mRNA_Ecto-sp13_S_contig6514.17315.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6514.17315.1
Unique NamemRNA_Ecto-sp13_S_contig6514.17315.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6514.17315.1 vs. uniprot
Match: D7FI17_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI17_ECTSI)

HSP 1 Score: 459 bits (1181), Expect = 2.640e-160
Identity = 265/340 (77.94%), Postives = 274/340 (80.59%), Query Frame = 1 
Query:    1 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSIEGGGLLSDAKATSAPPPLPPAAGFVMPPCTHRGAPPA-GSGRGRGHTAVEEGERTAAAEAGCPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXXXXXXXQGRGTDVVDVWAGSSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLYDWNPKSSAVTQRIYYL----LRW-------CHLGLLGRRQVLGFHAAHRVCCWLLCGLRQWLVRLFATPQSRYS 984
            MCARIA QQRQRASAARRLRQAEDERRLE LVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGS EGGGL SDAKAT+APP LPPAAGFVMPPCTHRGAPPA GSGRGR HTAVEEGERTAAAEA CPECAAIAAAHVLAGAGA                      QGRGTDV DVWAGSSLGVLNADALHR+LTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHL+DWNPKSSAVTQR + L      W       C + +L    V+G         WL  GL QW V LFATPQ+RY+
Sbjct:    1 MCARIAEQQRQRASAARRLRQAEDERRLERLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTEGGGLHSDAKATAAPP-LPPAAGFVMPPCTHRGAPPAAGSGRGRRHTAVEEGERTAAAEAECPECAAIAAAHVLAGAGAATTGGRLQQQ------------QGRGTDVFDVWAGSSLGVLNADALHRSLTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQRSFILRCVGATWSCWAGGKCWVSMLLIACVVG---------WLR-GLCQWRVGLFATPQNRYN 317
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BLAST of mRNA_Ecto-sp13_S_contig6514.17315.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 5.230e-143
Identity = 250/276 (90.58%), Postives = 254/276 (92.03%), Query Frame = 1 
Query:    1 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNHLQQLRASVDASWSSFSTAWDARRARGSGSGSIEGGGLLSDAKATSAPPPLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEEGERTAAAEAGCPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXXXXXXXQGRGTDVVDVWAGSSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLYDWNPKSSAVTQ 828
            MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLS NNHLQQLRASVDASWSSFSTAWDARRARGSGSGS +GGG            PLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVE+GERT AAEA CPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXX     QGRGTDVVDVWAGSSLGVLNADAL RALTFL+PRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHL+DWNPKSSAVTQ
Sbjct:  154 MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSANNHLQQLRASVDASWSSFSTAWDARRARGSGSGSTDGGG------------PLPPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEQGERTLAAEAECPECAAIAAAHVLAGAGAXXXXXXXXXXXXXXXXX-----QGRGTDVVDVWAGSSLGVLNADALQRALTFLEPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLHDWNPKSSAVTQ 412
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BLAST of mRNA_Ecto-sp13_S_contig6514.17315.1 vs. uniprot
Match: A0A835Z6K8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6K8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.480e-10
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  586 SSLGVLNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIWESEICKKAARRWHLYDWNPKSSAVTQ 828
            S L +L  D   R L  LQP DL ELAQAS+G + AAD++ +W  +W  RFG +W S+  + AA RWH + W+P   A  Q
Sbjct:   98 SFLPLLPDDLRLRCLALLQPEDLFELAQASKGCQAAADAEPLWAGLWQYRFGRVWASQPLQDAAERWHCH-WDPLRHAPLQ 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6514.17315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI17_ECTSI2.640e-16077.94F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KFP0_9PHAE5.230e-14390.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6K8_9STRA1.480e-1045.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6514contigEcto-sp13_S_contig6514:5513..6575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size984
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-00_000680.1
Cds size984
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.4032626-CDS-Ecto-sp13_S_contig6514:5512..56681681463898.4032626-CDS-Ecto-sp13_S_contig6514:5512..5668Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6514 5513..5668 -
1681463898.413311-CDS-Ecto-sp13_S_contig6514:5747..65751681463898.413311-CDS-Ecto-sp13_S_contig6514:5747..6575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6514 5748..6575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6514.17315.1prot_Ecto-sp13_S_contig6514.17315.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6514 5513..6575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6514.17315.1

>prot_Ecto-sp13_S_contig6514.17315.1 ID=prot_Ecto-sp13_S_contig6514.17315.1|Name=mRNA_Ecto-sp13_S_contig6514.17315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=328bp
MCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSVNNH
LQQLRASVDASWSSFSTAWDARRARGSGSGSIEGGGLLSDAKATSAPPPL
PPAAGFVMPPCTHRGAPPAGSGRGRGHTAVEEGERTAAAEAGCPECAAIA
AAHVLAGAGAATTGGRLLRQQQQQQQQQKQQQQGRGTDVVDVWAGSSLGV
LNADALHRALTFLQPRDLLELAQASRGAREAADSQLVWREVWWARFGAIW
ESEICKKAARRWHLYDWNPKSSAVTQRIYYLLRWCHLGLLGRRQVLGFHA
AHRVCCWLLCGLRQWLVRLFATPQSRYS
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mRNA from alignment at Ecto-sp13_S_contig6514:5513..6575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6514.17315.1 ID=mRNA_Ecto-sp13_S_contig6514.17315.1|Name=mRNA_Ecto-sp13_S_contig6514.17315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6514:5513..6575- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGCCAGGATCGCCGCGCAGCAGCGGCAGCGGGCCTCGGCCGCGAG
GCGCCTGCGCCAGGCGGAGGATGAGCGCAGGCTCGAGAGCTTGGTGGCGG
GGAGGACGGCGATGATGATCCGGCCGCTGGACCTGTCTGTGAACAACCAC
CTGCAGCAGCTGCGCGCGTCGGTGGACGCGTCGTGGTCGTCTTTCTCGAC
CGCCTGGGACGCGAGACGGGCGAGGGGTAGCGGGTCGGGAAGCATCGAAG
GCGGCGGGCTGCTGTCGGACGCGAAGGCGACTTCTGCGCCGCCGCCGCTA
CCCCCCGCCGCCGGGTTCGTGATGCCCCCCTGCACCCACCGCGGAGCCCC
CCCCGCCGGCAGTGGGAGAGGGCGAGGGCACACGGCCGTCGAAGAGGGGG
AGAGAACAGCAGCGGCGGAGGCGGGGTGCCCGGAGTGCGCCGCTATTGCC
GCCGCACACGTGCTCGCCGGCGCCGGCGCCGCAACCACCGGTGGGCGGCT
GCTGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGCAGG
GGAGGGGTACCGACGTCGTCGACGTCTGGGCGGGTTCCTCGCTGGGGGTT
CTCAACGCGGACGCGCTGCACAGGGCGCTGACCTTCCTGCAGCCCCGGGA
CCTGCTAGAGCTGGCGCAGGCATCGAGGGGGGCCCGGGAGGCGGCGGACT
CGCAGCTGGTGTGGAGGGAGGTGTGGTGGGCGAGGTTCGGAGCGATCTGG
GAGTCGGAAATCTGCAAGAAGGCAGCGCGGAGATGGCACCTGTACGATTG
GAACCCTAAGTCGTCTGCGGTAACCCAGGTCAGAGTTCTGAGCCGTTTTT
TTTGTAGGGGGGGGGGCGAGGGACGGATGGGGAATGGGTTTGCTCGTGTA
TATACAGCGTATTTATTATCTGTTGCGTTGGTGCCACCTGGGGTTGCTGG
GCCGGCGGCAAGTGCTGGGTTTCCATGCTGCCCATCGCGTGTGCTGTTGG
TTGTTGTGTGGTTTGCGCCAATGGCTAGTACGGCTGTTTGCGACACCTCA
GAGCAGATACAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6514:5513..6575-

>mRNA_Ecto-sp13_S_contig6514.17315.1 ID=mRNA_Ecto-sp13_S_contig6514.17315.1|Name=mRNA_Ecto-sp13_S_contig6514.17315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6514:5513..6575- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGCCAGGATCGCCGCGCAGCAGCGGCAGCGGGCCTCGGCCGCGAG
GCGCCTGCGCCAGGCGGAGGATGAGCGCAGGCTCGAGAGCTTGGTGGCGG
GGAGGACGGCGATGATGATCCGGCCGCTGGACCTGTCTGTGAACAACCAC
CTGCAGCAGCTGCGCGCGTCGGTGGACGCGTCGTGGTCGTCTTTCTCGAC
CGCCTGGGACGCGAGACGGGCGAGGGGTAGCGGGTCGGGAAGCATCGAAG
GCGGCGGGCTGCTGTCGGACGCGAAGGCGACTTCTGCGCCGCCGCCGCTA
CCCCCCGCCGCCGGGTTCGTGATGCCCCCCTGCACCCACCGCGGAGCCCC
CCCCGCCGGCAGTGGGAGAGGGCGAGGGCACACGGCCGTCGAAGAGGGGG
AGAGAACAGCAGCGGCGGAGGCGGGGTGCCCGGAGTGCGCCGCTATTGCC
GCCGCACACGTGCTCGCCGGCGCCGGCGCCGCAACCACCGGTGGGCGGCT
GCTGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGCAGCAGG
GGAGGGGTACCGACGTCGTCGACGTCTGGGCGGGTTCCTCGCTGGGGGTT
CTCAACGCGGACGCGCTGCACAGGGCGCTGACCTTCCTGCAGCCCCGGGA
CCTGCTAGAGCTGGCGCAGGCATCGAGGGGGGCCCGGGAGGCGGCGGACT
CGCAGCTGGTGTGGAGGGAGGTGTGGTGGGCGAGGTTCGGAGCGATCTGG
GAGTCGGAAATCTGCAAGAAGGCAGCGCGGAGATGGCACCTGTACGATTG
GAACCCTAAGTCGTCTGCGGTAACCCAGCGTATTTATTATCTGTTGCGTT
GGTGCCACCTGGGGTTGCTGGGCCGGCGGCAAGTGCTGGGTTTCCATGCT
GCCCATCGCGTGTGCTGTTGGTTGTTGTGTGGTTTGCGCCAATGGCTAGT
ACGGCTGTTTGCGACACCTCAGAGCAGATACAGC
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