prot_Ecto-sp13_S_contig6514.17315.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6514.17315.1
Unique Nameprot_Ecto-sp13_S_contig6514.17315.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length328
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6514.17315.1 vs. uniprot
Match: D7FI17_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI17_ECTSI)

HSP 1 Score: 459 bits (1181), Expect = 2.640e-160
Identity = 265/340 (77.94%), Postives = 274/340 (80.59%), Query Frame = 0 
Query:    1 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSIEGGGLLSDAKATSAPPPLPPAAGFVMPPCTHRGAPPA-GSGRGRGHTAVEEGERTAAAEAGCPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXXXXXXXQGRGTDVVDVWAGSSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLYDWNPKSSAVTQRIYYL----LRW-------CHLGLLGRRQVLGFHAAHRVCCWLLCGLRQWLVRLFATPQSRYS 328
            MCARIA QQRQRASAARRLRQAEDERRLE LVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGS EGGGL SDAKAT+APP LPPAAGFVMPPCTHRGAPPA GSGRGR HTAVEEGERTAAAEA CPECAAIAAAHVLAGAGA                      QGRGTDV DVWAGSSLGVLNADALHR+LTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHL+DWNPKSSAVTQR + L      W       C + +L    V+G         WL  GL QW V LFATPQ+RY+
Sbjct:    1 MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPP-LPPAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQ------------QGRGTDVFDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQRSFILRCVGATWSCWAGGKCWVSMLLIACVVG---------WLR-GLCQWRVGLFATPQNRYN 317
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BLAST of mRNA_Ecto-sp13_S_contig6514.17315.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 5.230e-143
Identity = 250/276 (90.58%), Postives = 254/276 (92.03%), Query Frame = 0 
Query:    1 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSIEGGGLLSDAKATSAPPPLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEEGERTAAAEAGCPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXXXXXXXQGRGTDVVDVWAGSSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLYDWNPKSSAVTQ 276
            MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLS NNHLQQLRASVDASWSSFSTAWDARRARGSGSGS +GGG            PLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVE+GERT AAEA CPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXX     QGRGTDVVDVWAGSSLGVLNADAL RALTFL+PRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHL+DWNPKSSAVTQ
Sbjct:  154 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSANNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTDGGG------------PLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEQGERTLAAEAECPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXX-----QGRGTDVVDVWAGSSLGVLNADALQRALTFLEPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ 412
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BLAST of mRNA_Ecto-sp13_S_contig6514.17315.1 vs. uniprot
Match: A0A835Z6K8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6K8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.480e-10
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0 
Query:  196 SSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLYDWNPKSSAVTQ 276
            S L +L  D   R L  LQP DL ELAQAS+G + AAD++ +W  +W  RFG +W S+  + AA RWH + W+P   A  Q
Sbjct:   98 SFLPLLPDDLRLRCLALLQPEDLFELAQASKGCQAAADAEPLWAGLWQYRFGRVWASQPLQDAAERWHCH-WDPLRHAPLQ 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6514.17315.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI17_ECTSI2.640e-16077.94F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KFP0_9PHAE5.230e-14390.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6K8_9STRA1.480e-1045.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
IPR001810F-box domainPROSITEPS50181FBOXcoord: 195..241
score: 8.915
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 186..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6514contigEcto-sp13_S_contig6514:5513..6575 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6514.17315.1mRNA_Ecto-sp13_S_contig6514.17315.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6514 5513..6575 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6514.17315.1 ID=prot_Ecto-sp13_S_contig6514.17315.1|Name=mRNA_Ecto-sp13_S_contig6514.17315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=328bp
MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNH
LQQLRASVDASWSSFSTAWDARRARGSGSGSIEGGGLLSDAKATSAPPPL
PPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEEGERTAAAEAGCPECAAIA
AAHVLAGAGAATTGGRLLRQQQQQQQQQKQQQQGRGTDVVDVWAGSSLGV
LNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIW
ESEICKKAARRWHLYDWNPKSSAVTQRIYYLLRWCHLGLLGRRQVLGFHA
AHRVCCWLLCGLRQWLVRLFATPQSRYS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf