prot_Ecto-sp13_S_contig6528.17337.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6528.17337.1
Unique Nameprot_Ecto-sp13_S_contig6528.17337.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length200
Homology
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A6H5KEG1_9PHAE (SMC hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG1_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 7.050e-78
Identity = 186/201 (92.54%), Postives = 187/201 (93.03%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARPRQGGGSRRGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRPSMEGKRRRVRSG--GERESSSR 199
            MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARP+QG         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   PSMEGKRRRVRSG  GERESSSR
Sbjct:  769 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARPKQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSMEGKRRRVRSGSGGERESSSR 969          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 8.050e-74
Identity = 182/199 (91.46%), Postives = 183/199 (91.96%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARPRQGGGSRRGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRPSMEGKRRRVRSGGERESSSR 199
            MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAA              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RPS+EGKRRRVRSGGERESSSR
Sbjct: 1193 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAAXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSLEGKRRRVRSGGERESSSR 1388          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S1D4Y7_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y7_CYCTE)

HSP 1 Score: 188 bits (478), Expect = 1.200e-56
Identity = 89/114 (78.07%), Postives = 109/114 (95.61%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG 114
            MSQLSGGQKA+VALALIF+IQRCDPAPFYLFDE+DQALDS+YRAAVASL+Q QA+S++NPTQFI +TFRPE+V+VA++CYGISHQNKVS++H L +++AL F+AN+MNEEEAVG
Sbjct:  121 MSQLSGGQKALVALALIFSIQRCDPAPFYLFDELDQALDSTYRAAVASLVQHQANSAENPTQFIVSTFRPELVSVANRCYGISHQNKVSSVHHLSKKDALHFIANLMNEEEAVG 234          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S4R7T2_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R7T2_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.220e-55
Identity = 99/130 (76.15%), Postives = 116/130 (89.23%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG-VELQQPASAARPRQG 129
            MSQLSGGQKA+VALALIFAIQRCDPAPFYLFDE+DQALDS+YRAAVA+LIQRQA+S +NPTQF+ +TFRPE+VAVA++CYGISHQNKVSNIHVL +++AL F+AN+MNEEEAVG V       A+RP  G
Sbjct: 1149 MSQLSGGQKALVALALIFAIQRCDPAPFYLFDELDQALDSTYRAAVAALIQRQANSDENPTQFVCSTFRPELVAVANRCYGISHQNKVSNIHVLSKKDALHFIANLMNEEEAVGEVTSLATTKASRPESG 1278          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S2A7J6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7J6_TRICV)

HSP 1 Score: 189 bits (479), Expect = 4.370e-55
Identity = 90/114 (78.95%), Postives = 108/114 (94.74%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG 114
            MSQLSGGQKA+VA+ALIFAIQRCDPAPFYLFDE+DQALDSS+RAAVA+LIQRQA S +NPTQF+ +TFRPE+VAV+++CYGISHQNKVSN+H L +++AL F+AN+MNEEEAVG
Sbjct:  259 MSQLSGGQKALVAMALIFAIQRCDPAPFYLFDELDQALDSSHRAAVAALIQRQASSDENPTQFVCSTFRPELVAVSNRCYGISHQNKVSNLHHLSKKDALHFIANLMNEEEAVG 372          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S2RIM5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIM5_9STRA)

HSP 1 Score: 188 bits (478), Expect = 8.530e-53
Identity = 94/133 (70.68%), Postives = 113/133 (84.96%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG-----VELQQPASAARPRQ 128
            MSQLSGGQKA+VALALIF+IQRCDPAPFYLFDE+DQALDS+YRAAVA +IQRQA+S DNPTQFI +TFRPE+V +A+ CYGISHQNKVS++H L +++AL F+AN+MNEEEAVG     V  +  AS  R R+
Sbjct:  524 MSQLSGGQKALVALALIFSIQRCDPAPFYLFDELDQALDSTYRAAVAGVIQRQANSEDNPTQFICSTFRPEIVTIANHCYGISHQNKVSSVHYLSKKDALHFIANLMNEEEAVGETSTIVTSRAAASVTRKRK 656          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S4I268_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I268_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.110e-52
Identity = 97/138 (70.29%), Postives = 118/138 (85.51%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARPRQGGGSRRGSRG 138
            MSQLSGGQKA+VALALIFAIQRCDPAPFYLFDE+DQALDS+YRAAVA+LI+RQA+S +NPTQFI +TFRPE+V+VA++CYGISHQNKVSNIH L +++ L F+AN+M+EEEAVG   +  + A   + G    RGSRG
Sbjct: 1156 MSQLSGGQKALVALALIFAIQRCDPAPFYLFDELDQALDSTYRAAVAALIERQANSEENPTQFICSTFRPELVSVANRCYGISHQNKVSNIHHLSKRDGLHFIANLMSEEEAVG---EVTSLATSKKSGSAKSRGSRG 1290          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S0GJA6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJA6_9STRA)

HSP 1 Score: 184 bits (466), Expect = 3.150e-51
Identity = 88/114 (77.19%), Postives = 106/114 (92.98%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG 114
            MSQLSGGQKA+VA+ LIFAIQRCDPAPFYLFDE+DQALDSS+RA+VA+LIQRQA S +NPTQFI +TFRPE+V VA++CYGISHQNKVS+IH L +++A+ F+AN+MNEEEAVG
Sbjct:  503 MSQLSGGQKALVAMGLIFAIQRCDPAPFYLFDELDQALDSSHRASVANLIQRQASSEENPTQFIVSTFRPELVKVANRCYGISHQNKVSSIHHLGKKDAMHFIANLMNEEEAVG 616          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A6V1TI32_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TI32_HETAK)

HSP 1 Score: 176 bits (445), Expect = 7.070e-51
Identity = 86/113 (76.11%), Postives = 101/113 (89.38%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAV 113
            MSQLSGGQKA+VALA+IFAIQRCDPAPFYLFDE+DQALDSSYRA VA+LIQ+QA   DNP QFIT+TFRPE+V+VA + YGISHQNKVSNI+ L +++AL FV ++MNEEE V
Sbjct:  180 MSQLSGGQKALVALAIIFAIQRCDPAPFYLFDELDQALDSSYRAQVAALIQQQARDEDNPAQFITSTFRPELVSVADKTYGISHQNKVSNINPLGKEDALDFVRDLMNEEERV 292          
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S1G3A4_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G3A4_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.560e-50
Identity = 94/128 (73.44%), Postives = 114/128 (89.06%), Query Frame = 0
Query:    1 MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQA-HSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARPR 127
            MSQLSGGQKA+VA+ALIFAIQRCDPAPFYLFDE+DQALDSSYRA+VA+LIQ+QA H  +NPTQF+ +TFRPE+V VA++C+GISHQNKVSNIHVL + +ALGFV+N+MNEEEAV    Q+ +S A+ R
Sbjct: 1113 MSQLSGGQKALVAMALIFAIQRCDPAPFYLFDELDQALDSSYRASVANLIQKQATHDVNNPTQFVCSTFRPEIVQVANRCFGISHQNKVSNIHVLGKTDALGFVSNLMNEEEAV----QKVSSIAKAR 1236          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEG1_9PHAE7.050e-7892.54SMC hinge domain-containing protein n=1 Tax=Ectoca... [more]
D8LEU4_ECTSI8.050e-7491.46Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S1D4Y7_CYCTE1.200e-5678.07Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S4R7T2_9STRA4.220e-5576.15Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2A7J6_TRICV4.370e-5578.95Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2RIM5_9STRA8.530e-5370.68Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4I268_9STRA1.110e-5270.29Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S0GJA6_9STRA3.150e-5177.19Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6V1TI32_HETAK7.070e-5176.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1G3A4_9STRA1.560e-5073.44Structural maintenance of chromosomes protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..178
NoneNo IPR availableGENE3D3.40.50.300coord: 1..115
e-value: 4.5E-35
score: 122.7
NoneNo IPR availablePANTHERPTHR43977FAMILY NOT NAMEDcoord: 1..104
NoneNo IPR availablePANTHERPTHR43977:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3coord: 1..104
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..199
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.482
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 3..89
e-value: 2.0E-27
score: 96.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6528contigEcto-sp13_S_contig6528:2289..4101 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6528.17337.1mRNA_Ecto-sp13_S_contig6528.17337.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6528 1035..5376 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6528.17337.1 ID=prot_Ecto-sp13_S_contig6528.17337.1|Name=mRNA_Ecto-sp13_S_contig6528.17337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLI
QRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEAL
GFVANIMNEEEAVGVELQQPASAARPRQGGGSRRGSRGAGEEEEEEEEEE
EEADEMDVEEEEGDGEEEEEEEEEEARRPSMEGKRRRVRSGGERESSSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase