prot_Ecto-sp13_S_contig6664.17535.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6664.17535.1
Unique Nameprot_Ecto-sp13_S_contig6664.17535.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length147
Homology
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 3.520e-52
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
Query:   65 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR
Sbjct:   64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 145          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A7S2UQ42_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ42_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.710e-41
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 0
Query:   72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            KRSPSDFLK+VLGRPV V+LNSG DYRGVL CLDGYMNIAMEQTEEYV+GQLKA +GDCFIRGNNVLYISTQ+RR
Sbjct:   28 KRSPSDFLKSVLGRPVSVRLNSGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNNVLYISTQKRR 102          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A7S2ATC3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATC3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.140e-40
Identity = 67/75 (89.33%), Postives = 68/75 (90.67%), Query Frame = 0
Query:   72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            K  PSDFLKTVLGRPVVVKLNSG DYRGVL CLDGYMNIAMEQTEEYVNGQLKA +GDCFIRGNNVLYIS  RRR
Sbjct:   33 KCQPSDFLKTVLGRPVVVKLNSGTDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISASRRR 107          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 140 bits (353), Expect = 1.480e-40
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 0
Query:   72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            K +PSDFLKTVLGRPVVVKLNSG+DYRGVL CLDGYMNIAMEQTEEYV+GQLKA +GD FIRGNNVLYISTQ+RR
Sbjct:   30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDTFIRGNNVLYISTQKRR 104          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A448Z717_9STRA (Sm domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z717_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.110e-40
Identity = 65/81 (80.25%), Postives = 76/81 (93.83%), Query Frame = 0
Query:   67 QTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEY-VNGQLKATFGDCFIRGNNVLYISTQRRR 146
            QTGG KRSPSDFLK+VLGRP +VKLNSGI+YRGVL CLDGY+NIAMEQT+EY ++GQLKAT+GDCFIRGNNVL+IS+Q +R
Sbjct:   20 QTGGKKRSPSDFLKSVLGRPAIVKLNSGIEYRGVLACLDGYLNIAMEQTQEYGLDGQLKATYGDCFIRGNNVLHISSQAKR 100          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A0L8G189_OCTBM (Sm domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8G189_OCTBM)

HSP 1 Score: 138 bits (347), Expect = 5.740e-40
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0
Query:   70 GGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            G K++PSDFLK ++GRPVVVKLNSG+DYRGVL CLDGYMNIA+EQTEEYVNGQLK  +GD FIRGNNVLYISTQ+RR
Sbjct:    3 GRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNRYGDAFIRGNNVLYISTQKRR 79          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A836CMP0_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP0_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.230e-39
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 0
Query:   66 AQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            A+     +SPSDFLK VLGR V+VKLNSG+DYRGVL CLDGYMNIAMEQTEEYVNGQLKA +GDCFIRGNNVLYIST +RR
Sbjct:   37 AKAASKVKSPSDFLKGVLGRSVIVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTTKRR 117          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: V4A3S6_LOTGI (Sm domain-containing protein n=19 Tax=Protostomia TaxID=33317 RepID=V4A3S6_LOTGI)

HSP 1 Score: 136 bits (343), Expect = 2.260e-39
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0
Query:   72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            K++PSDFLK ++GRPVVVKLNSG+DYRGVL CLDGYMNIA+EQTEEYVNGQLK  +GD FIRGNNVLYISTQ+RR
Sbjct:    4 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 78          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 n=406 Tax=Sarcopterygii TaxID=8287 RepID=LSM6_HUMAN)

HSP 1 Score: 136 bits (343), Expect = 2.330e-39
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0
Query:   72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            K++PSDFLK ++GRPVVVKLNSG+DYRGVL CLDGYMNIA+EQTEEYVNGQLK  +GD FIRGNNVLYISTQ+RR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79          
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: K4FT18_CALMI (U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=Vertebrata TaxID=7742 RepID=K4FT18_CALMI)

HSP 1 Score: 136 bits (343), Expect = 2.330e-39
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0
Query:   72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 146
            K++PSDFLK ++GRPVVVKLNSG+DYRGVL CLDGYMNIA+EQTEEYVNGQLK  +GD FIRGNNVLYISTQ+RR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA8_9PHAE3.520e-52100.00Sm domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2UQ42_9STRA6.710e-4188.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2ATC3_9STRA1.140e-4089.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2IZG2_9EUKA1.480e-4088.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A448Z717_9STRA4.110e-4080.25Sm domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]
A0A0L8G189_OCTBM5.740e-4081.82Sm domain-containing protein n=2 Tax=Octopus TaxID... [more]
A0A836CMP0_9STRA1.230e-3980.25Sm domain-containing protein n=1 Tax=Tribonema min... [more]
V4A3S6_LOTGI2.260e-3982.67Sm domain-containing protein n=19 Tax=Protostomia ... [more]
LSM6_HUMAN2.330e-3982.67U6 snRNA-associated Sm-like protein LSm6 n=406 Tax... [more]
K4FT18_CALMI2.330e-3982.67U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 77..142
e-value: 7.5E-21
score: 85.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 77..141
e-value: 4.4E-18
score: 64.7
NoneNo IPR availableGENE3D2.30.30.100coord: 72..143
e-value: 1.1E-30
score: 107.1
NoneNo IPR availablePANTHERPTHR11021:SF7coord: 64..145
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 64..145
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 75..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6664contigEcto-sp13_S_contig6664:2064..4200 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6664.17535.1mRNA_Ecto-sp13_S_contig6664.17535.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6664 1009..4233 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6664.17535.1 ID=prot_Ecto-sp13_S_contig6664.17535.1|Name=mRNA_Ecto-sp13_S_contig6664.17535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MTDTTTPPPPPPPKEAEDASKRQENGGEEEKEEDVAMPPAPAPPAASAAA
APAAATVAAVAVAAPAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGV
LVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf