mRNA_Ecto-sp13_S_contig662.17479.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig662.17479.1
Unique NamemRNA_Ecto-sp13_S_contig662.17479.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: D7FIP2_ECTSI (Pre-mRNA-splicing factor 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP2_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.580e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR 141
            GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR
Sbjct:  394 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR 440
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A836CGW5_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.350e-15
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 138
            GRE+I S+NVAHIMNNEAQRKYLVS+KRLMT+LQ+KR D+ PSKKV
Sbjct:  190 GREKIESRNVAHIMNNEAQRKYLVSIKRLMTWLQEKRTDVPPSKKV 235
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A482UP73_9ARCH (Prp18 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UP73_9ARCH)

HSP 1 Score: 70.9 bits (172), Expect = 9.760e-15
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 138
            GRERIS+  VAHIMNNE++RKYL SVKRLMT+ Q KRPD+APS KV
Sbjct:   58 GRERISTSKVAHIMNNESERKYLTSVKRLMTFAQSKRPDVAPSMKV 103
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A4D9CN32_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CN32_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.300e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKK 135
            GRE+ISS  VAHIMNNE QRKYL S+KRLM + Q+KRPD+ PSKK
Sbjct:   73 GREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 117
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: W7U1L9_9STRA (Pre-mRNA-splicing factor 18 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1L9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.470e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKK 135
            GRE+ISS  VAHIMNNE QRKYL S+KRLM + Q+KRPD+ PSKK
Sbjct:   76 GREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A7R9UDV4_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDV4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.950e-13
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 138
            GRE+ISSKNVAHIMNNE QRKYL SVKRLM Y Q +RPD+ PS KV
Sbjct:  356 GREKISSKNVAHIMNNELQRKYLTSVKRLMNYAQRRRPDVPPSMKV 401
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A7S2Y0T3_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.410e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 138
            G ++I+ KNVAH+MNNEAQRK+L S+KRLM Y Q KRPD+ PSKKV
Sbjct:   70 GHDKINVKNVAHVMNNEAQRKFLTSIKRLMRYNQTKRPDVPPSKKV 115
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: F0YA06_AURAN (Pre-mRNA-splicing factor 18 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA06_AURAN)

HSP 1 Score: 68.2 bits (165), Expect = 3.220e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 RERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 138
            RE +  KNVAH+MNNE QRKYL S+KRLM + QD+RPD+APSKKV
Sbjct:  299 RENVEQKNVAHVMNNEMQRKYLTSMKRLMKFAQDQRPDVAPSKKV 343
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A7S4E8L3_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8L3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.680e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 RERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 138
            RE++  KNVAH+MN+EAQRKYL S KRLM + QD+RPD+APSKKV
Sbjct:  260 REKVEQKNVAHVMNDEAQRKYLTSFKRLMKFEQDRRPDVAPSKKV 304
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BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: K0TC31_THAOC (Pre-mRNA-splicing factor 18 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TC31_THAOC)

HSP 1 Score: 67.8 bits (164), Expect = 4.890e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR 141
            GR RI S NVAH+MN+E  RKYL SVKRLM Y Q+KRPD+ PSKKVR
Sbjct:  334 GRARIESSNVAHVMNSELHRKYLTSVKRLMRYAQNKRPDVNPSKKVR 380
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIP2_ECTSI5.580e-20100.00Pre-mRNA-splicing factor 18 n=2 Tax=Ectocarpus Tax... [more]
A0A836CGW5_9STRA2.350e-1580.43Pre-mRNA-splicing factor 18 n=1 Tax=Tribonema minu... [more]
A0A482UP73_9ARCH9.760e-1576.09Prp18 domain-containing protein n=1 Tax=archaeon T... [more]
A0A4D9CN32_9STRA2.300e-1373.33Pre-mRNA-splicing factor 18 n=1 Tax=Nannochloropsi... [more]
W7U1L9_9STRA2.470e-1373.33Pre-mRNA-splicing factor 18 n=2 Tax=Nannochloropsi... [more]
A0A7R9UDV4_9STRA2.950e-1378.26Pre-mRNA-splicing factor 18 n=1 Tax=Pinguiococcus ... [more]
A0A7S2Y0T3_9STRA4.410e-1369.57Pre-mRNA-splicing factor 18 n=1 Tax=Fibrocapsa jap... [more]
F0YA06_AURAN3.220e-1271.11Pre-mRNA-splicing factor 18 n=1 Tax=Aureococcus an... [more]
A0A7S4E8L3_9STRA3.680e-1271.11Pre-mRNA-splicing factor 18 n=1 Tax=Pelagomonas ca... [more]
K0TC31_THAOC4.890e-1272.34Pre-mRNA-splicing factor 18 n=1 Tax=Thalassiosira ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig662contigEcto-sp13_S_contig662:22674..22817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score92.4
Seed ortholog evalue6e-17
Seed eggNOG ortholog2880.D7FIP2
Preferred namePRPF18
Model size144
KEGG koko:K10738,ko:K12817,ko:K20792
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008298,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051246,GO:0051248,GO:0051641,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0071020,GO:0071021,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071033,GO:0071048,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901575,GO:1990904
Exons1
EggNOG free text desc.nuclear retention of unspliced pre-mRNA at the site of transcription
EggNOG OGsKOG2808@1,KOG2808@2759
EC3.6.4.12
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463912.1952329-CDS-Ecto-sp13_S_contig662:22673..228171681463912.1952329-CDS-Ecto-sp13_S_contig662:22673..22817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 22674..22817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig662.17479.1prot_Ecto-sp13_S_contig662.17479.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig662 22674..22817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig662.17479.1

>prot_Ecto-sp13_S_contig662.17479.1 ID=prot_Ecto-sp13_S_contig662.17479.1|Name=mRNA_Ecto-sp13_S_contig662.17479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR*
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mRNA from alignment at Ecto-sp13_S_contig662:22674..22817-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig662.17479.1 ID=mRNA_Ecto-sp13_S_contig662.17479.1|Name=mRNA_Ecto-sp13_S_contig662.17479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:22674..22817- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGCGAGCGTATCTCATCAAAAAACGTGGCCCACATCATGAACAACGA
GGCCCAGCGCAAGTATTTGGTGTCGGTGAAACGGCTCATGACCTATTTGC
AGGACAAGCGTCCGGACATCGCCCCGAGTAAAAAGGTCCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig662:22674..22817-

>mRNA_Ecto-sp13_S_contig662.17479.1 ID=mRNA_Ecto-sp13_S_contig662.17479.1|Name=mRNA_Ecto-sp13_S_contig662.17479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:22674..22817- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGCGAGCGTATCTCATCAAAAAACGTGGCCCACATCATGAACAACGA
GGCCCAGCGCAAGTATTTGGTGTCGGTGAAACGGCTCATGACCTATTTGC
AGGACAAGCGTCCGGACATCGCCCCGAGTAAAAAGGTCCGCTGA
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