mRNA_Ecto-sp13_S_contig6613.17465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6613.17465.1
Unique NamemRNA_Ecto-sp13_S_contig6613.17465.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6613.17465.1 vs. uniprot
Match: D7FRR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRR0_ECTSI)

HSP 1 Score: 697 bits (1800), Expect = 3.830e-245
Identity = 392/408 (96.08%), Postives = 394/408 (96.57%), Query Frame = 1 
Query:  127 MRRIARTHWDADGPLDHRENLSPRSQQLDGEYLLPLACVDDSFGDHAGGXXXXXXXXXXXXXXXXXXXXXXXLASGMEAXISAGSPRAGGIGSVGAGVTSPRDRDVYGGGGGRKRGKGDRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLHPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHRTTSLQGRGAAASPSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGESFWVEADGAAPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS 1350
            MRRIARTHWDADGPLDHRENLSPRSQQLDGEYLLPLAC DDSFGDH GG  XXXXXXXXXXXXXXXXXXXXXLASGMEA IS GSPRAGGIGSVGAGVTSPRDRDV GGGGGRKRGK DRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFL PRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAH  TS QGRGAAAS SGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGE+FWVEAD A+PARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS
Sbjct:    1 MRRIARTHWDADGPLDHRENLSPRSQQLDGEYLLPLACGDDSFGDHTGGGAXXXXXXXXXXXXXXXXXXXXXLASGMEAGISTGSPRAGGIGSVGAGVTSPRDRDVSGGGGGRKRGKRDRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHPATSPQGRGAAASTSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGENFWVEADRASPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS 408
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BLAST of mRNA_Ecto-sp13_S_contig6613.17465.1 vs. uniprot
Match: A0A482RT25_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT25_9ARCH)

HSP 1 Score: 183 bits (465), Expect = 1.620e-51
Identity = 110/288 (38.19%), Postives = 159/288 (55.21%), Query Frame = 1 
Query:  487 RRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLHPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHRTTSLQGRGAAASPSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGESFWVEADGAAPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS 1350
            R+F LR+HKF FQ +L LHF +C+LS+  PF  SG+   A +P+ VW FY+ +F++   +A+ V+PGF + K SF + +EEF  P+L+PVLS+SFL V +++ +T   LGGPPLC   C TCL SW     T S+                 S  SP             DS++   +R                                 CGYANGKELLAYYT+SQ++ L++  V+  ++ C+AW+V+EEE+ +R+ AE+ LK ++P A+ELR  +I  HG P S
Sbjct:   27 RKFSLRVHKFSFQWDLVLHFLICLLSLC-PFFFSGNRLFALLPLSVWVFYHVLFILNPNQANLVIPGFGKLKHSFKSTIEEFFSPKLLPVLSISFLLVALSLGVTGHTLGGPPLCYHPCGTCLSSW-----TNSI-----------------SLSSP-------------DSSSINSYRHG-------------------------------CGYANGKELLAYYTMSQTSFLLFCVVVLSMVVCMAWRVAEEEIEEREQAEAWLKRESPLAYELRGEVIGTHGPPAS 247
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BLAST of mRNA_Ecto-sp13_S_contig6613.17465.1 vs. uniprot
