mRNA_Ecto-sp13_S_contig6630.17492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6630.17492.1
Unique NamemRNA_Ecto-sp13_S_contig6630.17492.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6630.17492.1 vs. uniprot
Match: A0A6H5KJG2_9PHAE (Tub domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG2_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.190e-74
Identity = 141/154 (91.56%), Postives = 144/154 (93.51%), Query Frame = 1 
Query:    1 RKWEKTGVVPPGMIVLRSKQPKWSAWQGCHTLAFDRGGERVREPSRKNVSMVAADASPXXXXXXXXXXXXXXXXXXL-AGRGSRAGGGNNSEAQQMGGGDKDHADGHRHRPSMTVASKSTLQVGKISEDHFSLDFCWPLSPLQAFVTAMSIFDG 459
            RKWEK GVVPPGMIVLRSKQPKWSAWQGCHTL FDRGGERVREPSRKNVSMVAADASP XXXXXXXXXXXXXXXXX  AGRG+RAGGG NSEAQQ GGGDKDHA+GH HRPS+T ASKSTLQVGKISEDHFSLDFCWPLSPLQAFV AMSIFDG
Sbjct:  586 RKWEKAGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMVAADASPAXXXXXXXXXXXXXXXXXXXAGRGNRAGGGTNSEAQQTGGGDKDHAEGHHHRPSITAASKSTLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 739
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BLAST of mRNA_Ecto-sp13_S_contig6630.17492.1 vs. uniprot
Match: D8LGZ8_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ8_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 8.380e-57
Identity = 120/154 (77.92%), Postives = 123/154 (79.87%), Query Frame = 1 
Query:    1 RKWEKTGVVPPGMIVLRSKQPKWSAWQGCHTLAFDRGGERVREPSRKNVSMVAADASPXXXXXXXXXXXXXXXXXXLAGRGSRAGGGNNSEAQQMGGGD-KDHADGHRHRPSMTVASKSTLQVGKISEDHFSLDFCWPLSPLQAFVTAMSIFDG 459
            RKWEKTGVVPPGMIVLRSKQPKWSAWQGCHTL FDRGGERVREPSRKNVSM+AADASP XXXXXXXXXXXXXXXXX                        KDH DGH HRPS+T AS+ TLQVGKISEDHFSLDFCWPLSPLQAFV AMSIFDG
Sbjct:  494 RKWEKTGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMIAADASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDHTDGHHHRPSITAASRPTLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 647
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BLAST of mRNA_Ecto-sp13_S_contig6630.17492.1 vs. uniprot
Match: A0A835YQA2_9STRA (Tub domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.950e-28
Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = 1 
Query:   19 GVVPPGMIVLRSKQPKWSAWQGCHTLAFDRGGERVREPSRKNVSMVAADASPXXXXXXXXXXXXXXXXXXLAGRGSRAGGGNNSEAQQMGGGDKDHADGHRHRPSMTVASKSTLQVGKISEDHFSLDFCWPLSPLQAFVTAMSIFDG 459
            G  PPG ++L+SK+P+WSAWQGCHTL F+RG +RVREPSRKN+S+V A  +                    A RG  AG G  + A      D D       R +  V     LQ+GK+++D+FSLDF +PLSP QAFV AMS FDG
Sbjct:  406 GAPPPGFLLLQSKKPRWSAWQGCHTLCFERGAQRVREPSRKNISVVLAPGA-------------------SASRGELAGKGAAAVASAW---DMDDQQSEALRSAPVV-----LQMGKLADDYFSLDFNYPLSPFQAFVLAMSAFDG 525
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BLAST of mRNA_Ecto-sp13_S_contig6630.17492.1 vs. uniprot
Match: A0A4D9CTJ8_9STRA (Tub domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTJ8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.850e-8
Identity = 50/155 (32.26%), Postives = 71/155 (45.81%), Query Frame = 1 
Query:   28 PPGMIVLRSKQPKWSAWQGCHTLAFDRGGERVREPSRKNVSMVAADASPXXXXXXXXXXXXXXXXXXLAGRGSRAGGGNNSEAQQMG----GGDKDHADGHRHRPSMTVASK-STL-------QVGKISEDHFSLDFCWPLSPLQAFVTAMSIFD 456
            PP ++ L S+ P W   +G H L F+ G +R+  PSRKN+++V A AS                     G G+R  G   +   ++G    GG      G R       AS+  TL       Q+GK+SED +SLDF  P SP QA   A++  +
Sbjct:  452 PPRVLTLHSQPPAWDPDRGLHALDFEMGEQRMPLPSRKNLAVVEATASSLQDYAAGLTEVRASGHRAEGGSGARRRG-RTAVRSRIGLSHLGGGIGLRRGERSGVDDAAASEWGTLERPRFACQLGKLSEDAYSLDFREPFSPFQALAVAVAALE 605
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BLAST of mRNA_Ecto-sp13_S_contig6630.17492.1 vs. uniprot
Match: A0A7S2V1J1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1J1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 9.090e-5
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  358 LQVGKISEDHFSLDFCWPLSPLQAFVTAMSIFD 456
            +Q G+I+ + FS+DFCWPLSPLQAF  ++S  D
Sbjct:   88 MQFGRIAHNQFSMDFCWPLSPLQAFAISLSSLD 120
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BLAST of mRNA_Ecto-sp13_S_contig6630.17492.1 vs. uniprot
Match: A0A482R6S1_9EURY (Tub domain-containing protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R6S1_9EURY)

HSP 1 Score: 48.9 bits (115), Expect = 9.390e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:  358 LQVGKISEDHFSLDFCWPLSPLQAFVTAMSIFD 456
            LQ G++S D F++DF WPLSPLQAF   +S FD
Sbjct:   29 LQFGRVSTDEFTMDFQWPLSPLQAFQICLSSFD 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6630.17492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KJG2_9PHAE1.190e-7491.56Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGZ8_ECTSI8.380e-5777.92Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQA2_9STRA1.950e-2846.26Tub domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CTJ8_9STRA2.850e-832.26Tub domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2V1J1_9STRA9.090e-557.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482R6S1_9EURY9.390e-560.61Tub domain-containing protein n=1 Tax=Methanosarci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6630contigEcto-sp13_S_contig6630:4189..6497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons3
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463913.3827868-UTR-Ecto-sp13_S_contig6630:4188..43051681463913.3827868-UTR-Ecto-sp13_S_contig6630:4188..4305Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6630 4189..4305 -
1681463913.4380305-UTR-Ecto-sp13_S_contig6630:6461..64971681463913.4380305-UTR-Ecto-sp13_S_contig6630:6461..6497Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6630 6462..6497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463913.4016044-CDS-Ecto-sp13_S_contig6630:4305..43951681463913.4016044-CDS-Ecto-sp13_S_contig6630:4305..4395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6630 4306..4395 -
1681463913.4143643-CDS-Ecto-sp13_S_contig6630:5320..55731681463913.4143643-CDS-Ecto-sp13_S_contig6630:5320..5573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6630 5321..5573 -
1681463913.4285848-CDS-Ecto-sp13_S_contig6630:6378..64611681463913.4285848-CDS-Ecto-sp13_S_contig6630:6378..6461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6630 6379..6461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6630.17492.1prot_Ecto-sp13_S_contig6630.17492.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6630 4306..6461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6630.17492.1

>prot_Ecto-sp13_S_contig6630.17492.1 ID=prot_Ecto-sp13_S_contig6630.17492.1|Name=mRNA_Ecto-sp13_S_contig6630.17492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MIVLRSKQPKWSAWQGCHTLAFDRGGERVREPSRKNVSMVAADASPAAAA
AAGAGGKQGKSAASLAGRGSRAGGGNNSEAQQMGGGDKDHADGHRHRPSM
TVASKSTLQVGKISEDHFSLDFCWPLSPLQAFVTAMSIFDG*
