mRNA_Ecto-sp13_S_contig6509.17304.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6509.17304.1
Unique NamemRNA_Ecto-sp13_S_contig6509.17304.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6509.17304.1 vs. uniprot
Match: D7FUA9_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUA9_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 4.200e-61
Identity = 121/163 (74.23%), Postives = 128/163 (78.53%), Query Frame = 2 
Query:   71 MAALFRAATWVLPLVLADAAAXXXXXXXXXXXXXXXLFEAETYHXXXXXXXPSPTSPREGGRTFSPTNGGGSGNGVASSHDKDEVSVRRRYNGQQKRSTGWFGWAPDARQHARKPRLSGDLPAGFIASPTAALGQQRRGARTCG-SSSGGHSPLRSFGGGTEA 556
            MAALFRAATWVLPLVLAD AA               LFEAET+H XXXXXX        GGRTFSP NGGG+GNG+ASS +K EVS+RRR NGQQ+RS+GW GWAPDARQHARKPRLSGDLPAGFIASP AALGQQRRG RTCG SSSGG SPLRSFGGG EA
Sbjct:    1 MAALFRAATWVLPLVLADVAAAAAAAPTGPSVETSRLFEAETHHRXXXXXXXXXXXXSGGGRTFSPANGGGNGNGIASSRNKHEVSIRRRSNGQQRRSSGWLGWAPDARQHARKPRLSGDLPAGFIASPAAALGQQRRGTRTCGGSSSGGDSPLRSFGGGREA 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6509.17304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUA9_ECTSI4.200e-6174.23CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6509contigEcto-sp13_S_contig6509:1494..2929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score211.5
Seed ortholog evalue3e-52
Seed eggNOG ortholog2880.D7FUA9
Model size558
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-03_000920.1
Cds size486
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.6931074-UTR-Ecto-sp13_S_contig6509:1493..15631681463897.6931074-UTR-Ecto-sp13_S_contig6509:1493..1563Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6509 1494..1563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.7080317-CDS-Ecto-sp13_S_contig6509:1563..15701681463897.7080317-CDS-Ecto-sp13_S_contig6509:1563..1570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6509 1564..1570 +
1681463897.71838-CDS-Ecto-sp13_S_contig6509:2450..29291681463897.71838-CDS-Ecto-sp13_S_contig6509:2450..2929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6509 2451..2929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6509.17304.1prot_Ecto-sp13_S_contig6509.17304.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6509 1564..2929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6509.17304.1

>prot_Ecto-sp13_S_contig6509.17304.1 ID=prot_Ecto-sp13_S_contig6509.17304.1|Name=mRNA_Ecto-sp13_S_contig6509.17304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
MAALFRAATWVLPLVLADAAAAAAAAPAGPSAETSRLFEAETYHRHHRRQ
RPSPTSPREGGRTFSPTNGGGSGNGVASSHDKDEVSVRRRYNGQQKRSTG
WFGWAPDARQHARKPRLSGDLPAGFIASPTAALGQQRRGARTCGSSSGGH
SPLRSFGGGTEA
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mRNA from alignment at Ecto-sp13_S_contig6509:1494..2929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6509.17304.1 ID=mRNA_Ecto-sp13_S_contig6509.17304.1|Name=mRNA_Ecto-sp13_S_contig6509.17304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1436bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6509:1494..2929+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGAGAGAGAGACGGAGAGAGAGAGAGAGCTTGGATTAAGGAAAGAAC
CTGATTCCTGAGGGAAGGCTATGGCTGGTGAGTACATGCGATCGTGCGTG
ACGCCCATATGGCCTTGCTTTGCTTGTAACCTCGTGGGACAATTGCTAAA
CCTGACAGTCCCGTGGGCCGACACGTAGCATATGCGGTTGACGTTCGCCG
TTCGCCACGCGCCGGCTTTCAGAGAGACAAGCCCCAATGCCTTCCGAGGA
GATAACTCTCCCAGCTACCCTACTACTGTGGTGTATATAGTATTGCTTTG
TAGCTCTCGTGTGTACGGCGGCATTGCTTTTGCCACCGTCCCACCAGCTC
GCGTTTCCGTTGTTGCTGTTGCTGTTGACCCAAAGCTGTCTCACGACTCA
CGACTCCCTCGAGACAGGAGACGACATATTTTAACTCTCAACGAAATAGA
ACATACTTGACGCCACCTGTAGATTGTCGTAGAGGGTTATTGACCGGACA
TGATCTCCTTTTGTGTTTTGCATCACAGGCTCCTAGAAAGCATGTGAACA
TACGATCAATCACTGAAACTCCCGTTTGAGAAGGCGTTATCTGCATAACA
TACATCCATTTCGATCACCGGAATGTGCTGGTGATTTCCCTATCCGCGGG
GGGGCAGTTTTCGGCCCGGTCGTCAGCAGTTGAGAGCATTGGCGTTCGCC
TCTAGTCTATGCAAATGCGCTGCAGTGTGTGGGAGAGAAGCTGTCGGTGT
GCTGATTGGACCTTCGCGCGCGTAGCAAGCCGCTTCTTCTTCAACAACAA
AAATATGTAGCAACGACTGAACACACATGCTCCGGAGACAGGGAACGACT
AAACCATGAGATAATGACTGTTGCCCGAGGAGCCGTGGAATTCGGGCAGC
AGTCACCCTTACATTCCCCCCCACCACCACCACCCCGGTGTTTCGTCTTC
CTCTCAGCGTTATTTCGAGCAGCAACATGGGTGCTCCCTCTGGTGCTAGC
AGACGCAGCGGCGGCAGCAGCAGCGGCTCCCGCCGGTCCCTCCGCTGAGA
CCTCCCGCCTCTTCGAAGCGGAAACCTACCACCGCCACCACCGACGACAG
AGACCATCACCGACGTCGCCACGCGAGGGCGGCCGAACTTTCTCTCCGAC
CAATGGCGGCGGAAGCGGCAATGGCGTAGCATCTTCGCACGACAAGGATG
AGGTATCCGTCCGGCGAAGATACAACGGCCAGCAGAAACGATCCACCGGC
TGGTTCGGTTGGGCACCCGACGCGAGACAGCACGCGAGAAAACCCCGCCT
TTCTGGAGATCTACCGGCCGGGTTCATCGCGAGCCCCACGGCTGCGCTCG
GACAGCAGAGACGAGGGGCGCGCACATGCGGCAGCAGCAGCGGCGGTCAC
TCTCCGTTGAGAAGTTTTGGAGGAGGCACGGAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6509:1494..2929+

>mRNA_Ecto-sp13_S_contig6509.17304.1 ID=mRNA_Ecto-sp13_S_contig6509.17304.1|Name=mRNA_Ecto-sp13_S_contig6509.17304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6509:1494..2929+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCGTTATTTCGAGCAGCAACATGGGTGCTCCCTCTGGTGCTAGC
AGACGCAGCGGCGGCAGCAGCAGCGGCTCCCGCCGGTCCCTCCGCTGAGA
CCTCCCGCCTCTTCGAAGCGGAAACCTACCACCGCCACCACCGACGACAG
AGACCATCACCGACGTCGCCACGCGAGGGCGGCCGAACTTTCTCTCCGAC
CAATGGCGGCGGAAGCGGCAATGGCGTAGCATCTTCGCACGACAAGGATG
AGGTATCCGTCCGGCGAAGATACAACGGCCAGCAGAAACGATCCACCGGC
TGGTTCGGTTGGGCACCCGACGCGAGACAGCACGCGAGAAAACCCCGCCT
TTCTGGAGATCTACCGGCCGGGTTCATCGCGAGCCCCACGGCTGCGCTCG
GACAGCAGAGACGAGGGGCGCGCACATGCGGCAGCAGCAGCGGCGGTCAC
TCTCCGTTGAGAAGTTTTGGAGGAGGCACGGAGGCG
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