mRNA_Ecto-sp13_S_contig662.17475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig662.17475.1
Unique NamemRNA_Ecto-sp13_S_contig662.17475.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: D7FIN8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN8_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.640e-27
Identity = 95/122 (77.87%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    4 NTL-LEGGADKHTLSGDGQAPLHAAATRGSVAVTQALLASGAQVNLPRDKDGSSALSIAALNVHADVVELLIRRGADLGATDNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDREFRTPL 366
            NTL LEGGAD H           AAATRGSVA TQ LLA+GA VNLPRDKDGSSALSIAALN HADVVELLIRRGADLGAT  G XXXXXXXXXXXXXXXXXXXXXXX     LDR+FRTPL
Sbjct:  307 NTLFLEGGADMHXXXXXXXXXXXAAATRGSVAATQVLLAAGAHVNLPRDKDGSSALSIAALNRHADVVELLIRRGADLGATGYGGXXXXXXXXXXXXXXXXXXXXXXXVSIEALDRDFRTPL 428          
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: A0A6H5KQT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.990e-27
Identity = 61/83 (73.49%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    1 INTLLEGGADKHTLSGDGQAPLHAAATRGSVAVTQALLASGAQVNLPRDKDGSSALSIAALNVHADVVELLIRRGADLGATDN 249
            INTLLEGGA++++LSGDG+APLH AA  GSVA TQALLA+GA V+LP DKDGSS LSIAALN HADV ++LIR  A LGATD+
Sbjct:   21 INTLLEGGANENSLSGDGEAPLHVAAACGSVAATQALLAAGASVDLPFDKDGSSPLSIAALNGHADVAKVLIRHEAGLGATDS 103          
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: A0A7S0TFE4_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TFE4_HEMAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.800e-8
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   61 PLHAAATRGSVAVTQALLASGAQVNLPRDKDGSSALSIAALNVHADVVELLIRRGADLGATD 246
            PLH AA+RG+V   + LL   A +NL    DG +AL  A    HADVV LL+ RGAD GATD
Sbjct:   46 PLHVAASRGAVNACRTLLDHKASINLAEGSDGYTALHYACGEGHADVVRLLLDRGADAGATD 107          
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: D8LEE7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.760e-7
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1
Query:  130 VNLPRDKDGSSALSIAALNVHADVVELLIRRGADLGATD 246
            V+LP DKDGSS LSIAALN HADV E+L R GA LGATD
Sbjct:  350 VDLPADKDGSSPLSIAALNGHADVTEVLNRHGAGLGATD 388          
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: A0A6H5KTD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD7_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.590e-6
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    1 INTLLEGGADKHTLSGDGQAPLHAAATRGSVAVTQALLASGAQVNLPRDKDGSSALSIAALNVHADVVELLIRRGADLGATD 246
            + TLL  GAD  +   +G+ PL+ A   G VAV +ALLA+GA V+    +   + L  AA   HA+V+ LL+ RGA   A D
Sbjct:   67 VRTLLIEGADPDSFDSNGRTPLYLACLLGKVAVARALLAAGAHVSRVVKEPKDAPLDAAATEGHAEVMRLLVERGAVEPAVD 148          
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: A0A194SBG8_RHOGW (ACB domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194SBG8_RHOGW)

HSP 1 Score: 53.5 bits (127), Expect = 5.340e-6
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   22 GADKHTLSGDGQAPLHAAATRGSVAVTQALLASGAQVNLPRDKDGSSALSIAALNVHADVVELL 213
            G D +     G APLH A  RG   V +ALLA GA  +LP D+DG++AL +A L  HAD+VELL
Sbjct:  157 GVDLNERDSYGYAPLHLATDRGHADVVKALLAHGADRSLP-DEDGNTALDLARLAEHADLVELL 219          
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: A0A5C3NBI2_9AGAM (Asparaginase n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3NBI2_9AGAM)

HSP 1 Score: 53.9 bits (128), Expect = 7.160e-6
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   46 GDGQAPLHAAATRGSVAVTQALLASGAQVNLPRDKDGSSALSIAALNVHADVVELLIRRGADLGATD 246
            G G++PLH AA  GS+     LL +GA V+L RD  G +AL  AA   H D+V++L++ GA+LG +D
Sbjct:  578 GSGRSPLHTAAVNGSMECVGKLLEAGALVHL-RDALGHTALYYAARQGHEDIVDILVKAGANLGGSD 643          
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: A0A428PG23_9HYPO (HET domain-containing protein n=1 Tax=Fusarium sp. AF-6 TaxID=1325737 RepID=A0A428PG23_9HYPO)

HSP 1 Score: 52.0 bits (123), Expect = 3.600e-5
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   10 LLEGGADKHTLSGDGQAPLHAAATRGSVAVTQALLASGAQVNLPRDKDGSSALSIAALNVHADVVELLIRRGADLGATD 246
            LLE GAD   L   GQ+PLH AA  G V V   L+       L  + +G +AL +A L  H D+V+LL+R   DL +TD
Sbjct:  380 LLEAGADPDALDWRGQSPLHLAAQHGYVEVASLLMKRSDASIL--NSEGFTALHLALLESHNDMVKLLVRENDDLHSTD 456          
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Match: A0A0C3PHF4_PISTI (Asparaginase n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3PHF4_PISTI)

