mRNA_Ecto-sp13_S_contig66429.17502.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66429.17502.1
Unique NamemRNA_Ecto-sp13_S_contig66429.17502.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66429.17502.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 1.240e-86
Identity = 191/251 (76.10%), Postives = 200/251 (79.68%), Query Frame = 1 
Query:    1 PEGGRECYRCSPLQGDAAVAADDGGGERLIRGHDLPAGEEGKDKKNKLRADEERGRWRREGGSSDRGTATAVALPEGGAVERTAGEAGPVKRGERGAAGVGAALLGAVLSGLAVLAAGGAGDDDALSESGFLGVG-TGSGDGGDFEAAAHGXXXXXXXXXXXXXXXXXXXXSGLSA--AARRREMDPTNRRETRGGLRSAVTGRKGLAFGRAGDADGPGAQSPSTEPPGGAANGIADSVLGAGDGWGASAT 744
            PEGGRECYRCSPLQGDAAVAA+D GGERL+R HDLP GE+ K+KKNKLRAD ERG  RREGGSS RGTATAVA PEGGAVE TAGEAGPVKRG  GAAG+GAALLGAVLSGLA LAAGGAGDDDALSES FLGVG  GSGDGGDFEAA HG          XXXXXXXXXX       A +RREMDP NRRET    RSAVTGRKGLAFG AGDADGPGA+ PSTEPPGG A+G A SV  AG+ W A  T
Sbjct:   32 PEGGRECYRCSPLQGDAAVAAEDDGGERLVRVHDLPPGEKRKEKKNKLRADGERGGRRREGGSSVRGTATAVAPPEGGAVELTAGEAGPVKRGGGGAAGIGAALLGAVLSGLAALAAGGAGDDDALSESVFLGVGGAGSGDGGDFEAAVHGDAAGGGLIRGXXXXXXXXXXXXXXXXXARKRREMDPANRRETGDEPRSAVTGRKGLAFGGAGDADGPGARPPSTEPPGGGASGTAGSVPDAGNEWDAHTT 282
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BLAST of mRNA_Ecto-sp13_S_contig66429.17502.1 vs. uniprot
Match: A0A6H5JU12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU12_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 7.270e-86
Identity = 186/251 (74.10%), Postives = 192/251 (76.49%), Query Frame = 1 
Query:    1 PEGGRECYRCSPLQGDAAVAADDGGGERLIRGHDLPAGEEGKDKKNKLRADEERGRWRREGGSSDRGTATAVALPEGGAVERTAGEAGPVKRGERGAAGVGAALLGAVLSGLAVLAAGGAGDDDALSESGFLGVG-TGSGDGGDFEAAAH-GXXXXXXXXXXXXXXXXXXXXSGLSAAARRR-EMDPTNRRETRGGLRSAVTGRKGLAFGRAGDADGPGAQSPSTEPPGGAANGIADSVLGAGDGWGASAT 744
            PEGGRECYRCS L G A VAAD GGGERL+RGHDLPA EE K+K+ KLRAD ERGR RREGGSSDRGTATAVA PE G VE TAGEAGPV+RG  GAAGV        LSGL  LAAGGAGDDDALSESGFLGVG  GSGDGGD+EAAAH               XXXX   SG S AARRR EMDP NRRET  G RSAVTGRKGLAFG AGD DGPGAQSPSTEPPGGAANGIA  V GAG+GWGA AT
Sbjct:  113 PEGGRECYRCSLLHGGAGVAADGGGGERLVRGHDLPAREERKEKETKLRADGERGRRRREGGSSDRGTATAVASPERGVVELTAGEAGPVERGGGGAAGVXXXXXXXXLSGLVALAAGGAGDDDALSESGFLGVGGAGSGDGGDYEAAAHEDAAGGGLIRGSGGVXXXXVDGSGRSEAARRRREMDPANRRETGDGPRSAVTGRKGLAFGGAGDTDGPGAQSPSTEPPGGAANGIAGIVPGAGNGWGAHAT 363
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66429.17502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIK9_ECTSI1.240e-8676.10Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
A0A6H5JU12_9PHAE7.270e-8674.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66429contigEcto-sp13_S_contig66429:1..744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score297.4
Seed ortholog evalue6.4e-78
Seed eggNOG ortholog2880.D8LIK9
Model size744
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
Ec32 ortholog descriptionTRP-like family
Ec32 orthologEc-18_003210.2
Cds size744
