mRNA_Ecto-sp13_S_contig6664.17535.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE) HSP 1 Score: 171 bits (434), Expect = 8.180e-48 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1
Query: 226 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR
Sbjct: 64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 145
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A7S2UQ42_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ42_9STRA) HSP 1 Score: 141 bits (356), Expect = 4.640e-37 Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query: 247 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
KRSPSDFLK+VLGRPV V+LNSG DYRGVL CLDGYMNIAMEQTEEYV+GQLKA +GDCFIRGNNVLYISTQ+RR
Sbjct: 28 KRSPSDFLKSVLGRPVSVRLNSGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNNVLYISTQKRR 102
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A7S2ATC3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATC3_9STRA) HSP 1 Score: 141 bits (355), Expect = 7.770e-37 Identity = 67/75 (89.33%), Postives = 68/75 (90.67%), Query Frame = 1
Query: 247 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
K PSDFLKTVLGRPVVVKLNSG DYRGVL CLDGYMNIAMEQTEEYVNGQLKA +GDCFIRGNNVLYIS RRR
Sbjct: 33 KCQPSDFLKTVLGRPVVVKLNSGTDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISASRRR 107
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA) HSP 1 Score: 140 bits (354), Expect = 9.880e-37 Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query: 247 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
K +PSDFLKTVLGRPVVVKLNSG+DYRGVL CLDGYMNIAMEQTEEYV+GQLKA +GD FIRGNNVLYISTQ+RR
Sbjct: 30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDTFIRGNNVLYISTQKRR 104
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A448Z717_9STRA (Sm domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z717_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.860e-36 Identity = 66/84 (78.57%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 232 QTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEY-VNGQLKATFGDCFIRGNNVLYISTQRRR*YG 480
QTGG KRSPSDFLK+VLGRP +VKLNSGI+YRGVL CLDGY+NIAMEQT+EY ++GQLKAT+GDCFIRGNNVL+IS+Q +R G
Sbjct: 20 QTGGKKRSPSDFLKSVLGRPAIVKLNSGIEYRGVLACLDGYLNIAMEQTQEYGLDGQLKATYGDCFIRGNNVLHISSQAKRKQG 103
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A0L8G189_OCTBM (Sm domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8G189_OCTBM) HSP 1 Score: 138 bits (348), Expect = 3.410e-36 Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1
Query: 241 GGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
G K++PSDFLK ++GRPVVVKLNSG+DYRGVL CLDGYMNIA+EQTEEYVNGQLK +GD FIRGNNVLYISTQ+RR
Sbjct: 3 GRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNRYGDAFIRGNNVLYISTQKRR 79
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: A0A836CMP0_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP0_9STRA) HSP 1 Score: 139 bits (349), Expect = 7.460e-36 Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1
Query: 229 AQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
A+ +SPSDFLK VLGR V+VKLNSG+DYRGVL CLDGYMNIAMEQTEEYVNGQLKA +GDCFIRGNNVLYIST +RR
Sbjct: 37 AKAASKVKSPSDFLKGVLGRSVIVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTTKRR 117
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: V4A3S6_LOTGI (Sm domain-containing protein n=19 Tax=Protostomia TaxID=33317 RepID=V4A3S6_LOTGI) HSP 1 Score: 137 bits (344), Expect = 1.240e-35 Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1
Query: 247 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
K++PSDFLK ++GRPVVVKLNSG+DYRGVL CLDGYMNIA+EQTEEYVNGQLK +GD FIRGNNVLYISTQ+RR
Sbjct: 4 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 78
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 n=406 Tax=Sarcopterygii TaxID=8287 RepID=LSM6_HUMAN) HSP 1 Score: 137 bits (344), Expect = 1.280e-35 Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1
Query: 247 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
K++PSDFLK ++GRPVVVKLNSG+DYRGVL CLDGYMNIA+EQTEEYVNGQLK +GD FIRGNNVLYISTQ+RR
Sbjct: 5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Match: K4FT18_CALMI (U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=Vertebrata TaxID=7742 RepID=K4FT18_CALMI) HSP 1 Score: 137 bits (344), Expect = 1.280e-35 Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1
Query: 247 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 471
K++PSDFLK ++GRPVVVKLNSG+DYRGVL CLDGYMNIA+EQTEEYVNGQLK +GD FIRGNNVLYISTQ+RR
Sbjct: 5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6664.17535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6664.17535.1 >prot_Ecto-sp13_S_contig6664.17535.1 ID=prot_Ecto-sp13_S_contig6664.17535.1|Name=mRNA_Ecto-sp13_S_contig6664.17535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp MTDTTTPPPPPPPKEAEDASKRQENGGEEEKEEDVAMPPAPAPPAASAAAback to top mRNA from alignment at Ecto-sp13_S_contig6664:1009..4233- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6664.17535.1 ID=mRNA_Ecto-sp13_S_contig6664.17535.1|Name=mRNA_Ecto-sp13_S_contig6664.17535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6664:1009..4233- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6664:1009..4233- >mRNA_Ecto-sp13_S_contig6664.17535.1 ID=mRNA_Ecto-sp13_S_contig6664.17535.1|Name=mRNA_Ecto-sp13_S_contig6664.17535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6664:1009..4233- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |