prot_Ecto-sp13_S_contig6613.17465.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6613.17465.1
Unique Nameprot_Ecto-sp13_S_contig6613.17465.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length450
Homology
BLAST of mRNA_Ecto-sp13_S_contig6613.17465.1 vs. uniprot
Match: D7FRR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRR0_ECTSI)

HSP 1 Score: 697 bits (1800), Expect = 3.830e-245
Identity = 392/408 (96.08%), Postives = 394/408 (96.57%), Query Frame = 0
Query:   43 MRRIARTHWDADGPLDHRENLSPRSQQLDGEYLLPLACVDDSFGDHAGGXXXXXXXXXXXXXXXXXXXXXXXLASGMEAXISAGSPRAGGIGSVGAGVTSPRDRDVYGGGGGRKRGKGDRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLHPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHRTTSLQGRGAAASPSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGESFWVEADGAAPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS 450
            MRRIARTHWDADGPLDHRENLSPRSQQLDGEYLLPLAC DDSFGDH GG  XXXXXXXXXXXXXXXXXXXXXLASGMEA IS GSPRAGGIGSVGAGVTSPRDRDV GGGGGRKRGK DRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFL PRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAH  TS QGRGAAAS SGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGE+FWVEAD A+PARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS
Sbjct:    1 MRRIARTHWDADGPLDHRENLSPRSQQLDGEYLLPLACGDDSFGDHTGGGAXXXXXXXXXXXXXXXXXXXXXLASGMEAGISTGSPRAGGIGSVGAGVTSPRDRDVSGGGGGRKRGKRDRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHPATSPQGRGAAASTSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGENFWVEADRASPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS 408          
BLAST of mRNA_Ecto-sp13_S_contig6613.17465.1 vs. uniprot
Match: A0A482RT25_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT25_9ARCH)

HSP 1 Score: 183 bits (465), Expect = 1.620e-51
Identity = 110/288 (38.19%), Postives = 159/288 (55.21%), Query Frame = 0
Query:  163 RRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLHPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHRTTSLQGRGAAASPSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGESFWVEADGAAPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS 450
            R+F LR+HKF FQ +L LHF +C+LS+  PF  SG+   A +P+ VW FY+ +F++   +A+ V+PGF + K SF + +EEF  P+L+PVLS+SFL V +++ +T   LGGPPLC   C TCL SW     T S+                 S  SP             DS++   +R                                 CGYANGKELLAYYT+SQ++ L++  V+  ++ C+AW+V+EEE+ +R+ AE+ LK ++P A+ELR  +I  HG P S
Sbjct:   27 RKFSLRVHKFSFQWDLVLHFLICLLSLC-PFFFSGNRLFALLPLSVWVFYHVLFILNPNQANLVIPGFGKLKHSFKSTIEEFFSPKLLPVLSISFLLVALSLGVTGHTLGGPPLCYHPCGTCLSSW-----TNSI-----------------SLSSP-------------DSSSINSYRHG-------------------------------CGYANGKELLAYYTMSQTSFLLFCVVVLSMVVCMAWRVAEEEIEEREQAEAWLKRESPLAYELRGEVIGTHGPPAS 247          
BLAST of mRNA_Ecto-sp13_S_contig6613.17465.1 vs. uniprot
Match: A0A7S3M8A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8A9_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.110e-46
Identity = 103/280 (36.79%), Postives = 155/280 (55.36%), Query Frame = 0
Query:  163 RRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLHPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHRTTSLQGRGAAASPSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGESFWVEADGAAPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMI 442
            ++F LR+HKF FQ ELA+H  +CI+S+A PF  +G    + +P+ VW FYN +F++G + ++ V+P F R K SF   +EEF  P+L+PVLS+SFL VV+++ +T  RLGGPPLC   C  CL +WKH     S+    AAA+               I   ++      D                 +++ V                   CGYANGKE+L YYT+ Q++ L+++ V+  +L CLAW+V++EE  +R+ AE  LK    +AFE+R+ +I
Sbjct:   55 KKFSLRVHKFAFQWELAIHLVVCIISLA-PFFFTGRRVFSLLPISVWLFYNVLFLIGPQHSNKVIPRFGRIKNSFKNNIEEFFSPKLLPVLSISFLCVVLSLAVTGHRLGGPPLCYHPCGVCLATWKH-----SIPLSAAAAALVARVDPLMQPLVTPIDSPYDPLVGRMDPLV--------------DAYRV------------------GCGYANGKEMLGYYTMGQTSFLLFIVVVVAILVCLAWRVADEEKTERRTAEEWLKRDALKAFEMRQTLI 296          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6613.17465.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRR0_ECTSI3.830e-24596.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482RT25_9ARCH1.620e-5138.19Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3M8A9_9STRA3.110e-4636.79Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..177
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 389..410
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 411..450
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 270..388
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 196..200
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 221..248
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..195
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 201..220
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 249..269
NoneNo IPR availableTMHMMTMhelixcoord: 244..266
NoneNo IPR availableTMHMMTMhelixcoord: 190..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6613contigEcto-sp13_S_contig6613:2..3169 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6613.17465.1mRNA_Ecto-sp13_S_contig6613.17465.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6613 2..3169 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6613.17465.1 ID=prot_Ecto-sp13_S_contig6613.17465.1|Name=mRNA_Ecto-sp13_S_contig6613.17465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=450bp
MSRTPLLSGVRKRTLTRARGGQGKSGTTASSWCAEQQVFGCDMRRIARTH
WDADGPLDHRENLSPRSQQLDGEYLLPLACVDDSFGDHAGGGAGGGGGAG
AGSAAGGGGGGGSSLASGMEAGISAGSPRAGGIGSVGAGVTSPRDRDVYG
GGGGRKRGKGDRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPW
LAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLHPRLV
PVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHRTTSLQGR
GAAASPSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGG
ESFWVEADGAAPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAV
MTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS
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