HSP 1 Score: 51.2 bits (121), Expect = 6.250e-5
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   10 LLEGGADKHTLSGDGQAPLHAAATRGSVAVTQALLASGAQVNLPRDKDGSSALSIAALNVHADVVELLIRRGADLGATD 246
            ++ GG       G  ++PLH AA  GS A    LL +GA V+L RD  G +AL  AA   +AD+V+LL+  GA+LG  +
Sbjct:  548 VIPGGTINCLEPGSNRSPLHVAALNGSTASVGCLLKAGALVHL-RDNLGHTALYYAARQGYADIVDLLVSAGANLGGLE 625          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig662.17475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FIN8_ECTSI3.640e-2777.87Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KQT5_9PHAE5.990e-2773.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0TFE4_HEMAN1.800e-853.23Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
D8LEE7_ECTSI1.760e-776.92Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KTD7_9PHAE1.590e-641.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A194SBG8_RHOGW5.340e-651.56ACB domain-containing protein n=1 Tax=Rhodotorula ... [more]
A0A5C3NBI2_9AGAM7.160e-646.27Asparaginase n=1 Tax=Heliocybe sulcata TaxID=5364 ... [more]
A0A428PG23_9HYPO3.600e-543.04HET domain-containing protein n=1 Tax=Fusarium sp.... [more]
A0A0C3PHF4_PISTI6.250e-541.77Asparaginase n=1 Tax=Pisolithus tinctorius Marx 27... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig662contigEcto-sp13_S_contig662:10178..10549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score114.8
Seed ortholog evalue2.9e-23
Seed eggNOG ortholog2880.D7FIN8
Model size372
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size372
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.8840196-CDS-Ecto-sp13_S_contig662:10177..105491681463911.8840196-CDS-Ecto-sp13_S_contig662:10177..10549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig662 10178..10549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig662.17475.1prot_Ecto-sp13_S_contig662.17475.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig662 10178..10549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig662.17475.1

>prot_Ecto-sp13_S_contig662.17475.1 ID=prot_Ecto-sp13_S_contig662.17475.1|Name=mRNA_Ecto-sp13_S_contig662.17475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
INTLLEGGADKHTLSGDGQAPLHAAATRGSVAVTQALLASGAQVNLPRDK
DGSSALSIAALNVHADVVELLIRRGADLGATDNGGSTVLHQAALNNHAGV
VDVLYKAGARIEALDREFRTPLS*
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mRNA from alignment at Ecto-sp13_S_contig662:10178..10549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig662.17475.1 ID=mRNA_Ecto-sp13_S_contig662.17475.1|Name=mRNA_Ecto-sp13_S_contig662.17475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:10178..10549- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTAACACGCTATTGGAGGGTGGGGCTGACAAGCACACGCTTTCTGGTGA TGGTCAAGCACCACTTCACGCCGCAGCGACGCGCGGTAGCGTTGCTGTGA CACAAGCCCTGTTGGCTTCTGGCGCACAAGTTAACCTCCCGCGTGACAAA GACGGTTCGTCTGCTCTGTCGATAGCCGCGTTGAATGTGCACGCCGACGT GGTGGAACTTTTGATTCGTCGCGGAGCGGATTTGGGCGCGACGGACAATG GGGGCTCGACTGTTTTGCACCAGGCTGCGTTGAACAATCATGCCGGCGTT GTTGATGTTCTTTACAAGGCTGGGGCGAGGATCGAGGCGCTGGACAGGGA GTTCAGGACGCCTCTGTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig662:10178..10549-

>mRNA_Ecto-sp13_S_contig662.17475.1 ID=mRNA_Ecto-sp13_S_contig662.17475.1|Name=mRNA_Ecto-sp13_S_contig662.17475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig662:10178..10549- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTAACACGCTATTGGAGGGTGGGGCTGACAAGCACACGCTTTCTGGTGA
TGGTCAAGCACCACTTCACGCCGCAGCGACGCGCGGTAGCGTTGCTGTGA
CACAAGCCCTGTTGGCTTCTGGCGCACAAGTTAACCTCCCGCGTGACAAA
GACGGTTCGTCTGCTCTGTCGATAGCCGCGTTGAATGTGCACGCCGACGT
GGTGGAACTTTTGATTCGTCGCGGAGCGGATTTGGGCGCGACGGACAATG
GGGGCTCGACTGTTTTGCACCAGGCTGCGTTGAACAATCATGCCGGCGTT
GTTGATGTTCTTTACAAGGCTGGGGCGAGGATCGAGGCGCTGGACAGGGA
GTTCAGGACGCCTCTGTCGTAG
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