prot_Ecto-sp13_S_contig6614.17466.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6614.17466.1
Unique Nameprot_Ecto-sp13_S_contig6614.17466.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length345
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6614.17466.1 vs. uniprot
Match: A0A6H5JTS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS8_9PHAE)

HSP 1 Score: 514 bits (1325), Expect = 1.110e-181
Identity = 261/283 (92.23%), Postives = 271/283 (95.76%), Query Frame = 0 
Query:    1 MCRYASRWPCVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGLDALPSPITEDLHLSFDVGAIVCEKLVTLTVGGGTELAIHVSPGSTSEGLGGGE--DEGYRDPPVSGLRLRNVRIVVKSGAMLSVGVAGDISSDDMGYAGPGEGTSSLTLEGAAPQESNGGALEVEEGGAAVFLVPIHLEGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGSQGQEAYSCGGGVSVGGTGRVEFLELASFDENSAWRGGALCNRGWAKFFRRSFFNGNRASGGAS 281
            MCRYASRW CVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGL+ALPS IT+DLHLSFDVGAIVCEKLVTLTVGGG ELAIHVSPGSTSEGLGGGE  DEG RDPPVSGLRLRNVR+ VKSGAMLSVGVAGDISSD MGYAGPGEGTS+LTLEG APQ+SNGGALEVEEGGAAVFLVP+H EGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGS+GQEA+SCGGGVSVGGTGRVEF ELASF+ENSAWRGGALCNRGWAKFFRRSFFNGN+ASGG S
Sbjct:    1 MCRYASRWACVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGLEALPSLITQDLHLSFDVGAIVCEKLVTLTVGGGIELAIHVSPGSTSEGLGGGEGEDEGCRDPPVSGLRLRNVRVGVKSGAMLSVGVAGDISSDGMGYAGPGEGTSALTLEGVAPQDSNGGALEVEEGGAAVFLVPVHFEGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGSRGQEAHSCGGGVSVGGTGRVEFSELASFEENSAWRGGALCNRGWAKFFRRSFFNGNQASGGTS 283
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BLAST of mRNA_Ecto-sp13_S_contig6614.17466.1 vs. uniprot
Match: D7G5R2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R2_ECTSI)

HSP 1 Score: 482 bits (1240), Expect = 1.170e-166
Identity = 252/281 (89.68%), Postives = 262/281 (93.24%), Query Frame = 0 
Query:   67 EKLVTLTVGGGTELAIHVSPGSTSEGLG--GGEDEGYRDPPVSGLRLRNVRIVVKSGAMLSVGVAGDISSDDMGYAGPGEGTSSLTLEGAAPQESNGGALEVEEGGAAVFLVPIHLEGNSVQNGYSGGAFHTDGEVTFENAAHFVGNRALGQGSQGQEAYSCGGGVSVGGTGRVEFLELASFDENSAWRGGALCNRGWAKFFRRSFFNGNRASGGASTRVGGNGGAVFTEEGSTTIFTRRSTMFRNWAAGSGGSVYNAGVSTFETSATFRGNTAAAAATTE 345
            ++LVTLTVGGG ELAIHVSPGS SEG+G     DEGYRDPPVSGLRLRNVR+VVKSGAMLSVGVAGD S DDMGYAGPGEGTS+LTLEGAAPQ SNGGALEVEEGGAAVFLVP+H EGNSVQNGYSGGAFH DGEVTFENAAHFVGNRALGQGS+GQEA+SCGGGVSVGGTGRVEF ELASF+ENSAW GGALCNRGWAKFFRRSFFNGNRASGGASTRVG +GGAVFTEEGSTTIFTRRSTM RNWAAGSGGSVYNAGVSTFETSA FRGNTAAAAA  E
Sbjct:   16 QQLVTLTVGGGIELAIHVSPGSVSEGVGEXXXXDEGYRDPPVSGLRLRNVRVVVKSGAMLSVGVAGDYSLDDMGYAGPGEGTSALTLEGAAPQHSNGGALEVEEGGAAVFLVPVHFEGNSVQNGYSGGAFHADGEVTFENAAHFVGNRALGQGSRGQEAHSCGGGVSVGGTGRVEFSELASFEENSAWTGGALCNRGWAKFFRRSFFNGNRASGGASTRVGADGGAVFTEEGSTTIFTRRSTMLRNWAAGSGGSVYNAGVSTFETSAAFRGNTAAAAARVE 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6614.17466.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTS8_9PHAE1.110e-18192.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R2_ECTSI1.170e-16689.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..345
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.541
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 145..339

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6614contigEcto-sp13_S_contig6614:1997..7676 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6614.17466.1mRNA_Ecto-sp13_S_contig6614.17466.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6614 1997..7676 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6614.17466.1 ID=prot_Ecto-sp13_S_contig6614.17466.1|Name=mRNA_Ecto-sp13_S_contig6614.17466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp
MCRYASRWPCVLALAISTGAQPPQCTRPRRRAAGTVPISDCAGLDALPSP
ITEDLHLSFDVGAIVCEKLVTLTVGGGTELAIHVSPGSTSEGLGGGEDEG
YRDPPVSGLRLRNVRIVVKSGAMLSVGVAGDISSDDMGYAGPGEGTSSLT
LEGAAPQESNGGALEVEEGGAAVFLVPIHLEGNSVQNGYSGGAFHTDGEV
TFENAAHFVGNRALGQGSQGQEAYSCGGGVSVGGTGRVEFLELASFDENS
AWRGGALCNRGWAKFFRRSFFNGNRASGGASTRVGGNGGAVFTEEGSTTI
FTRRSTMFRNWAAGSGGSVYNAGVSTFETSATFRGNTAAAAATTE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence