prot_Ecto-sp13_S_contig6586.17421.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6586.17421.1
Unique Nameprot_Ecto-sp13_S_contig6586.17421.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length105
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6586.17421.1 vs. uniprot
Match: A0A6H5KKJ2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.180e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 
Query:    3 AGGAGKEVAGVVRWSAEERATVLGLLCDEVSATGVAVDHMKV 44
            AGGAGKEVAGVVRWSAEERATVLGLLCDEVSATGVAVDHMKV
Sbjct:  558 AGGAGKEVAGVVRWSAEERATVLGLLCDEVSATGVAVDHMKV 599
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BLAST of mRNA_Ecto-sp13_S_contig6586.17421.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.100e-13
Identity = 46/62 (74.19%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:   44 VLVEKETASARERAAVENGGGGDXXXXXXXXXXXXXXXXXPQFEAPGDDEAPVRESALVPAG 105
            VLV KETASARERAAVE GGGGDXX        XX     PQFEAPGDDEAPVRE ALVPAG
Sbjct: 1340 VLVVKETASARERAAVEIGGGGDXXSESGDLDGXXSDGEEPQFEAPGDDEAPVRELALVPAG 1401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6586.17421.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKJ2_9PHAE5.180e-16100.00Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LBK0_ECTSI1.100e-1374.19Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6586contigEcto-sp13_S_contig6586:530..1673 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6586.17421.1mRNA_Ecto-sp13_S_contig6586.17421.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6586 528..1673 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6586.17421.1 ID=prot_Ecto-sp13_S_contig6586.17421.1|Name=mRNA_Ecto-sp13_S_contig6586.17421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
VGAGGAGKEVAGVVRWSAEERATVLGLLCDEVSATGVAVDHMKVLVEKET
ASARERAAVENGGGGDGGSESGDLDGDDSDGDEPQFEAPGDDEAPVRESA
LVPAG
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