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463914.1792624-CDS-Ecto-sp13_S_contig66429:0..7441681463914.1792624-CDS-Ecto-sp13_S_contig66429:0..744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66429 1..744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66429.17502.1prot_Ecto-sp13_S_contig66429.17502.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66429 1..744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66429.17502.1

>prot_Ecto-sp13_S_contig66429.17502.1 ID=prot_Ecto-sp13_S_contig66429.17502.1|Name=mRNA_Ecto-sp13_S_contig66429.17502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
PEGGRECYRCSPLQGDAAVAADDGGGERLIRGHDLPAGEEGKDKKNKLRA
DEERGRWRREGGSSDRGTATAVALPEGGAVERTAGEAGPVKRGERGAAGV
GAALLGAVLSGLAVLAAGGAGDDDALSESGFLGVGTGSGDGGDFEAAAHG
GAAGGGLIRGSGGGGGAVDGSGLSAAARRREMDPTNRRETRGGLRSAVTG
RKGLAFGRAGDADGPGAQSPSTEPPGGAANGIADSVLGAGDGWGASAT
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mRNA from alignment at Ecto-sp13_S_contig66429:1..744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66429.17502.1 ID=mRNA_Ecto-sp13_S_contig66429.17502.1|Name=mRNA_Ecto-sp13_S_contig66429.17502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66429:1..744+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAAGGAGGCCGCGAGTGCTACCGTTGCTCCCCGCTTCAGGGCGATGC
GGCAGTGGCAGCAGACGACGGCGGCGGCGAACGATTGATCCGTGGGCACG
ATCTTCCCGCCGGAGAAGAAGGGAAAGACAAAAAGAACAAGCTTCGTGCC
GACGAGGAACGCGGACGGTGGCGTAGAGAAGGTGGTTCGTCGGATAGGGG
CACCGCCACCGCCGTCGCCCTCCCGGAGGGCGGGGCCGTGGAGCGAACCG
CAGGCGAAGCGGGGCCAGTTAAACGGGGTGAGAGAGGAGCGGCCGGCGTT
GGGGCTGCGCTGCTGGGCGCGGTGCTGTCCGGTCTTGCTGTGTTGGCCGC
GGGCGGCGCAGGGGACGACGACGCGCTGTCGGAGAGCGGGTTTTTGGGTG
TTGGTACAGGCTCCGGCGACGGGGGCGATTTTGAAGCTGCTGCTCATGGG
GGTGCTGCCGGTGGCGGGCTCATTCGAGGTAGCGGCGGCGGTGGTGGTGC
TGTTGACGGGAGCGGACTGTCGGCGGCGGCCAGGAGAAGGGAGATGGACC
CTACGAACAGAAGAGAGACAAGAGGCGGGCTCCGTTCGGCAGTCACCGGG
CGTAAAGGCCTGGCATTCGGAAGAGCGGGCGACGCTGATGGTCCGGGGGC
ACAGTCTCCGTCCACCGAGCCCCCTGGTGGTGCTGCTAATGGGATCGCTG
ATAGCGTCCTGGGCGCTGGTGACGGATGGGGCGCCTCCGCGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66429:1..744+

>mRNA_Ecto-sp13_S_contig66429.17502.1 ID=mRNA_Ecto-sp13_S_contig66429.17502.1|Name=mRNA_Ecto-sp13_S_contig66429.17502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66429:1..744+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAAGGAGGCCGCGAGTGCTACCGTTGCTCCCCGCTTCAGGGCGATGC
GGCAGTGGCAGCAGACGACGGCGGCGGCGAACGATTGATCCGTGGGCACG
ATCTTCCCGCCGGAGAAGAAGGGAAAGACAAAAAGAACAAGCTTCGTGCC
GACGAGGAACGCGGACGGTGGCGTAGAGAAGGTGGTTCGTCGGATAGGGG
CACCGCCACCGCCGTCGCCCTCCCGGAGGGCGGGGCCGTGGAGCGAACCG
CAGGCGAAGCGGGGCCAGTTAAACGGGGTGAGAGAGGAGCGGCCGGCGTT
GGGGCTGCGCTGCTGGGCGCGGTGCTGTCCGGTCTTGCTGTGTTGGCCGC
GGGCGGCGCAGGGGACGACGACGCGCTGTCGGAGAGCGGGTTTTTGGGTG
TTGGTACAGGCTCCGGCGACGGGGGCGATTTTGAAGCTGCTGCTCATGGG
GGTGCTGCCGGTGGCGGGCTCATTCGAGGTAGCGGCGGCGGTGGTGGTGC
TGTTGACGGGAGCGGACTGTCGGCGGCGGCCAGGAGAAGGGAGATGGACC
CTACGAACAGAAGAGAGACAAGAGGCGGGCTCCGTTCGGCAGTCACCGGG
CGTAAAGGCCTGGCATTCGGAAGAGCGGGCGACGCTGATGGTCCGGGGGC
ACAGTCTCCGTCCACCGAGCCCCCTGGTGGTGCTGCTAATGGGATCGCTG
ATAGCGTCCTGGGCGCTGGTGACGGATGGGGCGCCTCCGCGACG
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