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mRNA from alignment at Ecto-sp13_S_contig6630:4189..6497-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6630.17492.1 ID=mRNA_Ecto-sp13_S_contig6630.17492.1|Name=mRNA_Ecto-sp13_S_contig6630.17492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6630:4189..6497- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAAATGGGAGAAAACCGGGGTCGTCCCGCCGGGGATGATCGTCTTAAG
GTCCAAGCAGCCCAAGTGGTCTGCGTGGCAGGGCTGCCACACCCTCGCTT
TCGACAGAGGAGGGGAGAGGTAAGATATGGGAGGGGGAGAGGTGAGACGG
AGGCCGGGATACTTAATACAAGAGGCTGGGGAGAGGTAAGACAGAGGTGT
AAGGCAAAGGCGGGGAGAGGTAAGGCAGAGGCGGGAGAGGAAAGATAATG
GTGAGGCAGCTCAAGATGGACCTAAACCTTACTGGCAACTGGCAGCTTGG
CAGCACCCCGGGGTAGATGAACAGTCGTGTTCCTCCTCCGGTTTAGTGAG
ACGAGCTCTTGTTCTCTGGTGTACGGGGTGCTGTCCTTGTTTTTTTTTTT
TTTGCCAGTCTGCGATCTCGGTTTAGTCATCCTCTTGAAGAATGAAGAAG
ATTGCGATACGTAGAATGATCTCGCAGAGGACTCAGTTTTTTTAAGAAAG
GCTTGGGACAAGGCTGGAATGGTGTGTTCGTCTGATCTGGATTTCTTTTT
CATCTTTCCGGGAGAAAATGTCAAGACCATCACTTCTGTGGAACAAAGCT
GTCAAGTCTGTATCAACGACCCGTCATGTGTGCTCCAAACCCTTCACGAG
TTCATGCCAAAAATTGTTGAGGCTGTGTAGGGACTGTCGAGTATCAAGCG
TGTCATGTGGGTTGTCACAAACTGTCAAGGCTATGTCGAAGCTGTCAAGC
GTGTGTCCTGAGGGAGAGTAAGATGAACAAACACACACACACACACACAC
TTTGCCCACCCCCGCTTCGAGCGCATGAACGCACGCAGCAAAAGCGTTCG
TCTCTCTTCTTGACCTTAAGGATAATACATCAACTCCCCCCGCGAATATA
CCGCGCGGAAAACTCAACCCATAGGGTTCGAGAACCTTCTCGCAAGAACG
TGAGCATGGTTGCCGCAGACGCAAGTCCCGCCGCCGCCGCTGCCGCGGGC
GCCGGAGGCAAGCAGGGGAAGAGCGCGGCGTCATTAGCAGGACGAGGCAG
CAGGGCGGGGGGCGGTAACAATAGCGAAGCACAGCAGATGGGGGGGGGGG
ACAAAGACCACGCGGATGGACACCGCCATCGACCATCAATGACGGTCGCG
TCCAAGTCGACCCTGCAAGTTGGGAAGGTGCGGCGGCACAAGCTCTCTGG
GGGGGAGGTGGTTGGAACGGATTGCGGATGTGTTTCTGTGTGTGCTGTTT
GTGTTTTTGCGTCCAGTACGTTTGTTTTGGGTTGCATCGACGACCACTCG
AAACCGCAGCCTGTTTTGGACAGTCTCCACTCGACGTCGAGGGACGTGAG
CAGAGGGAATTGAAGGGGGGTGGGCGGAGGAGAACACGAGTTTTGGGCAC
GCTTCTTTTTGATCGTGGGGTGCCCGTTTCTGTGCTTCGTCGTGCCGCAT
TGTTGTTGTGCATTTCCGTCGTCGCCGTGTGTTAAAAAAACTGAAGAGTG
CTCTTCTCTCGGGTGGAGAAATGATGCCCCCTCCCTCCTCGTCCCTCTTG
CGGTATCTCCCTAGCGTGGGCTTCGTTTTTTAGTCCCATTTTCGATTGGT
GATTTTTGCTTCCGTCCGGGGTTTTGTGGTAAACCGGGACACGAGGAGAA
CCACCACAGACAATCGCCTCTATCACGTGTAGTATCCTTCGATTTTTCGT
CCATGTCGGCGATCATGGCTACTCACGTTCTCCGTCCTTCCCACTCTCCC
TTTACGCCCCTTCTAAGCAGCCCCTGGCCCCGCCTCCGCCCCCGCCTCTG
CCCCTTGCTGTCTGCTGTCTGCTGTTTGTTGCCGTTTTCTCCCGTATGCT
TCTCTTTTATTGTCTCCCGCTGTTTTGTGTCTCGCATGATTGTTCATCCC
CCCTCTTCTTGCTCTTCTCGTCTTCTTCTCGTTCTTCTTGTTCTTCTCTT
CTTTATCTGCCCGTTCTTCTTGTTTTTCTTGTTCTTTATGTTCTTCCTCT
TGTGTTTCCTCTTATGTCGGTCTTCCGGGCGGTGCTGCCGCTGTTCTGAA
ATCGCCCGGCTGTTACCATCTCCGACGGTGGTGCTGGTTGGTTGTTGGGC
AGATCTCCGAAGACCACTTTAGTCTTGACTTTTGCTGGCCGCTGTCCCCC
CTACAAGCCTTCGTAACAGCTATGAGCATTTTTGACGGTTGAAGTCGGGC
GGAACGTAGGAAGCAGTAGTTAGAGTATGGTGGTTAGGAATAGCTTTATG
TTTCCATTTGTGGCAAGCGAGTTAAGATACCATGTGTTCGTTCGACCCTT
TTGCTACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6630:4189..6497-

>mRNA_Ecto-sp13_S_contig6630.17492.1 ID=mRNA_Ecto-sp13_S_contig6630.17492.1|Name=mRNA_Ecto-sp13_S_contig6630.17492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6630:4189..6497- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTCTTAAGGTCCAAGCAGCCCAAGTGGTCTGCGTGGCAGGGCTG
CCACACCCTCGCTTTCGACAGAGGAGGGGAGAGGGTTCGAGAACCTTCTC
GCAAGAACGTGAGCATGGTTGCCGCAGACGCAAGTCCCGCCGCCGCCGCT
GCCGCGGGCGCCGGAGGCAAGCAGGGGAAGAGCGCGGCGTCATTAGCAGG
ACGAGGCAGCAGGGCGGGGGGCGGTAACAATAGCGAAGCACAGCAGATGG
GGGGGGGGGACAAAGACCACGCGGATGGACACCGCCATCGACCATCAATG
ACGGTCGCGTCCAAGTCGACCCTGCAAGTTGGGAAGATCTCCGAAGACCA
CTTTAGTCTTGACTTTTGCTGGCCGCTGTCCCCCCTACAAGCCTTCGTAA
CAGCTATGAGCATTTTTGACGGTTGA
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