mRNA_Ecto-sp13_S_contig6586.17421.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6586.17421.1
Unique NamemRNA_Ecto-sp13_S_contig6586.17421.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6586.17421.1 vs. uniprot
Match: A0A6H5KKJ2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.180e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    7 AGGAGKEVAGVVRWSAEERATVLGLLCDEVSATGVAVDHMKV 132
            AGGAGKEVAGVVRWSAEERATVLGLLCDEVSATGVAVDHMKV
Sbjct:  558 AGGAGKEVAGVVRWSAEERATVLGLLCDEVSATGVAVDHMKV 599
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BLAST of mRNA_Ecto-sp13_S_contig6586.17421.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.100e-13
Identity = 46/62 (74.19%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  130 VLVEKETASARERAAVENGGGGDXXXXXXXXXXXXXXXXXPQFEAPGDDEAPVRESALVPAG 315
            VLV KETASARERAAVE GGGGDXX        XX     PQFEAPGDDEAPVRE ALVPAG
Sbjct: 1340 VLVVKETASARERAAVEIGGGGDXXSESGDLDGXXSDGEEPQFEAPGDDEAPVRELALVPAG 1401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6586.17421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKJ2_9PHAE5.180e-16100.00Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LBK0_ECTSI1.100e-1374.19Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6586contigEcto-sp13_S_contig6586:528..1673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score74.3
Seed ortholog evalue3.7e-11
Seed eggNOG ortholog2880.D8LBK0
Model size317
KEGG koko:K10608,ko:K11658,ko:K11756,ko:K12035
KEGG Pathwayko04120,ko05206,map04120,map05206
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5076@1,KOG1245@2759,KOG1474@2759,KOG2177@1,KOG2177@2759
EC2.3.2.27
Cds size315
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463907.2501485-CDS-Ecto-sp13_S_contig6586:529..7151681463907.2501485-CDS-Ecto-sp13_S_contig6586:529..715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6586 530..715 -
1681463907.2707393-CDS-Ecto-sp13_S_contig6586:1544..16731681463907.2707393-CDS-Ecto-sp13_S_contig6586:1544..1673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6586 1545..1673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6586.17421.1prot_Ecto-sp13_S_contig6586.17421.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6586 530..1673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6586.17421.1

>prot_Ecto-sp13_S_contig6586.17421.1 ID=prot_Ecto-sp13_S_contig6586.17421.1|Name=mRNA_Ecto-sp13_S_contig6586.17421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
VGAGGAGKEVAGVVRWSAEERATVLGLLCDEVSATGVAVDHMKVLVEKET
ASARERAAVENGGGGDGGSESGDLDGDDSDGDEPQFEAPGDDEAPVRESA
LVPAG
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mRNA from alignment at Ecto-sp13_S_contig6586:528..1673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6586.17421.1 ID=mRNA_Ecto-sp13_S_contig6586.17421.1|Name=mRNA_Ecto-sp13_S_contig6586.17421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6586:528..1673- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGGGCCGGCGGGGCGGGGAAGGAGGTGGCCGGGGTCGTGAGGTGGTC
AGCGGAGGAGCGGGCGACGGTGCTCGGGCTGCTGTGCGACGAGGTCTCGG
CCACGGGAGTCGCTGTCGACCACATGAAGGTAGGGGGCGGGGGCGGGCGG
AGGGAACGCGAACTGTAGGTAGCCTGCTTGCTTTTGTGGATGCGTAGATA
AGAATTTGGGCTTGGGGGGTTACACAAAGTACACAAGTTGCTGCCCGTTT
GCGTATAACGTTGGTGAGGTTCTGCCAAGCACGACTACGATGGCATCCAC
TAGCTGTCATCCTGCGGCGAAGACCAACGGAGTCGGCCTGTCTAGTTTGG
CCGTTGAATCCGTAGTCCCAAAGTGAAATAGTTGGCACAGACCTCGGCGG
GTTTGTTAAACTCACAGGCGTCGTGTCGCGCACGTTAGGTTGTTTTGTCC
GTGCTCGAAGACGGAGCGGAGCGTCCACCTCACGCGAACCTTACGTTTTG
CCGCAATGGTGAATGTTCTTTATGTATCACCGCTTGGAAGACCTTGATCT
TGTAACCCACCTGCGCTGGGCACACTCAAGGATCTGTGCGGAAGCACCCT
CTTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTGCCTCTCTCTCTGTCTCT
CCGTGTGTCGCGTATATGTATCTCGGCGTGTTTCTCCCTCTCACACACAT
TGTCTGTGTGTCATCCCCTCGTGGTGGTTCTTCCCTCTGACCTGACCTGA
CCTCGTCAACAGTTTTCCGTCACTCTCCACGTCACACGCGCAGCACTCAA
TCTGTTTTTGTTTCCCTTCTTGGCCAGTCTCTAGTTTTCTCACTCCCTCA
CCCGGCTCCTGGCAACCCCCCCCCCCACCCACCCCCGGGTGGTAAATGAT
CTTAACCCGCTAAGGCATGCAAAATATGAGTACGCCCCGCCTCCCCCCCC
ACCGGCAGGTGCTCGTGGAGAAAGAAACCGCAAGCGCCAGAGAGAGGGCT
GCCGTGGAGAACGGTGGCGGCGGCGACGGCGGCAGCGAGTCTGGGGATTT
GGACGGGGACGACTCGGACGGCGACGAGCCGCAGTTCGAGGCACCGGGAG
ACGACGAAGCGCCCGTCCGGGAATCAGCGCTTGTCCCCGCAGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6586:528..1673-

>mRNA_Ecto-sp13_S_contig6586.17421.1 ID=mRNA_Ecto-sp13_S_contig6586.17421.1|Name=mRNA_Ecto-sp13_S_contig6586.17421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6586:528..1673- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGGGCCGGCGGGGCGGGGAAGGAGGTGGCCGGGGTCGTGAGGTGGTC
AGCGGAGGAGCGGGCGACGGTGCTCGGGCTGCTGTGCGACGAGGTCTCGG
CCACGGGAGTCGCTGTCGACCACATGAAGGTGCTCGTGGAGAAAGAAACC
GCAAGCGCCAGAGAGAGGGCTGCCGTGGAGAACGGTGGCGGCGGCGACGG
CGGCAGCGAGTCTGGGGATTTGGACGGGGACGACTCGGACGGCGACGAGC
CGCAGTTCGAGGCACCGGGAGACGACGAAGCGCCCGTCCGGGAATCAGCG
CTTGTCCCCGCAGGT
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