mRNA_Ecto-sp13_S_contig65967.17438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65967.17438.1
Unique NamemRNA_Ecto-sp13_S_contig65967.17438.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65967.17438.1 vs. uniprot
Match: D8LQD6_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD6_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.160e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   28 MLDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGV 144
            MLDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGV
Sbjct:  218 MLDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGV 256
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BLAST of mRNA_Ecto-sp13_S_contig65967.17438.1 vs. uniprot
Match: A0A6H5KU08_9PHAE (HIT-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU08_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.000e-17
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   25 GMLDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGV 144
            G+L LLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGV
Sbjct:  380 GILGLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGV 419
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BLAST of mRNA_Ecto-sp13_S_contig65967.17438.1 vs. uniprot
Match: A0A067CML1_SAPPC (HIT-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CML1_SAPPC)

HSP 1 Score: 53.5 bits (127), Expect = 5.540e-7
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 LVDNGDDDGM-LDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQA 135
            LV+  + D + LD LT +E+ +F REVA GRLGKLI  W PWWT +
Sbjct:  135 LVELMESDALTLDALTPDERAQFLREVADGRLGKLIALWTPWWTSS 180
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BLAST of mRNA_Ecto-sp13_S_contig65967.17438.1 vs. uniprot
Match: T0Q3L4_SAPDV (HIT-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q3L4_SAPDV)

HSP 1 Score: 52.4 bits (124), Expect = 1.420e-6
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 LVDNGDDDGM-LDLLTEEEKGRFFREVASGRLGKLIVPWVPWWT 129
            LV+  + D + LD LT  E+ +F REVA GRLGKLI  W PWWT
Sbjct:  135 LVELMESDALSLDALTPNERAQFLREVADGRLGKLIALWTPWWT 178
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BLAST of mRNA_Ecto-sp13_S_contig65967.17438.1 vs. uniprot
Match: A0A0P1B0H6_PLAHL (Predicted Zn-finger protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0H6_PLAHL)

HSP 1 Score: 51.2 bits (121), Expect = 3.640e-6
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   34 DLLTEEEKGRFFREVASGRLGKLIVPWVPWW 126
            D LTEEEK +F REVA GRLGKL+  W PWW
Sbjct:  151 DSLTEEEKRKFLREVADGRLGKLVELWSPWW 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65967.17438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQD6_ECTSI4.160e-18100.00HIT-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KU08_9PHAE2.000e-1795.00HIT-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A067CML1_SAPPC5.540e-754.35HIT-type domain-containing protein n=1 Tax=Saprole... [more]
T0Q3L4_SAPDV1.420e-656.82HIT-type domain-containing protein n=1 Tax=Saprole... [more]
A0A0P1B0H6_PLAHL3.640e-670.97Predicted Zn-finger protein n=1 Tax=Plasmopara hal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65967contigEcto-sp13_S_contig65967:260..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score85.5
Seed ortholog evalue6e-15
Seed eggNOG ortholog2880.D8LQD6
Preferred nameZNHIT2
Model size144
KEGG rclassRC00002,RC00078
KEGG koko:K00888,ko:K02888,ko:K12874
KEGG ReactionR03361
KEGG Pathwayko00562,ko01100,ko03010,ko03040,ko04011,ko04070,map00562,map01100,map03010,map03040,map04011,map04070
KEGG ModuleM00130,M00178,M00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0048731,GO:0048856,GO:0048869
Exons1
EggNOG free text desc.zinc finger
EggNOG OGsKOG4317@1,KOG4317@2759
EC2.7.1.67
Cds size117
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03041,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463908.7399337-UTR-Ecto-sp13_S_contig65967:259..2861681463908.7399337-UTR-Ecto-sp13_S_contig65967:259..286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig65967 260..286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463908.762664-CDS-Ecto-sp13_S_contig65967:286..4031681463908.762664-CDS-Ecto-sp13_S_contig65967:286..403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65967 287..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65967.17438.1prot_Ecto-sp13_S_contig65967.17438.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65967 287..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65967.17438.1

>prot_Ecto-sp13_S_contig65967.17438.1 ID=prot_Ecto-sp13_S_contig65967.17438.1|Name=mRNA_Ecto-sp13_S_contig65967.17438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MLDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGV
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mRNA from alignment at Ecto-sp13_S_contig65967:260..403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65967.17438.1 ID=mRNA_Ecto-sp13_S_contig65967.17438.1|Name=mRNA_Ecto-sp13_S_contig65967.17438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65967:260..403+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGTCGACAACGGCGACGATGACGGGATGCTAGACCTGCTGACAGAGGA
GGAGAAGGGGAGGTTCTTCAGGGAGGTGGCCAGCGGGAGGCTGGGGAAGC
TGATCGTCCCGTGGGTGCCCTGGTGGACCCAGGCGGCCGGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65967:260..403+

>mRNA_Ecto-sp13_S_contig65967.17438.1 ID=mRNA_Ecto-sp13_S_contig65967.17438.1|Name=mRNA_Ecto-sp13_S_contig65967.17438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65967:260..403+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTAGACCTGCTGACAGAGGAGGAGAAGGGGAGGTTCTTCAGGGAGGT
GGCCAGCGGGAGGCTGGGGAAGCTGATCGTCCCGTGGGTGCCCTGGTGGA
CCCAGGCGGCCGGGGTG
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