mRNA_Ecto-sp13_S_contig12030.1735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12030.1735.1
Unique NamemRNA_Ecto-sp13_S_contig12030.1735.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12030.1735.1 vs. uniprot
Match: D8LD73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD73_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.980e-6
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  145 AVVPRQPAELGRSSPTVSAAVAGPPEQHVADAPSAGGAGTP 267
            A + RQPAE GRSSP V+AAVA PPEQ  A+APSAGGAG P
Sbjct:  456 AALGRQPAEPGRSSPAVTAAVAEPPEQQAANAPSAGGAGMP 496
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12030.1735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD73_ECTSI2.980e-673.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12030contigEcto-sp13_S_contig12030:3456..4140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size270
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.912887-CDS-Ecto-sp13_S_contig12030:3457..35661681462638.912887-CDS-Ecto-sp13_S_contig12030:3457..3566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12030 3458..3566 -
1681462638.9223988-CDS-Ecto-sp13_S_contig12030:3961..39971681462638.9223988-CDS-Ecto-sp13_S_contig12030:3961..3997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12030 3962..3997 -
1681462638.9313822-CDS-Ecto-sp13_S_contig12030:4018..41401681462638.9313822-CDS-Ecto-sp13_S_contig12030:4018..4140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12030 4019..4140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12030.1735.1prot_Ecto-sp13_S_contig12030.1735.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12030 3458..4140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12030.1735.1

>prot_Ecto-sp13_S_contig12030.1735.1 ID=prot_Ecto-sp13_S_contig12030.1735.1|Name=mRNA_Ecto-sp13_S_contig12030.1735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
RGGEKSGNPDEIVPGPGGHLPAETHRQEGGGVSNGGGGGGGGDPFSPVAV
VPRQPAELGRSSPTVSAAVAGPPEQHVADAPSAGGAGTP
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mRNA from alignment at Ecto-sp13_S_contig12030:3456..4140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12030.1735.1 ID=mRNA_Ecto-sp13_S_contig12030.1735.1|Name=mRNA_Ecto-sp13_S_contig12030.1735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12030:3456..4140- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGCGGTGAAAAGAGCGGAAACCCCGACGAGATCGTGCCGGGTCCGGG
GGGACACCTTCCCGCCGAAACCCACCGACAAGAAGGCGGCGGAGTCTCGA
ACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGAT
CCCTTCTCGCCGGTCGCGGTAGTACCGCGGTGAGATAGATTTATTGGCCG
GTACCACGTATTGCTGTACGCCACAAGCGGAGAAAAGAGCTTTCGCTGAT
TGGCGGTTGCTGGATCGCTGGCTGATCGCGTCGAGAGGCCTTCTTGCGGC
GACTGAGAACGTGAATGTGCCGCATGAAACATAAGGGGGCGTATTTAGCG
TGCCGGTAGAATTCCGGTGCACGTCGGTGGCTAAGTAAGTACCAAGGAAA
TGGGAGCCCGAGTTCAACGCGCCGGTGCAACTCGGCAACTCGGTTGCACG
TTTGTTAAAAGTATACTTCGAAGTAGTATGTATCGCCGTGTTCTGTCCAG
GCACCATGCCAGTCCGTCCGGCTCCCATCCGTTCGCCAAAAAACACAACA
CACGTCTTCCACCTCCGAAAACAGGCAACCGGCGGAACTGGGGCGTTCAT
CACCGACAGTTTCAGCTGCTGTTGCTGGACCACCGGAGCAGCATGTGGCC
GACGCCCCATCTGCGGGGGGCGCAGGAACGCCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12030:3456..4140-

>mRNA_Ecto-sp13_S_contig12030.1735.1 ID=mRNA_Ecto-sp13_S_contig12030.1735.1|Name=mRNA_Ecto-sp13_S_contig12030.1735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12030:3456..4140- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGCGGTGAAAAGAGCGGAAACCCCGACGAGATCGTGCCGGGTCCGGG
GGGACACCTTCCCGCCGAAACCCACCGACAAGAAGGCGGCGGAGTCTCGA
ACGGCGGCGGCGGCGGCGGCGGTGGTGATCCCTTCTCGCCGGTCGCGGTA
GTACCGCGGCAACCGGCGGAACTGGGGCGTTCATCACCGACAGTTTCAGC
TGCTGTTGCTGGACCACCGGAGCAGCATGTGGCCGACGCCCCATCTGCGG
GGGGCGCAGGAACGCCC
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