Match: A0A7S3M8A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8A9_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.110e-46
Identity = 103/280 (36.79%), Postives = 155/280 (55.36%), Query Frame = 1 
Query:  487 RRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLHPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHRTTSLQGRGAAASPSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGGESFWVEADGAAPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAVMTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMI 1326
            ++F LR+HKF FQ ELA+H  +CI+S+A PF  +G    + +P+ VW FYN +F++G + ++ V+P F R K SF   +EEF  P+L+PVLS+SFL VV+++ +T  RLGGPPLC   C  CL +WKH     S+    AAA+               I   ++      D                 +++ V                   CGYANGKE+L YYT+ Q++ L+++ V+  +L CLAW+V++EE  +R+ AE  LK    +AFE+R+ +I
Sbjct:   55 KKFSLRVHKFAFQWELAIHLVVCIISLA-PFFFTGRRVFSLLPISVWLFYNVLFLIGPQHSNKVIPRFGRIKNSFKNNIEEFFSPKLLPVLSISFLCVVLSLAVTGHRLGGPPLCYHPCGVCLATWKH-----SIPLSAAAAALVARVDPLMQPLVTPIDSPYDPLVGRMDPLV--------------DAYRV------------------GCGYANGKEMLGYYTMGQTSFLLFIVVVVAILVCLAWRVADEEKTERRTAEEWLKRDALKAFEMRQTLI 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6613.17465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRR0_ECTSI3.830e-24596.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482RT25_9ARCH1.620e-5138.19Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3M8A9_9STRA3.110e-4636.79Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6613contigEcto-sp13_S_contig6613:2..3169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1350
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003500.1
Cds size1350
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463911.191891-CDS-Ecto-sp13_S_contig6613:1..2081681463911.191891-CDS-Ecto-sp13_S_contig6613:1..208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6613 2..208 -
1681463911.2018108-CDS-Ecto-sp13_S_contig6613:672..17481681463911.2018108-CDS-Ecto-sp13_S_contig6613:672..1748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6613 673..1748 -
1681463911.2115076-CDS-Ecto-sp13_S_contig6613:3102..31691681463911.2115076-CDS-Ecto-sp13_S_contig6613:3102..3169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6613 3103..3169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6613.17465.1prot_Ecto-sp13_S_contig6613.17465.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6613 2..3169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6613.17465.1

>prot_Ecto-sp13_S_contig6613.17465.1 ID=prot_Ecto-sp13_S_contig6613.17465.1|Name=mRNA_Ecto-sp13_S_contig6613.17465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=450bp
MSRTPLLSGVRKRTLTRARGGQGKSGTTASSWCAEQQVFGCDMRRIARTH
WDADGPLDHRENLSPRSQQLDGEYLLPLACVDDSFGDHAGGGAGGGGGAG
AGSAAGGGGGGGSSLASGMEAGISAGSPRAGGIGSVGAGVTSPRDRDVYG
GGGGRKRGKGDRRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPW
LAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLHPRLV
PVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAHRTTSLQGR
GAAASPSGEASRSRSKFSPNIVGAFEGAKRGRDSAAAGDHRQAGGSGGGG
ESFWVEADGAAPARGSQRAKSGEACGYANGKELLAYYTVSQSAILIYLAV
MTGLLTCLAWKVSEEELAQRQAAESRLKGQNPRAFELRERMILEHGRPGS
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mRNA from alignment at Ecto-sp13_S_contig6613:2..3169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6613.17465.1 ID=mRNA_Ecto-sp13_S_contig6613.17465.1|Name=mRNA_Ecto-sp13_S_contig6613.17465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6613:2..3169- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAGGACACCCCTGTTGTCTGGCGTGAGGAAGCGTACTCTAACAAG
AGCAAGAGGCGGCCAAGGTGGGAGAGCTTATGAGGGCTGTCACGTAGTTT
GTGTTTGGGTGGTTGTCTCGCTCAGAGCAGTGCGCAAGTGGACAAGCCGA
TGCAAGGTTTTCACCAGCTCTCAGGGAGACAATGGCACACGCCAGACGCG
CGATCTTCCTGTCTTTGCGCAGCAGTAGCAACCAACGCTGTTGCATGAGC
ACAAACTTCTTGCGATGATACGAGGTTGTTTTGCACATGCCTACCAGACA
GCAAGGTCGAGGTCTCCCGAGAGACGTATGGAAAATGTCAATGCTCTTCC
TTATAGACTGCTGTGCATGGTCGGCGAATCCAACCTTCACTATACCCCTG
TGACCTTGTGGAAAGACTCGGATACGTACCATGTAACCTCCGTTGTTGCG
GGTAGGCCGTGATCTCCACCCGCTGTTTTCCTTCTGACTCCCCCTAGTAG
TAGGTCGATTCTGGACGGTAGCATTGTGTTCATCCACGGAATAACTGCTG
TTGTAGAATAGTCCCAATATCTCCTACCAGCAGGGGCAAATAAGCGGTGG
GTTTTGACTCTCCGTTTCAGTTACTATTCCCCACGAAGCCTGCCAGTCCT
TGCCTGCATCCTCGCTAAGCGTGGCTGTTTATCAGATGGATCGAGGGGAT
GTTCATGACTCACTATCAGTGGGATGTTACGCAGCAGTCAGACTTGCCCG
GGTGCTGTAGCGGGGAAAAAAATGAAAATGGCTTTCTGTAATTTGCCGCC
GCCCGCCACCCACAACATGTTCCACCTTGTACGACAGCAACATCGGTTTC
CTCAGGCCCAAGCGCCAACCCGTCTCCCTCTCTCGCTTCCTCTTTTCCTT
ACCTTGTGCATATGCAACGCACATCCTAATTGCAGCCAATGTTCAGTTCA
GGAACAGCGCTCGCGCGCGATGACGAGTGCTGCTCGGCAACGTTTCTATT
CCGTACGCAGGGAAATCACTTGTTGTTTCTACGCCAACTGGGGCAACAAC
CCGCACAATGGGACACCAATGTCATCATTAATAACGATGATGACCATGTC
ATCATTCATACCGATGATGGCAAAGGCGCCGGCGAACTTCAACTCGGGGC
TTCAATGATCTGATATTTTTTACCGCTACAACGTACGGCAGACTACTGAT
GGTAGCAAACCACGTCAACTTCTCCAAGTCGATATGCACAGGAACCACGC
ACACAAATATCCAATGCGACGGTGGTTATCCCGTGTAGAGACACTTGCCA
GGTGAACTGCTGTGCTAACCTCAGTGCATCTCGGGATTGACTGCAACTTG
GATGTGCTTTGCGGGTCGTCGAACCTCCCTCTTTGCTATTGCCAACTCCC
TGAACCTCTCGAACCTCAAAGGCAAGAGCGGCACCACTGCAAGCAGCTGG
TGCGCGGAACAGCAGGTCTTCGGCTGCGACATGAGGCGCATCGCGCGAAC
ACACTGGGACGCAGACGGACCCCTAGACCACCGCGAAAACTTGTCTCCCC
GTTCGCAGCAGCTCGATGGCGAATATCTCCTGCCGCTCGCTTGCGTCGAC
GATTCGTTCGGGGACCACGCGGGCGGCGGAGCCGGCGGGGGGGGCGGCGC
CGGCGCTGGGAGTGCTGCCGGTGGCGGCGGTGGGGGTGGAAGCTCGCTAG
CGAGCGGGATGGAGGCAGGGATCTCTGCGGGATCTCCAAGGGCGGGTGGG
ATCGGGAGTGTCGGGGCAGGGGTTACCTCGCCTCGAGATCGAGACGTCTA
CGGCGGCGGCGGTGGGCGGAAGAGGGGCAAGGGGGACAGGAGGCGCTTCT
TCCTGAGAATACACAAGTTCGTGTTCCAGAAGGAGCTGGCCCTGCACTTC
TCGATGTGCATCCTGAGCATCGCAATCCCGTTCTCCCTTTCGGGGTCCCC
CTGGCTGGCGGCCATCCCCGTGTGCGTGTGGTGCTTCTACAACGCCATGT
TCGTGATGGGCGCCAAGCGGGCCTCCACGGTCCTGCCGGGCTTCGACCGC
TTCAAGCGGAGCTTCGTGGCCGCGATGGAGGAGTTCCTCCACCCGCGGCT
