mRNA_Ecto-sp13_S_contig6585.17417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig6585.17417.1
Unique Name	mRNA_Ecto-sp13_S_contig6585.17417.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6585.17417.1 vs. uniprot
Match: D7FVY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY4_ECTSI)

HSP 1 Score: 550 bits (1418), Expect = 2.720e-195
Identity = 319/352 (90.62%), Postives = 334/352 (94.89%), Query Frame = 1

Query:    1 MPPSVGDASVKGVAGLSCDGTGTHAGKVASALLAKHVRTLEVLHSLQKSNAQLRQDIQDKSGEEEVQRRIAEAVATAVAAPNDLSEELQAQGEKLRGRVAGLEQELISAKQTAEKILDNANSQMESLRKINVTLQQKCKDLEFEAASHERQISQQGEVEAHLRETSVALALAEGRASDLARTLADQESTSNTLQLRLKENDDKICAMKEAETILTAEVDESKTQLARLNGQARDLQEKLRVAGAEQGQLGVRLEQALRDLANSREEKKELVKKEQESLARAAEQKSRVNAAEAKLSEERKRFQRFREDAKRKIEEEARRHKAAFMEHAYERDQLLVRIDALSREVESMRAHM 1056
            MPPSVGD SVKGVAGLS  GT T+ GKVASALLAKHVRTLEVLHSLQKSNAQLRQDIQDKSGEEEVQRRIAEA+A AVAAPNDLSEELQAQGEKLR RVAGLEQELISAKQTAEK LDNANSQMESLRK+NVTLQ+KC+DLEFEAASHERQISQQGEVE+HLRETSVAL+LAEGRASDLAR LADQESTS+TLQLRLKENDDKI AMKEAETILTAEVDESKTQLARL+GQARDLQEKLRVA AE GQLGVRLEQALRDLA SREE KE+V+KEQESLA AAEQKSRVNAAEAKLSEERKRFQRFREDAKRK+EEEARR+KAA MEHAYER++LLVRIDAL RE ESMRAHM
Sbjct:    1 MPPSVGDTSVKGVAGLSYGGTATNVGKVASALLAKHVRTLEVLHSLQKSNAQLRQDIQDKSGEEEVQRRIAEAIAAAVAAPNDLSEELQAQGEKLRERVAGLEQELISAKQTAEKSLDNANSQMESLRKMNVTLQKKCEDLEFEAASHERQISQQGEVESHLRETSVALSLAEGRASDLARRLADQESTSSTLQLRLKENDDKIFAMKEAETILTAEVDESKTQLARLDGQARDLQEKLRVAEAEHGQLGVRLEQALRDLATSREENKEMVEKEQESLAGAAEQKSRVNAAEAKLSEERKRFQRFREDAKRKLEEEARRYKAALMEHAYERERLLVRIDALLREAESMRAHM 352

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6585.17417.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6585.17417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FVY4_ECTSI	2.720e-195	90.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6585	contig	Ecto-sp13_S_contig6585:500..3798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	1056
Hectar predicted targeting category	other localisation
Exons	7
Cds size	1056

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6585.17417.1	prot_Ecto-sp13_S_contig6585.17417.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig6585 500..3798 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463906.9793801-CDS-Ecto-sp13_S_contig6585:499..604	1681463906.9793801-CDS-Ecto-sp13_S_contig6585:499..604	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6585 500..604 -
1681463906.9932976-CDS-Ecto-sp13_S_contig6585:886..1012	1681463906.9932976-CDS-Ecto-sp13_S_contig6585:886..1012	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6585 887..1012 -
1681463907.0059605-CDS-Ecto-sp13_S_contig6585:1330..1561	1681463907.0059605-CDS-Ecto-sp13_S_contig6585:1330..1561	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6585 1331..1561 -
1681463907.0170908-CDS-Ecto-sp13_S_contig6585:2128..2323	1681463907.0170908-CDS-Ecto-sp13_S_contig6585:2128..2323	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6585 2129..2323 -
1681463907.029391-CDS-Ecto-sp13_S_contig6585:2501..2639	1681463907.029391-CDS-Ecto-sp13_S_contig6585:2501..2639	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6585 2502..2639 -
1681463907.0461533-CDS-Ecto-sp13_S_contig6585:3286..3373	1681463907.0461533-CDS-Ecto-sp13_S_contig6585:3286..3373	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6585 3287..3373 -
1681463907.062097-CDS-Ecto-sp13_S_contig6585:3624..3798	1681463907.062097-CDS-Ecto-sp13_S_contig6585:3624..3798	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6585 3625..3798 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig6585:500..3798-
coding sequence from alignment at Ecto-sp13_S_contig6585:500..3798-

