prot_Ecto-sp13_S_contig6531.17342.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6531.17342.1
Unique Nameprot_Ecto-sp13_S_contig6531.17342.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length62
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6531.17342.1 vs. uniprot
Match: A0A6H5L6C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.100e-10
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 0 
Query:    9 QKGEDGNGGGSGCGPSSSTPPGPFLQQRSGGGGC-DVDGGMGFMGNSSCDENLT 61
            Q+GEDGNGG  G  PSS T P P LQQ SG GG  +VD GMGFMGNSS DENLT
Sbjct:   38 QQGEDGNGGRFGWSPSSPTTPAPSLQQGSGRGGVGNVDYGMGFMGNSSGDENLT 91
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BLAST of mRNA_Ecto-sp13_S_contig6531.17342.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.460e-6
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 
Query:   29 PGPFLQQRSGGGGCDVDGGMGFMGNSSCDENLT 61
            PGP LQQRSGGG  DVDGGMG MG +S DE+LT
Sbjct:  158 PGPSLQQRSGGGDGDVDGGMGLMGKTSGDESLT 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6531.17342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6C9_9PHAE1.100e-1070.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHD3_ECTSI6.460e-675.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6531contigEcto-sp13_S_contig6531:6294..6479 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6531.17342.1mRNA_Ecto-sp13_S_contig6531.17342.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6531 5670..7286 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6531.17342.1 ID=prot_Ecto-sp13_S_contig6531.17342.1|Name=mRNA_Ecto-sp13_S_contig6531.17342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MTGTTSPSQKGEDGNGGGSGCGPSSSTPPGPFLQQRSGGGGCDVDGGMGF
MGNSSCDENLT*
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