prot_Ecto-sp13_S_contig662.17479.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig662.17479.1
Unique Nameprot_Ecto-sp13_S_contig662.17479.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length48
Homology
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: D7FIP2_ECTSI (Pre-mRNA-splicing factor 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP2_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.580e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR 47
            GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR
Sbjct:  394 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR 440          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A836CGW5_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.350e-15
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 46
            GRE+I S+NVAHIMNNEAQRKYLVS+KRLMT+LQ+KR D+ PSKKV
Sbjct:  190 GREKIESRNVAHIMNNEAQRKYLVSIKRLMTWLQEKRTDVPPSKKV 235          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A482UP73_9ARCH (Prp18 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UP73_9ARCH)

HSP 1 Score: 70.9 bits (172), Expect = 9.760e-15
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 46
            GRERIS+  VAHIMNNE++RKYL SVKRLMT+ Q KRPD+APS KV
Sbjct:   58 GRERISTSKVAHIMNNESERKYLTSVKRLMTFAQSKRPDVAPSMKV 103          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A4D9CN32_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CN32_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.300e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKK 45
            GRE+ISS  VAHIMNNE QRKYL S+KRLM + Q+KRPD+ PSKK
Sbjct:   73 GREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 117          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: W7U1L9_9STRA (Pre-mRNA-splicing factor 18 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1L9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.470e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKK 45
            GRE+ISS  VAHIMNNE QRKYL S+KRLM + Q+KRPD+ PSKK
Sbjct:   76 GREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A7R9UDV4_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDV4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.950e-13
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 46
            GRE+ISSKNVAHIMNNE QRKYL SVKRLM Y Q +RPD+ PS KV
Sbjct:  356 GREKISSKNVAHIMNNELQRKYLTSVKRLMNYAQRRRPDVPPSMKV 401          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A7S2Y0T3_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.410e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 46
            G ++I+ KNVAH+MNNEAQRK+L S+KRLM Y Q KRPD+ PSKKV
Sbjct:   70 GHDKINVKNVAHVMNNEAQRKFLTSIKRLMRYNQTKRPDVPPSKKV 115          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: F0YA06_AURAN (Pre-mRNA-splicing factor 18 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA06_AURAN)

HSP 1 Score: 68.2 bits (165), Expect = 3.220e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    2 RERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 46
            RE +  KNVAH+MNNE QRKYL S+KRLM + QD+RPD+APSKKV
Sbjct:  299 RENVEQKNVAHVMNNEMQRKYLTSMKRLMKFAQDQRPDVAPSKKV 343          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: A0A7S4E8L3_9STRA (Pre-mRNA-splicing factor 18 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8L3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.680e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 0
Query:    2 RERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKV 46
            RE++  KNVAH+MN+EAQRKYL S KRLM + QD+RPD+APSKKV
Sbjct:  260 REKVEQKNVAHVMNDEAQRKYLTSFKRLMKFEQDRRPDVAPSKKV 304          
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Match: K0TC31_THAOC (Pre-mRNA-splicing factor 18 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TC31_THAOC)

HSP 1 Score: 67.8 bits (164), Expect = 4.890e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR 47
            GR RI S NVAH+MN+E  RKYL SVKRLM Y Q+KRPD+ PSKKVR
Sbjct:  334 GRARIESSNVAHVMNSELHRKYLTSVKRLMRYAQNKRPDVNPSKKVR 380          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig662.17479.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIP2_ECTSI5.580e-20100.00Pre-mRNA-splicing factor 18 n=2 Tax=Ectocarpus Tax... [more]
A0A836CGW5_9STRA2.350e-1580.43Pre-mRNA-splicing factor 18 n=1 Tax=Tribonema minu... [more]
A0A482UP73_9ARCH9.760e-1576.09Prp18 domain-containing protein n=1 Tax=archaeon T... [more]
A0A4D9CN32_9STRA2.300e-1373.33Pre-mRNA-splicing factor 18 n=1 Tax=Nannochloropsi... [more]
W7U1L9_9STRA2.470e-1373.33Pre-mRNA-splicing factor 18 n=2 Tax=Nannochloropsi... [more]
A0A7R9UDV4_9STRA2.950e-1378.26Pre-mRNA-splicing factor 18 n=1 Tax=Pinguiococcus ... [more]
A0A7S2Y0T3_9STRA4.410e-1369.57Pre-mRNA-splicing factor 18 n=1 Tax=Fibrocapsa jap... [more]
F0YA06_AURAN3.220e-1271.11Pre-mRNA-splicing factor 18 n=1 Tax=Aureococcus an... [more]
A0A7S4E8L3_9STRA3.680e-1271.11Pre-mRNA-splicing factor 18 n=1 Tax=Pelagomonas ca... [more]
K0TC31_THAOC4.890e-1272.34Pre-mRNA-splicing factor 18 n=1 Tax=Thalassiosira ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.940.10coord: 1..41
e-value: 3.7E-12
score: 48.5
NoneNo IPR availablePANTHERPTHR13007:SF19PRE-MRNA-SPLICING FACTOR 18coord: 1..44
NoneNo IPR availableSUPERFAMILY47938Functional domain of the splicing factor Prp18coord: 1..38
IPR004098Prp18PFAMPF02840Prp18coord: 1..38
e-value: 6.0E-13
score: 49.1
IPR039979Pre-mRNA-splicing factor 18PANTHERPTHR13007PRE-MRNA SPLICING FACTOR-RELATEDcoord: 1..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig662contigEcto-sp13_S_contig662:22674..22817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig662.17479.1mRNA_Ecto-sp13_S_contig662.17479.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig662 22674..22817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig662.17479.1 ID=prot_Ecto-sp13_S_contig662.17479.1|Name=mRNA_Ecto-sp13_S_contig662.17479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
GRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKKVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004098Prp18
IPR039979PRPF18