protein sequence of mRNA_Ecto-sp13_S_contig6585.17417.1

>prot_Ecto-sp13_S_contig6585.17417.1 ID=prot_Ecto-sp13_S_contig6585.17417.1|Name=mRNA_Ecto-sp13_S_contig6585.17417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp
MPPSVGDASVKGVAGLSCDGTGTHAGKVASALLAKHVRTLEVLHSLQKSN
AQLRQDIQDKSGEEEVQRRIAEAVATAVAAPNDLSEELQAQGEKLRGRVA
GLEQELISAKQTAEKILDNANSQMESLRKINVTLQQKCKDLEFEAASHER
QISQQGEVEAHLRETSVALALAEGRASDLARTLADQESTSNTLQLRLKEN
DDKICAMKEAETILTAEVDESKTQLARLNGQARDLQEKLRVAGAEQGQLG
VRLEQALRDLANSREEKKELVKKEQESLARAAEQKSRVNAAEAKLSEERK
RFQRFREDAKRKIEEEARRHKAAFMEHAYERDQLLVRIDALSREVESMRA
HM

mRNA from alignment at Ecto-sp13_S_contig6585:500..3798-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig6585.17417.1 ID=mRNA_Ecto-sp13_S_contig6585.17417.1|Name=mRNA_Ecto-sp13_S_contig6585.17417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3299bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6585:500..3798- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCATCTGTCGGTGACGCTAGTGTCAAGGGGGTTGCTGGGCTCAG
TTGTGACGGGACAGGCACACATGCCGGCAAGGTCGCGTCTGCTCTCCTTG
CCAAACATGTGCGCACGCTTGAGGTTCTTCATTCGCTTCAAAAGAGCAAC
GCTCAGCTTAGGCAAGACATCCAGGTGTGAGGTCAAACACATCTGACGCT
ACACATTTTACGATGTTTAGTGGTCGATATTAGATTCAATGCCAGATCGA
GCCTCCTCGTCGCTGCTGTACCTGTACACGCTGGTTCTGAGCGAGCAACA
ATCCAACAGACTTTGACATCTTCAGGTTTAAAGTGCAGGCTCCGGAGAAT
CACCTTGTTTCAACAAGCTGCACATGGAAACCCCCAGTAACACGATGCTG
AATACTGTGCTGCAACGAGAAACAGGATAAGTCGGGAGAGGAAGAGGTAC
AACGGAGAATCGCTGAGGCTGTTGCCACAGCCGTTGCCGCGCCGAATGAT
CTTAGTGAAGAGGTGAGTGAAACTGAGATACTGCCGCCGAAAATGTATAC
GTTACTTCACGTCAGTAAGCGGCGCGGTGTTGCATGCCCTCCGACTGCGG
CGTGGCAACAATTTACACACGTGAACAGTAGCTCGCACCACCTGTTGACT
CAATCAATTGCTTCGATAATTGTGCTATCAACAACCATTGATTCGAGGCT
CCTCGACGGGCAGTCGAGAGCAGTACGCAGAGTCAAGGAAGCTCACGTCT
GACTGCCAACTCATTGGTAAGACATTACTACATTAGGCTACAACGCTTCC
CACATCCGGAAAACTGGGATACACGCGGAAGACTCAGCAACCCTGCATTC
GATCAGCGTCACACTGGTCCTCATGTGGTTCGCCGCCAACAGCAAGACTC
TCTGGGCGACCTTGATGGAGGAGACCGACGATGAGGACCACAAATACGGG
CATTGCGAATTGAGCTGTCCGGCGTGTTCCCAAGGGCTTACCGATTAGAC
TTCTCATCAGCGCTGCATGAAGTCGTAATGGATAAGCATTTCCAAACATG
GTGATGGTTTTCATGCCTGGTCCAGAATAGGTGGATTCATCGCGCAATAA
TGAAGCCCTACTTTCGTTAATACGTACGCTGCTGCTCCGTATCGTTGAAC
GGTTGACAGCTTCAGGCACAAGGAGAGAAACTACGCGGACGAGTCGCCGG
