mRNA_Ecto-sp13_S_contig6528.17337.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6528.17337.1
Unique NamemRNA_Ecto-sp13_S_contig6528.17337.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 1.240e-95
Identity = 225/243 (92.59%), Postives = 227/243 (93.42%), Query Frame = 3 
Query:  138 REGGEEGAGADEEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARPRQGGGSRRGSRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPSMEGKRRRVRSGGERESSSR 866
            REGGE+GAGADEEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAA               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RPS+EGKRRRVRSGGERESSSR
Sbjct: 1149 REGGEDGAGADEEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAAXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSLEGKRRRVRSGGERESSSR 1388
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A6H5KEG1_9PHAE (SMC hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG1_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 4.110e-95
Identity = 220/235 (93.62%), Postives = 221/235 (94.04%), Query Frame = 3 
Query:  168 DEEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARPRQGGGSRRGSRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPSMEGKRRRVRSG--GERESSSR 866
            DEEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARP+QG          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PSMEGKRRRVRSG  GERESSSR
Sbjct:  735 DEEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAARPKQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSMEGKRRRVRSGSGGERESSSR 969
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S1D4Y7_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y7_CYCTE)

HSP 1 Score: 209 bits (531), Expect = 6.710e-59
Identity = 102/140 (72.86%), Postives = 125/140 (89.29%), Query Frame = 3 
Query:  192 SPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG 611
            SP   VS + GV IKV F + GE F+MSQLSGGQKA+VALALIF+IQRCDPAPFYLFDE+DQALDS+YRAAVASL+Q QA+S++NPTQFI +TFRPE+V+VA++CYGISHQNKVS++H L +++AL F+AN+MNEEEAVG
Sbjct:   95 SPDPDVSLYRGVGIKVRFSSVGENFMMSQLSGGQKALVALALIFSIQRCDPAPFYLFDELDQALDSTYRAAVASLVQHQANSAENPTQFIVSTFRPELVSVANRCYGISHQNKVSSVHHLSKKDALHFIANLMNEEEAVG 234
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A6V1TI32_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TI32_HETAK)

HSP 1 Score: 207 bits (528), Expect = 1.300e-57
Identity = 108/153 (70.59%), Postives = 128/153 (83.66%), Query Frame = 3 
Query:  150 EEGAGADEEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAV 608
            EE  GA+E +    SPT+ V+ FVGVQI+VSF   GE FLMSQLSGGQKA+VALA+IFAIQRCDPAPFYLFDE+DQALDSSYRA VA+LIQ+QA   DNP QFIT+TFRPE+V+VA + YGISHQNKVSNI+ L +++AL FV ++MNEEE V
Sbjct:  141 EEDDGAEESKGGDSSPTS-VNQFVGVQIRVSFSGDGEQFLMSQLSGGQKALVALAIIFAIQRCDPAPFYLFDELDQALDSSYRAQVAALIQQQARDEDNPAQFITSTFRPELVSVADKTYGISHQNKVSNINPLGKEDALDFVRDLMNEEERV 292
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S2ANS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANS6_9STRA)

HSP 1 Score: 214 bits (545), Expect = 5.010e-57
Identity = 110/156 (70.51%), Postives = 127/156 (81.41%), Query Frame = 3 
Query:  168 DEEEPNGL--SPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQP 629
            DEEE +G   +P   VSDF GVQ+KVSF   GE FLMSQLSGGQKA+VAL+++FAIQRCDPAPFYLFDE+DQALDS+YRAAVA++IQRQA    NPTQFITTTFRPE+V VA++CYGIS QNK SNIH L + EAL FVA++MNEEE VG     P
Sbjct:  425 DEEEGDGSGGTPRMTVSDFEGVQVKVSFTPGGEVFLMSQLSGGQKAIVALSIVFAIQRCDPAPFYLFDELDQALDSTYRAAVAAMIQRQASHPTNPTQFITTTFRPELVNVAAKCYGISLQNKNSNIHPLSKGEALSFVADLMNEEEGVGTVSATP 580
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S4R7T2_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R7T2_9STRA)

HSP 1 Score: 214 bits (546), Expect = 6.390e-55
Identity = 111/161 (68.94%), Postives = 134/161 (83.23%), Query Frame = 3 
Query:  177 EPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG-VELQQPASAARPRQG 656
            +P+ LS    V+ + G+ IKV F   GE +LMSQLSGGQKA+VALALIFAIQRCDPAPFYLFDE+DQALDS+YRAAVA+LIQRQA+S +NPTQF+ +TFRPE+VAVA++CYGISHQNKVSNIHVL +++AL F+AN+MNEEEAVG V       A+RP  G
Sbjct: 1122 DPSNLS----VNMYRGIGIKVRFSRVGENYLMSQLSGGQKALVALALIFAIQRCDPAPFYLFDELDQALDSTYRAAVAALIQRQANSDENPTQFVCSTFRPELVAVANRCYGISHQNKVSNIHVLSKKDALHFIANLMNEEEAVGEVTSLATTKASRPESG 1278
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S2A7J6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7J6_TRICV)

HSP 1 Score: 200 bits (508), Expect = 7.950e-54
Identity = 96/135 (71.11%), Postives = 120/135 (88.89%), Query Frame = 3 
Query:  207 VSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG 611
            V+ + G+ +KV F    + +LMSQLSGGQKA+VA+ALIFAIQRCDPAPFYLFDE+DQALDSS+RAAVA+LIQRQA S +NPTQF+ +TFRPE+VAV+++CYGISHQNKVSN+H L +++AL F+AN+MNEEEAVG
Sbjct:  238 VNLYRGIGVKVRFTQEEQNYLMSQLSGGQKALVAMALIFAIQRCDPAPFYLFDELDQALDSSHRAAVAALIQRQASSDENPTQFVCSTFRPELVAVSNRCYGISHQNKVSNLHHLSKKDALHFIANLMNEEEAVG 372
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S2RIM5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIM5_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.040e-53
Identity = 103/154 (66.88%), Postives = 126/154 (81.82%), Query Frame = 3 
Query:  207 VSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG-----VELQQPASAARPRQ 653
            V  + G+ IKV F A GE ++MSQLSGGQKA+VALALIF+IQRCDPAPFYLFDE+DQALDS+YRAAVA +IQRQA+S DNPTQFI +TFRPE+V +A+ CYGISHQNKVS++H L +++AL F+AN+MNEEEAVG     V  +  AS  R R+
Sbjct:  503 VHSYKGIGIKVRFSAVGENYMMSQLSGGQKALVALALIFSIQRCDPAPFYLFDELDQALDSTYRAAVAGVIQRQANSEDNPTQFICSTFRPEIVTIANHCYGISHQNKVSSVHYLSKKDALHFIANLMNEEEAVGETSTIVTSRAAASVTRKRK 656
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A7S0GJA6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJA6_9STRA)

HSP 1 Score: 203 bits (516), Expect = 8.530e-53
Identity = 98/135 (72.59%), Postives = 121/135 (89.63%), Query Frame = 3 
Query:  207 VSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVG 611
            VS + GV++KV F A GE ++MSQLSGGQKA+VA+ LIFAIQRCDPAPFYLFDE+DQALDSS+RA+VA+LIQRQA S +NPTQFI +TFRPE+V VA++CYGISHQNKVS+IH L +++A+ F+AN+MNEEEAVG
Sbjct:  482 VSLYRGVEVKVRFSAVGENYMMSQLSGGQKALVAMGLIFAIQRCDPAPFYLFDELDQALDSSHRASVANLIQRQASSEENPTQFIVSTFRPELVKVANRCYGISHQNKVSSIHHLGKKDAMHFIANLMNEEEAVG 616
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BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Match: A0A836CH46_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH46_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.010e-52
Identity = 114/190 (60.00%), Postives = 133/190 (70.00%), Query Frame = 3 
Query:  156 GAGADEEEPNGLSPTTLVSDFVGVQIKVSFVAAGETFLMSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLIQRQA---------------------------HSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEALGFVANIMNEEEAVGVELQQPASAAR 644
            G G    +P  +S    VS + GVQI+VSF   GE  LMSQLSGGQKA+VALALIFAIQRCDPAPFYLFDEIDQALDSSYR A+A+LIQRQA                           HS + PTQFITTTFRPE+V+VA++ YGISHQNKVSNI ++ R+EALGFVA I++EEEAVG +L QP +  R
Sbjct: 1089 GEGGAASQPGAVS----VSQYTGVQIRVSFTGTGEAHLMSQLSGGQKALVALALIFAIQRCDPAPFYLFDEIDQALDSSYRGALAALIQRQASMRSALHARQASAARALLSDITFVHRAHSQETPTQFITTTFRPELVSVAARAYGISHQNKVSNIELMTREEALGFVAEILHEEEAVGTKLAQPTAQRR 1274
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6528.17337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEU4_ECTSI1.240e-9592.59Structural maintenance of chromosomes protein n=1 ... [more]
A0A6H5KEG1_9PHAE4.110e-9593.62SMC hinge domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1D4Y7_CYCTE6.710e-5972.86Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A6V1TI32_HETAK1.300e-5770.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2ANS6_9STRA5.010e-5770.51Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4R7T2_9STRA6.390e-5568.94Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2A7J6_TRICV7.950e-5471.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2RIM5_9STRA1.040e-5366.88Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0GJA6_9STRA8.530e-5372.59Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A836CH46_9STRA1.010e-5260.00Structural maintenance of chromosomes protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6528contigEcto-sp13_S_contig6528:1035..5376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score256.5
Seed ortholog evalue1e-65
Seed eggNOG ortholog2880.D8LEU4
Preferred nameSMC3
Model size2123
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000922,GO:0001736,GO:0001737,GO:0001738,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003774,GO:0003777,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007164,GO:0007275,GO:0007346,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008092,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008278,GO:0008544,GO:0009506,GO:0009507,GO:0009536,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0015630,GO:0015631,GO:0016043,GO:0016301,GO:0016310,GO:0016363,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030435,GO:0030437,GO:0030855,GO:0030892,GO:0030893,GO:0031012,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032505,GO:0032875,GO:0032876,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034293,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0034991,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035821,GO:0035825,GO:0036033,GO:0036211,GO:0040012,GO:0040017,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044788,GO:0044789,GO:0044791,GO:0044794,GO:0044877,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048468,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048563,GO:0048569,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051171,GO:0051172,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051493,GO:0051641,GO:0051702,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051817,GO:0051851,GO:0055044,GO:0060147,GO:0060236,GO:0060255,GO:0060429,GO:0060562,GO:0060966,GO:0060968,GO:0061775,GO:0061780,GO:0061982,GO:0061983,GO:0062022,GO:0062023,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0070601,GO:0070727,GO:0070840,GO:0071168,GO:0071704,GO:0071840,GO:0071921,GO:0071960,GO:0071962,GO:0072686,GO:0080090,GO:0090169,GO:0090224,GO:0090304,GO:0090329,GO:0097159,GO:0097431,GO:0098687,GO:0098727,GO:0098813,GO:0099086,GO:0120036,GO:0140013,GO:0140014,GO:0140096,GO:1900368,GO:1901360,GO:1901363,GO:1901564,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903046,GO:1903047,GO:1903900,GO:1903902,GO:1990414,GO:2000104,GO:2000112,GO:2000113
Exons5
EggNOG free text desc.maintenance of mitotic sister chromatid cohesion, centromeric
EggNOG OGsCOG1196@1,KOG0964@2759
Cds size600
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00535,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6528.17337.1prot_Ecto-sp13_S_contig6528.17337.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6528 2289..4101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.485026-UTR-Ecto-sp13_S_contig6528:1034..22881681463900.485026-UTR-Ecto-sp13_S_contig6528:1034..2288Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6528 1035..2288 -
1681463900.5412238-UTR-Ecto-sp13_S_contig6528:4101..41341681463900.5412238-UTR-Ecto-sp13_S_contig6528:4101..4134Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6528 4102..4134 -
1681463900.5519938-UTR-Ecto-sp13_S_contig6528:4693..48461681463900.5519938-UTR-Ecto-sp13_S_contig6528:4693..4846Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6528 4694..4846 -
1681463900.562308-UTR-Ecto-sp13_S_contig6528:5293..53761681463900.562308-UTR-Ecto-sp13_S_contig6528:5293..5376Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6528 5294..5376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.502231-CDS-Ecto-sp13_S_contig6528:2288..26271681463900.502231-CDS-Ecto-sp13_S_contig6528:2288..2627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6528 2289..2627 -
1681463900.5140676-CDS-Ecto-sp13_S_contig6528:3572..37251681463900.5140676-CDS-Ecto-sp13_S_contig6528:3572..3725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6528 3573..3725 -
1681463900.5266736-CDS-Ecto-sp13_S_contig6528:3993..41011681463900.5266736-CDS-Ecto-sp13_S_contig6528:3993..4101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6528 3994..4101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6528.17337.1

>prot_Ecto-sp13_S_contig6528.17337.1 ID=prot_Ecto-sp13_S_contig6528.17337.1|Name=mRNA_Ecto-sp13_S_contig6528.17337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MSQLSGGQKAVVALALIFAIQRCDPAPFYLFDEIDQALDSSYRAAVASLI
QRQAHSSDNPTQFITTTFRPEMVAVASQCYGISHQNKVSNIHVLPRQEAL
GFVANIMNEEEAVGVELQQPASAARPRQGGGSRRGSRGAGEEEEEEEEEE
EEADEMDVEEEEGDGEEEEEEEEEEARRPSMEGKRRRVRSGGERESSSR*
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mRNA from alignment at Ecto-sp13_S_contig6528:1035..5376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6528.17337.1 ID=mRNA_Ecto-sp13_S_contig6528.17337.1|Name=mRNA_Ecto-sp13_S_contig6528.17337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6528:1035..5376- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTTCCAAGGACGCTGAGGAGGAGGAAGAGGAGGAGGGAGAAGAGGAG
GATGAAGGGGAGGGTGACGACGAAGCAGGGAACGTGAGAAGTTAGGTTAG
CGAGATGTTTCTGGGGTATGGAGGGGGTGCGCGATGTGAATGGGGTAGGT
GTCGTTGCGGAGACGGGGATCCTCTGCAGCTGACCCTGTCCGTTGCTGTT
GTAGCCACCACGGAACCTCCCGTCCCAGACCTTCCGAAAGAGAACGAAAA
GCGACGACAGCCGGCGGGACATGTCGGAACGCTCAAGTCCGGACCAAAAC
GTCGAATATCCCAAGTTAAAGGAAAGGCGGCAACGGAAGGGCGGGATATT
TCCTTCCCGTCCAGGATTGGAGAACGTTTTGCCAGAACCATGGGTGCGGT
TCTCCACGTGCGAAAAGCCTATAATAGCTTTACTTCGTTGATTGTGTATC
CCTTACTTCCTTTCTATCCCCTCCTCTCCTCCGCCGTCTTCCTCTCGTGC
AACACCGAAATGTGTTGATACCAACGATAGCACGGGTCCGGCAATAAATC
TTCAAAAGGGAAAGGGAAAGCCAAGGCCAAGGCACGGGAAGGAGGAGAAG
AAGGAGCGGGGGCGGATGAAGAAGAGCCGAACGGCTTGTCGCCAACGACG
CTGGTCAGCGACTTCGTCGGCGTCCAGATCAAGGTTAGGCAGTCCCCTCG
TCGATCGTGGCGTTGTTTTAGTGTCAACGCGTAGGGCGTGTCGCTTTTTT
CTCTTTCGTTTGGCGTTGTTGCATGGTTTTGACAAAATGATAGTTTTTTG
TGCGGTTTTGGGATCCACATTGACGTCGATATTTTTTTATCTCGTCAGGT
GTCGTGCTTTTCATTGGTGTGTTTAGCGTTGTGCACGTTTTGTTGGGTAC
CGTTTCGATCGGTGAGGAATATCGATATTCTTGTGCCATGTAGACCATGA
AGGTGGTCTGCTACCTGCTGGATCAGGGAGGAATATGGGGACGACAGGAA
GGTAGGAAGGAATGATGGTGTTTGGTGACACTCCTCGGGTCGACGTGAAA
AGGCCCACAGCGTCGCTGTGTGTGTTGTTCTCTTTTTCTTCTATTTCTCG
CCGTTGGATGTCCACCGATCGTTGATGGTGTTTTGTTTTTCTCCCCATCG
CCGATGGTCGCATTCTTCGGCCGTTATGTCTATGAACGCCCTTCCCGTGA
CTTCTTGTGATCGTCTGGTGCCGTGGTCGTGGTCTTGGTTAGGTGTCGTT
CGTGGCCGCGGGGGAGACGTTCCTCATGTCGCAGCTCTCGGGGGGGCAGA
AGGCCGTGGTGGCTCTCGCCCTCATCTTCGCGATTCAGCGCTGCGACCCC
GCCCCCTTCTACTTGTTCGACGAGATTGACCAGGTGAGAAGGGTGCGGAC
GAGAGCTCAGGTCGATGTACGAAAGGGAGGTGCTTCTGTCGTGTTGTCAG
TTGTCGTCTGCGTTTCATGATTCGTATTTCAAACGAACCAGACTTTGGAC
AGCCCCAGCGACCTGGTTGTGGTGTGCCCCATGGTGATCGTCTACTGAAC
ACTTAGTTTGGTTTTCCGTTCGGCAAATATTCCGCGTGGGTCCAACCTGT
GCATGTTTCCAAATTTACTTTTTTTGTTTCGGTTTTTCACGGCCAAACCA
GGCACTGGATAGCTCCTACCGCGCGGCCGTGGCCTCCCTGATCCAGAGGC
AAGCCCACTCGTCGGACAACCCGACGCAGTTCATCACCACCACGTTTCGC
CCGGAGATGGTGGCTGTCGCAAGCCAGTGCTACGGAATCTCCCACCAGAA
CAAGGTACGCGTACGTTTGGGCTCCGCTTCTCAGGCGAGAAAATGACCTT
CAGGCGAATAGCTGCAACGTAGGTGCTGTGTTGGGGTTGCAATTCGCCCC
GAAACGGTTTCAGCTGAAATGCGATGCAAGTGCTTCGTGACCAGAGTGGT
GGTGCGTGTTTTGTTTTTATCTTGGCTCGCCGCACGCGACCGGATCTCCC
ACCGGAACTAGTGTTGGCGTGTGTGGCGAAGTTCATCCTGTCGGGCGTTC
TACATCTACAGTTTCGAGTTTCACCTATAGGTCCGATCTTGAGCGAAGTA
CAATGCGACCGATCGTTTGTGGGGATGTACGGTTTCCATGTAACGAGCGC
CAACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCTTCCTTCGCTTTCTCTTCTTTTTATTCACAACAAAAAAA
AACAGATGTAGTTAGAGAAGAGANNNNNNNNNNGATTGTTGTGGGGGGGG
TGTTGCGTTCTAACAAGGACCCCGCCCCCCCCCCCCCCCCCCCCCCCATG
CCTCAAGGCAGCTCCGCTGCTCCTGGGTGATTTCGCATGCTTATTAACGA
AGTGATCAAGAAAATCCAGGGTAGTTATACATCGTTCGTGGATGGTTTGA
TCGTCTTCGATTGACTCCTGCGCTCTGTTTGAACGATTGCGTACACACAA
CTTGAAACTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ACAGGCAGAAGAAAACACACCCAGACGGCCTCGCGGCCGGGGCTGTGCAC
GCGCGCCACACCAACAANNNNNNNNNNTTTTTTTTTGTTTCTTGCAGAGT
ACGCGATAGGATCAGCCGTGGTGGTTGGAGGATTGTGTACTCCCACTCCG
AACACAACCCCCCCCCCCCCCTCCCCCCGTCCTCACCCGCCCACCGAAGG
TGAGCAACATCCACGTCCTGCCGCGCCAGGAGGCTCTGGGTTTCGTGGCC
AACATCATGAACGAAGAAGAGGCCGTCGGGGTGGAGCTGCAGCAGCCCGC
GAGCGCCGCTCGCCCAAGGCAGGGAGGAGGGTCACGCCGGGGCAGCAGAG
GTGCTGGGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGCGGAC
GAGATGGACGTCGAGGAAGAGGAGGGCGATGGCGAGGAGGAAGAGGAGGA
AGAGGAAGAGGAGGCTCGTAGGCCGTCCATGGAGGGCAAGAGGCGCAGGG
TTAGGAGTGGGGGCGAACGGGAGTCTTCTTCGCGATAGGGGTGCGGCGCA
TCATGGCGCGCGCGCGGCGACGACGATGACAATGACGCTGTTGGCGTGGA
CAAATACCTTGGATTGTTTCAGCCTTCCGGTTGTTCTTGTGTGACGGCAA
GGGTACCGTGCGCGAGCTTGTCTTGGGTTCTCGGTAGCGGGAGCTGACTG
GATTCCTTGTTCTTTGTGTGGGACAGGCACTATTTTTACCGAGAGCGCAT
ACTCTGTGACGATAATTGGGATTTGGGGAGACGGAACAGCCAACCGAATG
TCCGGCGTATGTTTCGTCTCGTTTATCAGGCAAACATACGTGGTCGTACC
TTGGGTAGAGCGGCTGAATGAAGAGACACAGTTGAGGCGCAACATGTCTG
TCAGAAGACGGCCATCGAAGATTATTTGGGACTTGACTAATTTCCTCGGC
AAGACAGACAGACAGAGAGAGGGCTTGTTGCTTTCCTAGACGCTCAGCTC
AACCCAGGTGCACTCAGAAACGCAGGCCTCTCTTGCCCGACAAACGACCG
GGAAGCACCCTTCGCGAGGAATGAATGGAGGTGAACTTCCCTGTTTTACG
CAGAAAAGAAAAGGAGACGAAAGAGCTTTTCGCATTCCACCAACAACACC
GCGGATCCTTGACGTTGTGCACCGGATTGTGTTGGTTTTTGCAGGGGTTT
TTCCGAAGTCGAAGGCGGGGCGTTTGGACGGGCTCAAACGGAAGCCCGGG
CGCCTGATTCTGGTTGATTGCTGCCTTCGTTTCGCCGGAATATTGCTTGA
TGCGGACTGGACGTGCAGATTGTATCGACTCAGAGGGGTGCTCTTTGCTT
GATGGCGATAGCATGCGTCGGGCGTTCACTCGTAGCTTGCGTTTTTTCGT
CTTGCGATGTAGGGTTCCCGCCCGCCTGCCTGCATATATATCACAGTGGG
ATTAGGAACTTGCAATTATGCATCTGTGGAAGAGACCTGAACATTGTGAG
GAGGCGATTGTAGTCTTTCATCAACGTCTGGTCGGGCGTTTCCAGACTAG
ACAGGGGCAGAAGGGCGGGTGCTGCTGCGACCAGGGGCGGCATGGTGAAA
TTGAGCCACGAGGATATGACAATGCCCTGCAAATATGATTTCTCTTTTTT
CTGTACCTTTGCACCGAATGTTGCACCGAATGTGATGTATTCAGGGTGTT
AACTCTTCGCGATGTATATTTTTCGTGGCGGTCTTGTCTGGTTGTTTCGT
GCTGAATTTTTTTACGATCTGTGTGCATGGCAGGTCACACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6528:1035..5376-

>mRNA_Ecto-sp13_S_contig6528.17337.1 ID=mRNA_Ecto-sp13_S_contig6528.17337.1|Name=mRNA_Ecto-sp13_S_contig6528.17337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6528:1035..5376- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCAGCTCTCGGGGGGGCAGAAGGCCGTGGTGGCTCTCGCCCTCAT
CTTCGCGATTCAGCGCTGCGACCCCGCCCCCTTCTACTTGTTCGACGAGA
TTGACCAGGCACTGGATAGCTCCTACCGCGCGGCCGTGGCCTCCCTGATC
CAGAGGCAAGCCCACTCGTCGGACAACCCGACGCAGTTCATCACCACCAC
GTTTCGCCCGGAGATGGTGGCTGTCGCAAGCCAGTGCTACGGAATCTCCC
ACCAGAACAAGGTGAGCAACATCCACGTCCTGCCGCGCCAGGAGGCTCTG
GGTTTCGTGGCCAACATCATGAACGAAGAAGAGGCCGTCGGGGTGGAGCT
GCAGCAGCCCGCGAGCGCCGCTCGCCCAAGGCAGGGAGGAGGGTCACGCC
GGGGCAGCAGAGGTGCTGGGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAG
GAGGAAGCGGACGAGATGGACGTCGAGGAAGAGGAGGGCGATGGCGAGGA
GGAAGAGGAGGAAGAGGAAGAGGAGGCTCGTAGGCCGTCCATGGAGGGCA
AGAGGCGCAGGGTTAGGAGTGGGGGCGAACGGGAGTCTTCTTCGCGATAG
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