CGTCCCCGTCCTCTCCCTCTCCTTCCTGAGCGTCGTCATCGCGGTGACGC
TCACGGCGGCGAGGCTCGGCGGACCCCCGCTCTGCATCTCGTCGTGCCGC
ACCTGCCTGGGGAGCTGGAAGCACGCTCACCGCACGACGTCGCTGCAAGG
TCGCGGCGCCGCTGCTTCGCCGTCGGGCGAGGCATCACGCTCCCGCTCCA
AGTTCTCGCCGAATATCGTCGGTGCGTTCGAGGGGGCGAAGAGAGGCAGA
GATAGCGCGGCAGCGGGAGACCACCGGCAGGCCGGGGGGTCGGGGGGCGG
CGGAGAGAGCTTCTGGGTTGAGGCAGATGGAGCGGCACCCGCGCGTGGTT
CGCAGCGGGCGAAGAGCGGGGAAGCGTGCGGCTACGCGAATGGGAAGGTA
AAGAAACGGATGGGTGGTGTTTGGGCAGGCGTTCGATAAGGACAAGACGC
TGTCTTGTGCGACGCGTTGCGGCTGTCCGCGCTCTTTACGTGAGGGATTT
TACTGCACTTTGCTGTGCAACGGTTTGCTTGGTTGGATATTTCACCCTGA
CGGGGCTTTCTATGGTGGGATGTGACTGCGATAGACCGTGTCATTAACCT
CGGCATGTACTGCTGTTCGCGCATCTTTGATGGGATGCTGGTTACGTTTA
GGTTTGATGTCGTGCGTGGTTGGTTCTTGTTAGGGCCGCCAACGCTGATC
GCCCGAGGCGATCCAAAATGTTTGTGAATTGCTACAGGACATGGTTTCGA
AGTTTTTGCCTATGTAACCCCTTGCGTGACAAACAATTATGCGAACCACG
CCCCGCCTGCTGCCTGCACAACGCGTACGTTTCCCTCCCTGCGGCCGGCC
GCCCACGCAAGGAGCTACTAGCGTACTACACCGTGAGCCAGAGTGCGATC
CTCATCTATCTCGCGGTGATGACGGGGCTTCTCACGTGCCTCGCCTGGAA
GGTCTCGGAAGAAGAGCTGGCGCAGAGGCAGGCGGCGGAGAGCAGACTCA
AGGGGCAAAACCCTCGGGCGTTCGAGCTCAGGGAGCGAATGATCCTGGAG
CACGGGCGGCCTGGTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6613:2..3169-

>mRNA_Ecto-sp13_S_contig6613.17465.1 ID=mRNA_Ecto-sp13_S_contig6613.17465.1|Name=mRNA_Ecto-sp13_S_contig6613.17465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6613:2..3169- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAGGACACCCCTGTTGTCTGGCGTGAGGAAGCGTACTCTAACAAG
AGCAAGAGGCGGCCAAGGCAAGAGCGGCACCACTGCAAGCAGCTGGTGCG
CGGAACAGCAGGTCTTCGGCTGCGACATGAGGCGCATCGCGCGAACACAC
TGGGACGCAGACGGACCCCTAGACCACCGCGAAAACTTGTCTCCCCGTTC
GCAGCAGCTCGATGGCGAATATCTCCTGCCGCTCGCTTGCGTCGACGATT
CGTTCGGGGACCACGCGGGCGGCGGAGCCGGCGGGGGGGGCGGCGCCGGC
GCTGGGAGTGCTGCCGGTGGCGGCGGTGGGGGTGGAAGCTCGCTAGCGAG
CGGGATGGAGGCAGGGATCTCTGCGGGATCTCCAAGGGCGGGTGGGATCG
GGAGTGTCGGGGCAGGGGTTACCTCGCCTCGAGATCGAGACGTCTACGGC
GGCGGCGGTGGGCGGAAGAGGGGCAAGGGGGACAGGAGGCGCTTCTTCCT
GAGAATACACAAGTTCGTGTTCCAGAAGGAGCTGGCCCTGCACTTCTCGA
TGTGCATCCTGAGCATCGCAATCCCGTTCTCCCTTTCGGGGTCCCCCTGG
CTGGCGGCCATCCCCGTGTGCGTGTGGTGCTTCTACAACGCCATGTTCGT
GATGGGCGCCAAGCGGGCCTCCACGGTCCTGCCGGGCTTCGACCGCTTCA
AGCGGAGCTTCGTGGCCGCGATGGAGGAGTTCCTCCACCCGCGGCTCGTC
CCCGTCCTCTCCCTCTCCTTCCTGAGCGTCGTCATCGCGGTGACGCTCAC
GGCGGCGAGGCTCGGCGGACCCCCGCTCTGCATCTCGTCGTGCCGCACCT
GCCTGGGGAGCTGGAAGCACGCTCACCGCACGACGTCGCTGCAAGGTCGC
GGCGCCGCTGCTTCGCCGTCGGGCGAGGCATCACGCTCCCGCTCCAAGTT
CTCGCCGAATATCGTCGGTGCGTTCGAGGGGGCGAAGAGAGGCAGAGATA
GCGCGGCAGCGGGAGACCACCGGCAGGCCGGGGGGTCGGGGGGCGGCGGA
GAGAGCTTCTGGGTTGAGGCAGATGGAGCGGCACCCGCGCGTGGTTCGCA
GCGGGCGAAGAGCGGGGAAGCGTGCGGCTACGCGAATGGGAAGGAGCTAC
TAGCGTACTACACCGTGAGCCAGAGTGCGATCCTCATCTATCTCGCGGTG
ATGACGGGGCTTCTCACGTGCCTCGCCTGGAAGGTCTCGGAAGAAGAGCT
GGCGCAGAGGCAGGCGGCGGAGAGCAGACTCAAGGGGCAAAACCCTCGGG
CGTTCGAGCTCAGGGAGCGAATGATCCTGGAGCACGGGCGGCCTGGTTCC
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