GCTAGAGCAGGAGTTGATCTCTGCCAAACAGACTGCCGAAAAAATTCTGG
ATAACGCCAACAGCCAAATGGAGAGCTTGCGGAAGATTAATGTGACGGTG
AGATCAGTCGCGGTTGTCATGTTACGCGCCGCTCTCCCAACTTGAGGATG
CCTATGCCGTGCCATCACTGCACCTCAATCGTAAACCATAGGTAGGCGGA
ACAACATGTACCGTGGAAAAAAGAAAAATGACTGATCAGTATCCATCCAC
ACGCCATACTGTCAATGCCATGCAGCTCCAGCAAAAGTGCAAAGACCTCG
AATTCGAGGCAGCCTCTCACGAGCGGCAAATATCTCAACAAGGCGAGGTG
GAGGCACACCTGCGGGAGACATCTGTGGCGCTGGCGCTGGCAGAAGGAAG
GGCGAGCGACCTCGCCAGAACACTCGCGGATCAGGAGTCGACTTCAAATA
CGCTACAGCTTCGTCTAAAGGTGCAGCGAGATGTTAACCCAAGACACGCA
TGGTGCTCTCCCTGGTTTCTGTACTTTGATTGCGGTCATACATGCCTGAT
GTTCTGCATTTGATGGGGCCGTTCGCTTTATCCTAACCGTGAAAAGATAG
TCTTTCGGGGCAGAATGTTATTTTCTTACAGCGTGAGCGTGTTAGCGAGA
AACACTGTTTTGAGCTGGGCACGAATGTGCCTCAACGACAAAGCATAGGC
CACTCCTATGCATGCTACCACACAAGATGTAGTGTAGCGCCGGCGGCCGG
GCCAAATCTCCTTCGCCTCTGTTCGTACTTGAGAACAAGATGTGAGCTAC
GATTTATCGTAACTGATGTTTCTTTTGGGTGGGGCCGCACCGTAGGTCAT
GATTCCAAAAGCTGCACCACATCGAGATAAGAGACGCTCCATACCAATGT
CTTCTATGAACGAATCACGTGAAACAGCTTTTTGTTCTGGGACATGCGAC
GCCCCGCAATAACCTCGAGTTTCTGGTAAGCAGTTATACCTCCGTTTTCC
CCTCGTTCCCTTTTGCTGCCTCCACCAACATCACAAGGAGAACGATGACA
AAATTTGCGCCATGAAAGAGGCAGAGACAATCCTCACGGCTGAGGTGGAC
GAGAGCAAGACACAGCTCGCACGTCTAAACGGACAGGCGCGCGACTTGCA
GGAGAAGCTCAGGGTGGCCGGAGCTGAGCAGGGGCAGCTCGGAGTACGGC
TCGAACAGGCTTTACGGGACCTCGCAAACTCGAGGGAGGAAAAGAAAGAA
CTGGTGAAGAAGGAGCAGGTCAGACGCAAACAGCTAATCGTGCAAGGAAA
ACGACACATGTCATTTTCTGCTAATCTCTTCCCATTGTTCTCCCGTGGGT
GACTTTTGCTGTTGCCGGGCTGACATATGGTTGCTGTCGAATTTCCTGAA
CGTCAGTCTTCTCCAAGGTCCTCAGAGCTCGTCGCGTGGAATTCCGTGAA
GATACGGTCTATTGAGGTTGAAAGTCGAGGGGGGAGTGTCTGGTGCCGGT
CTTCAAAAAGGCGATGACACTGATGCGCACGGGACATTTAATTCCATTTG
ACAGCCATCGACAAGCTGAGCTCACTTCACGAACAGGAATCGCTTGCGAG
GGCAGCCGAGCAGAAGTCGCGGGTCAACGCTGCGGAGGCGAAGTTATCGG
AAGAAAGGAAGCGCTTCCAGAGATTCCGAGAGGATGCCAAGCGAAAGATT
GAGGAGGAAGCGGTGGGTCCACAAACTGCATGCTCTTGGCAATATGGTCT
GGCGTGGGACACAGCTTCACACCGAGAGAGGCCGAGACGGCCACCTGTAC
AACGCCATCCTTACCGTTTCTACCAAGCCTCGTCACTCTCGCTTGCGTAC
ACATCTAGAGCCGTCGAGAGCAGTCACCATTTCTACGTAGTCGAATCGAC
GAAGAAAGACCCAGATGCCGACGGGTCCATGAATGGTGCAATATTCCAAT
GCTCTGTGTCGGCGCTCGTGGCTTTTTAATCGAATTGTTTTTAGCGGCGG
CATAAAGCGGCTTTCATGGAGCACGCCTACGAGCGAGATCAGCTCCTCGT
GAGGATCGACGCGCTCTCACGTGAGGTCGAGTCGATGCGAGCTCACATG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6585:500..3798-

>mRNA_Ecto-sp13_S_contig6585.17417.1 ID=mRNA_Ecto-sp13_S_contig6585.17417.1|Name=mRNA_Ecto-sp13_S_contig6585.17417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6585:500..3798- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACCATCTGTCGGTGACGCTAGTGTCAAGGGGGTTGCTGGGCTCAG
TTGTGACGGGACAGGCACACATGCCGGCAAGGTCGCGTCTGCTCTCCTTG
CCAAACATGTGCGCACGCTTGAGGTTCTTCATTCGCTTCAAAAGAGCAAC
GCTCAGCTTAGGCAAGACATCCAGGATAAGTCGGGAGAGGAAGAGGTACA
ACGGAGAATCGCTGAGGCTGTTGCCACAGCCGTTGCCGCGCCGAATGATC
TTAGTGAAGAGCTTCAGGCACAAGGAGAGAAACTACGCGGACGAGTCGCC
GGGCTAGAGCAGGAGTTGATCTCTGCCAAACAGACTGCCGAAAAAATTCT
GGATAACGCCAACAGCCAAATGGAGAGCTTGCGGAAGATTAATGTGACGC
TCCAGCAAAAGTGCAAAGACCTCGAATTCGAGGCAGCCTCTCACGAGCGG
CAAATATCTCAACAAGGCGAGGTGGAGGCACACCTGCGGGAGACATCTGT
GGCGCTGGCGCTGGCAGAAGGAAGGGCGAGCGACCTCGCCAGAACACTCG
CGGATCAGGAGTCGACTTCAAATACGCTACAGCTTCGTCTAAAGGAGAAC
GATGACAAAATTTGCGCCATGAAAGAGGCAGAGACAATCCTCACGGCTGA
GGTGGACGAGAGCAAGACACAGCTCGCACGTCTAAACGGACAGGCGCGCG
ACTTGCAGGAGAAGCTCAGGGTGGCCGGAGCTGAGCAGGGGCAGCTCGGA
GTACGGCTCGAACAGGCTTTACGGGACCTCGCAAACTCGAGGGAGGAAAA
GAAAGAACTGGTGAAGAAGGAGCAGGAATCGCTTGCGAGGGCAGCCGAGC
AGAAGTCGCGGGTCAACGCTGCGGAGGCGAAGTTATCGGAAGAAAGGAAG
CGCTTCCAGAGATTCCGAGAGGATGCCAAGCGAAAGATTGAGGAGGAAGC
GCGGCGGCATAAAGCGGCTTTCATGGAGCACGCCTACGAGCGAGATCAGC
TCCTCGTGAGGATCGACGCGCTCTCACGTGAGGTCGAGTCGATGCGAGCT
CACATG