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Homology
BLAST of mRNA_Ecto-sp13_S_contig6614.17466.1 vs. uniprot
Match: A0A6H5JTS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS8_9PHAE) HSP 1 Score: 514 bits (1325), Expect = 1.110e-181 Identity = 261/283 (92.23%), Postives = 271/283 (95.76%), Query Frame = 1
Query: 1 MCRYASRWPCVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGLDALPSPITEDLHLSFDVGAIVCEKLVTLTVGGGTELAIHVSPGSTSEGLGGGE--DEGYRDPPVSGLRLRNVRIVVKSGAMLSVGVAGDISSDDMGYAGPGEGTSSLTLEGAAPQESNGGALEVEEGGAAVFLVPIHLEGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGSQGQEAYSCGGGVSVGGTGRVEFLELASFDENSAWRGGALCNRGWAKFFRRSFFNGNRASGGAS 843
MCRYASRW CVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGL+ALPS IT+DLHLSFDVGAIVCEKLVTLTVGGG ELAIHVSPGSTSEGLGGGE DEG RDPPVSGLRLRNVR+ VKSGAMLSVGVAGDISSD MGYAGPGEGTS+LTLEG APQ+SNGGALEVEEGGAAVFLVP+H EGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGS+GQEA+SCGGGVSVGGTGRVEF ELASF+ENSAWRGGALCNRGWAKFFRRSFFNGN+ASGG S
Sbjct: 1 MCRYASRWACVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGLEALPSLITQDLHLSFDVGAIVCEKLVTLTVGGGIELAIHVSPGSTSEGLGGGEGEDEGCRDPPVSGLRLRNVRVGVKSGAMLSVGVAGDISSDGMGYAGPGEGTSALTLEGVAPQDSNGGALEVEEGGAAVFLVPVHFEGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGSRGQEAHSCGGGVSVGGTGRVEFSELASFEENSAWRGGALCNRGWAKFFRRSFFNGNQASGGTS 283
BLAST of mRNA_Ecto-sp13_S_contig6614.17466.1 vs. uniprot
Match: D7G5R2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R2_ECTSI) HSP 1 Score: 482 bits (1240), Expect = 1.170e-166 Identity = 252/281 (89.68%), Postives = 262/281 (93.24%), Query Frame = 1
Query: 199 EKLVTLTVGGGTELAIHVSPGSTSEGLG--GGEDEGYRDPPVSGLRLRNVRIVVKSGAMLSVGVAGDISSDDMGYAGPGEGTSSLTLEGAAPQESNGGALEVEEGGAAVFLVPIHLEGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGSQGQEAYSCGGGVSVGGTGRVEFLELASFDENSAWRGGALCNRGWAKFFRRSFFNGNRASGGASTRVGGNGGAVFTEEGSTTIFTRRSTMFRNWAAGSGGSVYNAGVSTFETSATFRGNTAAAAATTE 1035
++LVTLTVGGG ELAIHVSPGS SEG+G DEGYRDPPVSGLRLRNVR+VVKSGAMLSVGVAGD S DDMGYAGPGEGTS+LTLEGAAPQ SNGGALEVEEGGAAVFLVP+H EGNSVQNGYSGGAFH DGEVTFENAAHFVGNRALGQGS+GQEA+SCGGGVSVGGTGRVEF ELASF+ENSAW GGALCNRGWAKFFRRSFFNGNRASGGASTRVG +GGAVFTEEGSTTIFTRRSTM RNWAAGSGGSVYNAGVSTFETSA FRGNTAAAAA E
Sbjct: 16 QQLVTLTVGGGIELAIHVSPGSVSEGVGEXXXXDEGYRDPPVSGLRLRNVRVVVKSGAMLSVGVAGDYSLDDMGYAGPGEGTSALTLEGAAPQHSNGGALEVEEGGAAVFLVPVHFEGNSVQNGYSGGAFHADGEVTFENAAHFVGNRALGQGSRGQEAHSCGGGVSVGGTGRVEFSELASFEENSAWTGGALCNRGWAKFFRRSFFNGNRASGGASTRVGADGGAVFTEEGSTTIFTRRSTMLRNWAAGSGGSVYNAGVSTFETSAAFRGNTAAAAARVE 296
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1035 |
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| Cds size | 1035 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463911.2413712-CDS-Ecto-sp13_S_contig6614:1996..2200 | 1681463911.2413712-CDS-Ecto-sp13_S_contig6614:1996..2200 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6614 1997..2200 + |
| 1681463911.2511308-CDS-Ecto-sp13_S_contig6614:5264..5531 | 1681463911.2511308-CDS-Ecto-sp13_S_contig6614:5264..5531 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6614 5265..5531 + |
| 1681463911.265313-CDS-Ecto-sp13_S_contig6614:6109..6235 | 1681463911.265313-CDS-Ecto-sp13_S_contig6614:6109..6235 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6614 6110..6235 + |
| 1681463911.2748525-CDS-Ecto-sp13_S_contig6614:6711..6949 | 1681463911.2748525-CDS-Ecto-sp13_S_contig6614:6711..6949 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6614 6712..6949 + |
| 1681463911.2850215-CDS-Ecto-sp13_S_contig6614:7476..7676 | 1681463911.2850215-CDS-Ecto-sp13_S_contig6614:7476..7676 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6614 7477..7676 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6614.17466.1 >prot_Ecto-sp13_S_contig6614.17466.1 ID=prot_Ecto-sp13_S_contig6614.17466.1|Name=mRNA_Ecto-sp13_S_contig6614.17466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp
MCRYASRWPCVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGLDALPSP ITEDLHLSFDVGAIVCEKLVTLTVGGGTELAIHVSPGSTSEGLGGGEDEG YRDPPVSGLRLRNVRIVVKSGAMLSVGVAGDISSDDMGYAGPGEGTSSLT LEGAAPQESNGGALEVEEGGAAVFLVPIHLEGNSVQNGYSGGAFHTDGEV TFENAAHFVGNRALGQGSQGQEAYSCGGGVSVGGTGRVEFLELASFDENS AWRGGALCNRGWAKFFRRSFFNGNRASGGASTRVGGNGGAVFTEEGSTTI FTRRSTMFRNWAAGSGGSVYNAGVSTFETSATFRGNTAAAAATTE back to topmRNA from alignment at Ecto-sp13_S_contig6614:1997..7676+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig6614.17466.1 ID=mRNA_Ecto-sp13_S_contig6614.17466.1|Name=mRNA_Ecto-sp13_S_contig6614.17466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5680bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6614:1997..7676+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTGCAGGTATGCTTCGCGGTGGCCGTGTGTCCTGGCGCTTGCCATCTC
CACCGGAGCTCAGCCTCCCCAGTGCACACGGCCAAGGCGAAGAGCGGCTG
GGACGGTGCCCATTTCAGACTGCGCGGGGCTGGACGCGTTGCCGTCGCCG
ATAACGGAGGATCTTCACCTCTCCTTTGACGTTGGAGCTATCGTGTGTGA
GAAGGTGTGGAAGTTTGAGCGCCGAAAGACGTCCGCGGGCAACCTATCAT
CGCGTGAGAGGAGAAGGGAACATTTTCGCGGAGAGAGGTCGTTTTTTTCT
TGATATGCTGGCAGTACATGTTCGGAGACACCAAGAGCACCAGGGCTAAA
CCTTTACGAATGCCAAACACTTATTGTACGGTGGTAGCAAAGTAGAGGCG
GAACGCCGTATGTACCCGGCCTGTGGAGCCAAAGTCTCTCTTTTTCTTCT
CATCAGAGCGGGGTGTGGGGGCAGGCTGTCTTCTCACTGCAATTGCACAT
CGTAAAGCATCAAGTGTACCTGTACTGCTGTGGTGGGAGATCTAAGCAAG
GGAATATCGCCCAATGGATTAGTTGTTTGTGGTTTGGGGAATATGTTTGG
TTATGGGTTTTTTGGGTTAGGGGAGACGATATGTGTCTCTGTGCTAACAT
TGCTCTTTAAATGCATGCATCGCATACAGCAGTACATGAAATCGCGGACA
GCAATCACGAAAGAGAGAAAGGAAAATTGCCACAGCAACAGATTGCATTG
CCAGCAGCTAAATCACGACTTCCTCTTCACCAGGAACCCCAGTTCTTATT
TTCCACACGGTTGAACTTTTACAGCAGTCAATTGGGGAGAATTGACTGGC
GCACCGAAAAAATGCGAACAAGAATGTTCCTGCCCGTTATCTCTGTGCGG
ACGTGTGATGAAGCATATCGTGCACGGTAAACCAAAAAACAATCTGCCAA
TGCATAGGTAGCGTGTAGAAACAGTAGTAGCGTGACAGTTACTTCAGTTC
CTGTTGTGAGCGAGAGATAGAGGAGGGGACAGCGTGTTCAAGAATAAACT
TTTATAAAGTGAGAATTTTGGTTGACGGTGCTGTACCACTGTATCGAACA
TTCATGTTTCTCCGGTGGCGGGGGAACAAAAACACTCACCGTTACTTCGC
ATTGTCGGTGGTGCGGGTGTTGTGTGCTGTCTCTTGTCCTGGAGAGAACG
AGCTGCATATCTAGTGCTGTCCCTCTGCCCACGTCGCCAACCCCTCTCAG
TGGTCGAACCGGCATGATTACAGTCGTTTTGTTTAGGCCCAAGCTTCACT
GTCATCCGTCATCTACAGGGAGAGCCCGCTCTTCTAGGACAATGTATGTA
CATACATGCCTCAAGGCTATCGCCGAGGTTCTCACAATAGGTGGTTCCAT
GGTGGGCTGCAAATGATCGTTTAATGCACATGTAGGTTTTGCAGTCTGTG
GGGGTTCTTGACCGGGCCCACAATCATGCTCCAGTTCTGTCAAACTGTCT
GTATCTATGTTTTAGACTTTGGATCCACTTTTTGTTTTTCTATAATGGAA
CTAAATGAGTGTTGTGTGCGTAGCTGTTGGTTTGGAACCGAGCAAAAACA
AATCTACAGCAGCCCGGTTCGAACCAGGAACCAGCAGTTTCGAAAGTATG
CGTTGCATCGCTGCATCCATCGTGGAAAATAGTCTCTATCCATAGGTGTA
AATGTTCTCCTCCGCCGCCCCGCCTACGCACCTCATCACAGGTTCCTTGG
GATTTATGATGGAAGCCTTGAGGTCATATGAATGAATGTGCAGGAAGTTT
CGTAACAGGTTGCCGTCAACTACGTCTTTCCATCAAGTGCTAAACACCCC
TCCCTCGCCCTCATGATAGTCTGCCTTTACAAGCATTTTGCATTTTCAAC
CGCGCTAACAGACTGGCGTCTTTTCACCCTTCAGCCGGTTAGCGCGGTCG
ATGCCATTGACAAAAAGACACACACACACCTCTGGCGTTCTACCTGTGAA
GTTGGCAGGGACCATTTTTCATTTCCTGCTGTTTAGTGTGTTGACCAATA
TTATCCTCGCTCGGCTTGGTGCTTCCCGAAAGGAACACGGAGTATATCTG
TAATACATACATACATGTTGTAGTGCTGTCGATGACTGGGTTGCTTTTGT
GCTCCTTCGGGTGGCACGGGAAAGTTATGCTTTGTCTCCCGCGCTATTAG
ACATACATCATGAAGCACCCGGCAGGGGTTGTGCCGGAGCAGGGCACGGC
GGGCTCGAGATGCTGCAGCTAAGAAGAGAGAGACACACGCACTGACAGAC
TGACACACAAACTGAGCGACCATCCAGCGGACAGACAGACAGAACGCGCA
CCAATAACCTTGCGTGTCGATTCCCAACCAAATCCCCTTTTCGGTTCAAC
GCTCCCTCACCCGGGCGACCTACCATTGTACCACTGTACTGTACATAGCT
CCACGTCTCTCGCCATGTGAGCGGTCGAAATCCGCTGCTGGTCGCGTCGG
TCGCATGTATGTACGAAGTGCCAGGTAGAATTAATTGACTGTGAGATCGA
ATGCGAAGCGTACGGAATGGCGGATTTGCAACTGTTCTCTGTGCTGAGAG
AAGGTGCTTCGGCTCTTTCGATGTTTCGGTGCTTCAGTAGCCTTCCTTCG
CAGGATTCATCGTCGTATGTAAACATGTGGGGTAAAGCATGCAATCGGGG
AAGTCGGGTTAGGGGTTGGGCCAGGCGATAACGTCTGCGCCCCCCCTCCC
TGTTCTATTTCCTCATAAACTAATTACTCTCGCAAAGGCGGTCCCAGTAC
TTGTGATTCGTTACCCCCCGTTGACATTTTCGTCGTGGTGATGGTTCGTT
GATCGGTGTCGATGTACACGGCGGTGTTTATAGCTCGTCGCCTCCGAGGG
GAAATGCACGGGGAGCGCGCTTGCCATCCCAAAGTTGCCGAGTCTCCCGT
CGGCCCTCTACTCATCGTTCCGAATTTGACCCGCAGGGTTGGTAGCTGTC
GGACTCGAACACTGGTCCTTCTTAGGTCGTTCGGTGCTGGCTTGCAAAAC
GCGAAACAGATATGTAGAAGGACCATCAGGGCCGCACCACGTCGCCAGCC
TGTGCCCACCCGAGCACACAACCCACCTCCCCTATTACGAATGCGCGTGC
CCCCTTGCCAATGGAAACAACTTCAATGCAACGAAACCCAACCAACGACA
GCAGCAGTTCTGCGAATTTAATCTCCTTGTTCTTTTTCTGGTCGCGGCTT
TGCTTGCTGTGCCGGCAGCTCGTCACGCTAACAGTCGGCGGTGGCACCGA
GCTAGCGATCCACGTTAGCCCCGGCAGCACAAGCGAAGGGTTGGGTGGAG
GCGAAGACGAAGGGTACAGGGATCCCCCCGTGTCGGGATTGAGGCTCCGC
AACGTCCGCATCGTCGTGAAGAGCGGTGCGATGCTCAGCGTCGGGGTGGC
CGGCGATATTTCGTCGGACGACATGGGATACGCGGGGCCTGGAGAAGGCA
CCAGCTCCCTGACGCTAGAGGGCGCGGCGCCACAGGTGCGTTCTACAACA
TTCTGCTCGCATAGTACTGCAATTTGTATTCCCTTTCCAATCGGCGGGGG
TGGCGGTATCTACGGTCACACTTCATTGCATCTTGTTTCAATCATAGGCG
ACCGTTAGGAGGGAAATCGTGTTCTCTTGTGTGGCCCACGTGTATCACAT
GAATCACGTGGCGGTTATTTGTTTGTCTGGTTCTCGTTCGGGCCTCCGTC
CCACCAACCGGAAGCGACGAGCCTGGTTCCGCTGTACGGTCTTGAGATGT
GCTTCGTACAGTCCATATTCCCGGGCTCCAAATTCCCTTGTACGGTCTCA
AGCGCTGTTTTAAAATCCCCGAAGCCGAATTTCCCTGGTACATTGCGCGG
TAGTGTGAAATGAAAATCCATTCCGAATCCGATGTGGTACAAGTAGCGCT
TGAAGATGGTCTTCCATCGTTCTCTCGCACGCCAGCCCACCATCAATCGT
TTTTCTCGCTCGTGATGATCTGTCGGACGAATTTAGATCGAGCCCAGCGC
CGACATCGAAACCTAGGTTTGCATGATCACATCACGCCCTCCCCCCCCAA
ACCTCTCACGCAGGAGTCGAATGGAGGCGCACTGGAGGTGGAGGAGGGGG
GCGCGGCTGTGTTTCTAGTGCCGATTCACTTGGAGGGGAACTCGGTCCAG
AACGGCTACTCCGGCGGGGCGTTCCACACGGACGGAGAGGTACCTACCAT
ATCTGCCACCTGCCTGCCGTGTTTGCCCGCTTTCTGTCCTGTTCGCGCAG
CCTCCGAGGGCTGTTAGAACATGTTTTCGTGGTTGTATCGAACTGTCAAG
GCGCGCGGGGATCTGCTGAGTGCGTCAAGGCGGAGTATGATCTGTCTGGT
TTGACGAGATTGCCCCGCTATTTTTGTGTGCGATCAGTAGAGGAGAGGGT
TCTGAACGGCCCAGCGCGGGAGGTGTTGCATGGGTCTCAGTCCATCCGCT
CGCAAATCTAATGTCGTGCAACGGTTGACACCTTCTCAAATCCCCGTTTA
ATGACTATCTGGACCACTCAGAACGTTCCGCGGAACTCGCGCCAGAACTG
CTGTGACATCGTTGCCGCGTTTGCCGAACGAGCGCCCCCTGTCCCGTACA
TTGTAAGGTTGCCACTGATGTGTATCCGACGCGTTCACCCCCTCCGGTGG
ATTCGTCTGCTGCAGGTCACCTTCGAAAACGCCGCGCATTTCGTGGGAAA
TCGCGCCCTCGGGCAGGGGTCTCAGGGCCAGGAAGCATATTCGTGCGGGG
GGGGGGTGTCCGTCGGCGGCACCGGCAGAGTAGAGTTTTTGGAATTGGCG
AGCTTTGACGAAAATTCGGCGTGGAGAGGAGGCGCTCTGTGCAACCGCGG
GTGGGCAAAATTCTTTCGAAGAAGCTTCTTCAATGGCAACCGAGCGTCTG
GAGGTGCATTTGCGGGTGACTATTTTTCGGTGCCGCGCTTGCCGACCTGA
ACGTTACTGTTTGTTGGTAGTGTTGTTGTGTTTCTTGTGCCCAAATGTTT
TCAAGTGAAACAAGCTTTCGTTCGAAACGCGGGAACGTCAGCCCCCAACA
TTCGAGAGTACCATGTACGAGGTCCAATTTGGCGATGTCGTTGTTGAGGG
AAATAAATCTTTCTAGGCCCTAGTGGCGATGATTTGGAAGGAGGCGAAGC
GGAAGAGAGTTAACAGACTTTTTTCGTGACCACAGCATAAGATTACCAGA
GCGAACAAACACTACCGAACAAACATGCGGAGGAAAAACGGGTAAATGGG
ATGAGCACCGGTCACATTGTTGGTCTACTTTCTTCTAGATGGCCTCTGTG
GCGGCGATCTCGCTTCTCCTCTAATTGTCCCTCGCCCTCCTAATCCCCCC
GCAAGCCCCCTCTCGGATATCGCACTCGCTGAAAACCAAGTTCCACGCTC
AATGCTGTTTTGGTCACGATTTTCCTGCAGGCGCTTCGACACGGGTAGGT
GGGAACGGGGGTGCCGTGTTTACCGAGGAGGGTAGCACCACGATTTTTAC
GAGAAGGTCGACCATGTTCAGGAACTGGGCGGCCGGCAGCGGGGGCTCCG
TGTATAACGCGGGGGTGTCGACCTTCGAAACCTCGGCTACTTTTAGGGGC
AACACGGCGGCAGCGGCGGCAACGACGGAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig6614:1997..7676+ >mRNA_Ecto-sp13_S_contig6614.17466.1 ID=mRNA_Ecto-sp13_S_contig6614.17466.1|Name=mRNA_Ecto-sp13_S_contig6614.17466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6614:1997..7676+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTGCAGGTATGCTTCGCGGTGGCCGTGTGTCCTGGCGCTTGCCATCTC CACCGGAGCTCAGCCTCCCCAGTGCACACGGCCAAGGCGAAGAGCGGCTG GGACGGTGCCCATTTCAGACTGCGCGGGGCTGGACGCGTTGCCGTCGCCG ATAACGGAGGATCTTCACCTCTCCTTTGACGTTGGAGCTATCGTGTGTGA GAAGCTCGTCACGCTAACAGTCGGCGGTGGCACCGAGCTAGCGATCCACG TTAGCCCCGGCAGCACAAGCGAAGGGTTGGGTGGAGGCGAAGACGAAGGG TACAGGGATCCCCCCGTGTCGGGATTGAGGCTCCGCAACGTCCGCATCGT CGTGAAGAGCGGTGCGATGCTCAGCGTCGGGGTGGCCGGCGATATTTCGT CGGACGACATGGGATACGCGGGGCCTGGAGAAGGCACCAGCTCCCTGACG CTAGAGGGCGCGGCGCCACAGGAGTCGAATGGAGGCGCACTGGAGGTGGA GGAGGGGGGCGCGGCTGTGTTTCTAGTGCCGATTCACTTGGAGGGGAACT CGGTCCAGAACGGCTACTCCGGCGGGGCGTTCCACACGGACGGAGAGGTC ACCTTCGAAAACGCCGCGCATTTCGTGGGAAATCGCGCCCTCGGGCAGGG GTCTCAGGGCCAGGAAGCATATTCGTGCGGGGGGGGGGTGTCCGTCGGCG GCACCGGCAGAGTAGAGTTTTTGGAATTGGCGAGCTTTGACGAAAATTCG GCGTGGAGAGGAGGCGCTCTGTGCAACCGCGGGTGGGCAAAATTCTTTCG AAGAAGCTTCTTCAATGGCAACCGAGCGTCTGGAGGCGCTTCGACACGGG TAGGTGGGAACGGGGGTGCCGTGTTTACCGAGGAGGGTAGCACCACGATT TTTACGAGAAGGTCGACCATGTTCAGGAACTGGGCGGCCGGCAGCGGGGG CTCCGTGTATAACGCGGGGGTGTCGACCTTCGAAACCTCGGCTACTTTTA GGGGCAACACGGCGGCAGCGGCGGCAACGACGGAG back to top
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