mRNA_Ecto-sp13_S_contig6531.17342.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6531.17342.1
Unique NamemRNA_Ecto-sp13_S_contig6531.17342.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6531.17342.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-20
Identity = 79/188 (42.02%), Postives = 87/188 (46.28%), Query Frame = 2 
Query:    2 AHLRTFLPPQRTAPALV-------TRAAAVVAVATALVLPRRRRR*LSWMTQTCSTAPRSFWLAGCCVRSLSWSCWTVSSHHRLKLEHPD*TTANQERFVVGRSSGGGNSSSTGATRVRGRRSAXXXXXXXXXXXXXXXXXXXXXXXXXPSSSTPPGPFLQQRSGGGGCDVDGGMGFMGNSSCDENLT 544
            AHL+TFLPP+RT PA+V       TR AAVV   TAL  PR RRR LSWMTQTCS A RSF L+GCCVR LS                       QE        GGG     G+  +                                     PGP LQQRSGGG  DVDGGMG MG +S DE+LT
Sbjct:   68 AHLKTFLPPRRTEPAVVIRAAVAATRTAAVVVALTALAFPRGRRRRLSWMTQTCSVAVRSFPLSGCCVRPLS---------------------GEQEW-------GGG--LQLGSVLL-----------------------------------DTPGPSLQQRSGGGDGDVDGGMGLMGKTSGDESLT 190
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BLAST of mRNA_Ecto-sp13_S_contig6531.17342.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 8.380e-7
Identity = 41/93 (44.09%), Postives = 44/93 (47.31%), Query Frame = 2 
Query:  266 QERFVVGRSSGGGNSSSTGATRVRGRRSAXXXXXXXXXXXXXXXXXXXXXXXXXPSSSTPPGPFLQQRSGGGGCDVDGGMGFMGNSSCDENLT 544
            QE FVV    GG +SSS+GATR+RG RSA                               PG  LQQ SG     VDGGMG MGNSS DE LT
Sbjct:  129 QEHFVVDGRGGGNSSSSSGATRIRGCRSASSAMAGMTSSSQQGEDGNGGGHRLGSVLLDTPGHSLQQGSGXXXXXVDGGMGLMGNSSGDEKLT 221
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BLAST of mRNA_Ecto-sp13_S_contig6531.17342.1 vs. uniprot
Match: A0A6H5L6C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C9_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 4.190e-5
Identity = 29/40 (72.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:  428 PSSSTPPGPFLQQRSGGGGC-DVDGGMGFMGNSSCDENLT 544
            PSS T P P LQQ SG GG  +VD GMGFMGNSS DENLT
Sbjct:   52 PSSPTTPAPSLQQGSGRGGVGNVDYGMGFMGNSSGDENLT 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6531.17342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHD3_ECTSI1.260e-2042.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHD0_ECTSI8.380e-744.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6C9_9PHAE4.190e-572.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6531contigEcto-sp13_S_contig6531:5670..7286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size737
Hectar predicted targeting categoryother localisation
Exons3
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.9073892-UTR-Ecto-sp13_S_contig6531:5669..58641681463900.9073892-UTR-Ecto-sp13_S_contig6531:5669..5864Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6531 5670..5864 +
1681463900.9172823-UTR-Ecto-sp13_S_contig6531:6127..62931681463900.9172823-UTR-Ecto-sp13_S_contig6531:6127..6293Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6531 6128..6293 +
1681463900.9432144-UTR-Ecto-sp13_S_contig6531:6479..64921681463900.9432144-UTR-Ecto-sp13_S_contig6531:6479..6492Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6531 6480..6492 +
1681463900.9523675-UTR-Ecto-sp13_S_contig6531:7109..72861681463900.9523675-UTR-Ecto-sp13_S_contig6531:7109..7286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6531 7110..7286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.9284103-CDS-Ecto-sp13_S_contig6531:6293..64791681463900.9284103-CDS-Ecto-sp13_S_contig6531:6293..6479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6531 6294..6479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6531.17342.1prot_Ecto-sp13_S_contig6531.17342.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6531 6294..6479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6531.17342.1

>prot_Ecto-sp13_S_contig6531.17342.1 ID=prot_Ecto-sp13_S_contig6531.17342.1|Name=mRNA_Ecto-sp13_S_contig6531.17342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MTGTTSPSQKGEDGNGGGSGCGPSSSTPPGPFLQQRSGGGGCDVDGGMGF
MGNSSCDENLT*
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mRNA from alignment at Ecto-sp13_S_contig6531:5670..7286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6531.17342.1 ID=mRNA_Ecto-sp13_S_contig6531.17342.1|Name=mRNA_Ecto-sp13_S_contig6531.17342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6531:5670..7286+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCACCTGAGGACCTTTCTTCCACCGCAGCGGACGGCACCGGCGTTGG
TCACCAGGGCAGCAGCAGTGGTGGCGGTGGCGACGGCCCTGGTGTTACCA
CGACGACGACGACGATGACTCTCCTGGATGACCCAAACCTGCAGTACAGC
ACCCCGGTCGTTTTGGCTGGCGGGGTGCTGCGTCCGATCCCTCAGGTGGG
ATTGGTTGGCTGTGTGTTGGATGTCTTCAAGTGAGGAGATTAGACGATAG
TAGGGTGCAGCTTGCAAGTGACTGCCAAAAGAGGCTTCATGTGTCATGCG
TGTGTTTTACTCGCTTGTTCCACACAATCGCGTATTTACGCGGACCGCCC
GTGTTCGCTTACCCCCTCCGTCCTCCCCCGTCCCCACTTGAGCATCTCCC
CTCCCGCGCGCTCGCTCGTCTTAACGAGAAGTTTTCTGTGCGCACTGTTG
CCAATCAGCTGGTCATGTTGGACCGTTTCGTCACACCATCGACTCAAGCT
CGAACACCCTGACTGAACGACCGCAAATCAGGAACGCTTTGTCGTGGGCC
GGAGCAGCGGCGGCGGCAACAGCAGCAGCACCGGGGCCACGAGAGTCCGC
GGGCGCAGATCAGCGTCGAGCGCGATGACGGGCACGACGTCACCTTCACA
GAAGGGCGAGGACGGGAACGGGGGGGGCTCCGGCTGCGGTCCGTCCTCCT
CCACACCTCCCGGCCCTTTTCTGCAGCAGCGGAGCGGTGGTGGTGGTTGC
GACGTGGACGGCGGCATGGGCTTCATGGGCAACAGCAGCTGCGACGAAAA
CTTGACTTGACCACCAAAAACCCGTAAGTGCGGGCCTCCTTCAAGAGAGC
CATCGTCGAGCTGAACGACACCTGCCACTTTTATTAATAGCTTCTGTCGT
TCATGGTAGGCAAAGCCGGGGTTGCCTTGTTGCTGCTTGCTCCAGTTGCT
GCAAGGTCGACGGCACGTTATACTTGTGGAGGTAGTATAAGTCTCCATGC
CGTGAGAGACCCGCCTCAAATGGCTGGTTGCGGGTTCTTTTCCCCCGCAG
TGGGGGTGTAGTGTTGGTACACCTTTGTCCTACAGGAGCGTGTCCTCAAG
TATGTTCTGTGAGAGCGTTTAGCTTCCCCTGGGTGCGTAAATTAATGACT
TTGTGTTACGGGCCGTTCCATTCAGATTGCCCCGCAAAGTGTTTGGTGGG
GGCGTGATGCTGGGCAGCCTGGGTTGGGAACATGCCTCAGACTGACACGC
TGCAGAGTTGGTCCATCTACATAGCATCTCTTGTGTGCAGCGCTCGTGTC
ACGTTGCAACACACACCAGAGAGTGTCGTTTTTCGTATGTTTGTTTTGCT
GATATGCTGCTGCCTCTGTATTGCGACACAGCAGTGTTCTTCTCTTCTCC
ACCCCCCCCGCCGGGACAACAAAAAACGACATGCTTGCAGACAGAAGCTC
AACTATGGCGCTTTTGTGCGGCTGATGGATCTGCACCGCCGTCGTGCCGA
GGTAGCGGGTATGGCCGGTGCTCCTCCCAGACCGAGACCGAGACCGCCTT
GCTCGGCCGCCAAGATGACCGGAGTCGGTGGTGCTGCCGGGGATCATCTG
AGCGGGAAGGCCGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6531:5670..7286+

>mRNA_Ecto-sp13_S_contig6531.17342.1 ID=mRNA_Ecto-sp13_S_contig6531.17342.1|Name=mRNA_Ecto-sp13_S_contig6531.17342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6531:5670..7286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGGCACGACGTCACCTTCACAGAAGGGCGAGGACGGGAACGGGGG
GGGCTCCGGCTGCGGTCCGTCCTCCTCCACACCTCCCGGCCCTTTTCTGC
AGCAGCGGAGCGGTGGTGGTGGTTGCGACGTGGACGGCGGCATGGGCTTC
ATGGGCAACAGCAGCTGCGACGAAAACTTGACTTGA
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