 1.420e-24 Identity = 57/151 (37.75%), Postives = 90/151 (59.60%), Query Frame = 1
Query: 1 LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVQPSDEELGIWTRYRKGDVDADKLKALLTKVHPQATPEDGVRLGSLSTDFLAPDLEDRGSFLSARGASEPLSRTTIITCLATMKR 453
LKVY+GT + +E LLD PS + F Q+ T PAVAV +GP++++YKNLRPYFKFT P + + EL +W + ++ +D LK +L + +A + L S FLA D+ + +F++ +P+ R T+ITC++T+K+
Sbjct: 63 LKVYRGTGLVSESTLLDLPSAIVTFLMDQNEPRT-----PAVAVTSGPFVYVYKNLRPYFKFTLPPLDANPLELDVWEQAKEDMIDPLTLKEMLEGIRDKAE----IPLSVRSLRFLAQDVPEMENFVNLH-KGQPIKRQTVITCMSTLKK 203 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6664.17536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6664.17536.1 >prot_Ecto-sp13_S_contig6664.17536.1 ID=prot_Ecto-sp13_S_contig6664.17536.1|Name=mRNA_Ecto-sp13_S_contig6664.17536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp LKVYQGTSIFAEHHLLDEPSGLCAFYGVQDNTNTAGGERPAVAVAAGPYIback to top mRNA from alignment at Ecto-sp13_S_contig6664:5776..7202+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6664.17536.1 ID=mRNA_Ecto-sp13_S_contig6664.17536.1|Name=mRNA_Ecto-sp13_S_contig6664.17536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1427bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6664:5776..7202+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6664:5776..7202+ >mRNA_Ecto-sp13_S_contig6664.17536.1 ID=mRNA_Ecto-sp13_S_contig6664.17536.1|Name=mRNA_Ecto-sp13_S_contig6664.17536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6664:5776..7202+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |