mRNA_Ecto-sp13_S_contig6503.17297.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6503.17297.1
Unique NamemRNA_Ecto-sp13_S_contig6503.17297.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6503.17297.1 vs. uniprot
Match: A0A6H5KCF8_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF8_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 2.280e-150
Identity = 278/378 (73.54%), Postives = 292/378 (77.25%), Query Frame = 1 
Query:    1 QATVHIFGEEEEWKAALAEAVDPAVLPLDYGGTAPHLEYTPLLPAFHLALRRDNPARVRAAAAAAAA-----CHSGMREEREVEAVAPVECEGEVTARSMSALLRRFSLGDDGASCTLERRRSSSDGLSLEGDQAGGGDPVVFERDFDGSSGGSSESDGVDRAGXXXXXXXDTNRSAKRWGS-GNVVPKDVLKEVGGSGVTNEDNNGANNNIR--GAPSHRPVSSGGGGAPSNSYYPGMHVGAQVAATMVELPASDDPRAISXXXXXXXXXXXVVIVRQGHDNRDGSDTADRGWMAKEDEEEEEDRRGDLECVLDSIPGARLATTVAGTXXXATLTAALGVAGFTGGVMEAVVPAQAWAEGVHAFQSARFLGGWALGR 1110
            QATVHIFG E+EWKAALAEAVDPAVLPLDYGGTAPHL  TPLLPAFH AL RD PARV AA           CHSGM+E RE EA  PVECEG+VTARSMSALLRRFSLG DG SCTLER+ SSSDG SL GDQAGG  PVVFERD DG  GGSSES GVDRA         TNRSAK WG  G VVPKDV +EVGGSGVTNED++G N N    GAPSHRPVS  GGGAPSNSY   +H+GA+ AA+M+ELPASDDPRA + XXXXXXXXX V+IVRQ HD RDGSDTADRG M KED    EDRRG LECVLD IP ARLA TVA  XXX         AGFT GVMEAVVPAQAWAEGVHAFQSARFLGGWALGR
Sbjct:  329 QATVHIFGVEKEWKAALAEAVDPAVLPLDYGGTAPHLADTPLLPAFHRALGRDTPARVGAAXXXXXXXXXXXCHSGMQE-REGEAAVPVECEGDVTARSMSALLRRFSLGGDGDSCTLERQSSSSDGSSLGGDQAGGVGPVVFERDVDGGGGGSSESGGVDRA----DGGDGTNRSAKTWGKRGKVVPKDVPQEVGGSGVTNEDDDGTNKNSTRGGAPSHRPVS--GGGAPSNSYDSAVHLGARAAASMLELPASDDPRATASXXXXXXXXXHVIIVRQRHDKRDGSDTADRGRMGKEDXXXXEDRRGGLECVLDYIPSARLAATVAXXXXXXXXXXXXXXAGFTAGVMEAVVPAQAWAEGVHAFQSARFLGGWALGR 699
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BLAST of mRNA_Ecto-sp13_S_contig6503.17297.1 vs. uniprot
Match: D8LT57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT57_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 2.340e-114
Identity = 227/304 (74.67%), Postives = 235/304 (77.30%), Query Frame = 1 
Query:  214 MREEREVEAVAPVECEGEVTARSMSALLRRFSLGDDGASCTLERRRSSSDGLSLEGDQAGGGDPVVFERDFDGSSGGSSESDGVDRAGXXXXXXX--DTNRSAKRWGSG-NVVPKDVLKEVGGSGVTNEDNNGANNNIR--GAPSHRPVSSGGGGAPSNSYYPGMHVGAQVAATMVELPASDDPRAISXXXXXXXXXXXVVIVRQGHDNRDGSDTADRGWMAKEDEEEEEDRRGDLECVLDSIPGARLATTVAGTXXXATLTAALGVAGFTGGVMEAVVPAQAWAEGVHAFQSARFLGGWALGR 1110
            M+EERE EA  PVECEG VTARSMSALLRRFSLG DGASCTLERR SSSDG SLEGDQAG                            XXXXXXX  DTNRSAKRWG G NVVPKDV KEVGGSGVTNED+NGAN N R  GAPSHRPV SG  GAPSN Y   +H+GAQ AA+MVELPASDDP A SXXXXXXXXXXX  IVR+ HD RDGSDTADRG M +E  EEEEDRRGDLECV+DSIPG RL  TVAGT   ATLTAALGVAGFT GVMEAVVPAQAWAEGVHAFQSARFLGGWALGR
Sbjct:    1 MQEEREGEATVPVECEGNVTARSMSALLRRFSLGGDGASCTLERRSSSSDGCSLEGDQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDTNRSAKRWGEGGNVVPKDVPKEVGGSGVTNEDDNGANKNSRRGGAPSHRPVLSG--GAPSNPYDSAVHLGAQAAASMVELPASDDPWATSXXXXXXXXXXXXXIVRKRHDKRDGSDTADRGRMGRE--EEEEDRRGDLECVVDSIPGVRLVATVAGTVAGATLTAALGVAGFTVGVMEAVVPAQAWAEGVHAFQSARFLGGWALGR 300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6503.17297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCF8_9PHAE2.280e-15073.54CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LT57_ECTSI2.340e-11474.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6503contigEcto-sp13_S_contig6503:16..1190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1175
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-12_005330.1
Cds size900
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.0349658-UTR-Ecto-sp13_S_contig6503:15..2281681463897.0349658-UTR-Ecto-sp13_S_contig6503:15..228Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6503 16..228 +
1681463897.0580657-UTR-Ecto-sp13_S_contig6503:1128..11901681463897.0580657-UTR-Ecto-sp13_S_contig6503:1128..1190Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6503 1129..1190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.047363-CDS-Ecto-sp13_S_contig6503:228..11281681463897.047363-CDS-Ecto-sp13_S_contig6503:228..1128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6503 229..1128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6503.17297.1prot_Ecto-sp13_S_contig6503.17297.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6503 229..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6503.17297.1

>prot_Ecto-sp13_S_contig6503.17297.1 ID=prot_Ecto-sp13_S_contig6503.17297.1|Name=mRNA_Ecto-sp13_S_contig6503.17297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
MREEREVEAVAPVECEGEVTARSMSALLRRFSLGDDGASCTLERRRSSSD
GLSLEGDQAGGGDPVVFERDFDGSSGGSSESDGVDRAGGSGGGGGDTNRS
AKRWGSGNVVPKDVLKEVGGSGVTNEDNNGANNNIRGAPSHRPVSSGGGG
APSNSYYPGMHVGAQVAATMVELPASDDPRAISSSSSSSPSSSHVVIVRQ
GHDNRDGSDTADRGWMAKEDEEEEEDRRGDLECVLDSIPGARLATTVAGT
VAGATLTAALGVAGFTGGVMEAVVPAQAWAEGVHAFQSARFLGGWALGR*
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mRNA from alignment at Ecto-sp13_S_contig6503:16..1190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6503.17297.1 ID=mRNA_Ecto-sp13_S_contig6503.17297.1|Name=mRNA_Ecto-sp13_S_contig6503.17297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1175bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6503:16..1190+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCACCGTCCACATTTTCGGCGAGGAGGAGGAGTGGAAAGCAGCATT
GGCGGAAGCGGTCGATCCTGCCGTCCTGCCGTTGGACTACGGCGGCACCG
CCCCGCACCTAGAGTACACCCCTTTGCTCCCGGCCTTTCACCTCGCGCTT
CGGCGAGACAATCCGGCAAGGGTAAGGGCGGCGGCGGCGGCGGCGGCGGC
GTGTCACTCTGGGATGCGAGAAGAACGGGAGGTCGAAGCGGTAGCACCCG
TTGAATGCGAAGGGGAAGTGACCGCGAGATCGATGTCCGCTCTGTTGCGA
CGCTTCTCCCTGGGCGATGATGGCGCCAGCTGCACGCTCGAGCGCCGGCG
TAGCTCCTCTGACGGGTTAAGTCTCGAGGGCGACCAGGCCGGCGGCGGCG
ACCCCGTGGTATTCGAGCGTGATTTTGACGGTAGCAGCGGCGGGTCCTCC
GAGAGCGATGGAGTCGACAGAGCCGGTGGTAGTGGCGGTGGTGGTGGTGA
TACCAATAGATCAGCAAAGAGGTGGGGGAGCGGTAACGTTGTGCCCAAGG
ACGTACTGAAGGAAGTGGGTGGGAGTGGTGTGACAAACGAAGACAATAAC
GGCGCAAACAATAATATCAGGGGGGCACCATCGCACAGGCCGGTGTCGAG
CGGCGGCGGCGGCGCCCCAAGCAATTCCTACTACCCCGGAATGCATGTGG
GAGCTCAGGTGGCGGCAACCATGGTGGAGTTGCCAGCGAGCGATGACCCA
CGCGCTATCTCCTCGTCCTCCTCCTCTTCCCCCTCCTCCTCTCACGTGGT
CATCGTCCGGCAAGGACACGACAACCGCGACGGCAGTGATACCGCCGACC
GAGGATGGATGGCGAAGGAAGACGAAGAAGAAGAAGAAGACCGCCGTGGA
GACCTTGAGTGCGTCTTGGACTCCATCCCTGGCGCGCGCCTGGCCACGAC
GGTAGCCGGGACCGTCGCGGGCGCGACCCTCACGGCCGCTCTAGGCGTGG
CCGGGTTTACCGGGGGTGTCATGGAAGCCGTGGTTCCGGCTCAGGCGTGG
GCCGAGGGGGTACATGCCTTTCAGTCGGCACGGTTTTTGGGCGGCTGGGC
CCTCGGACGCTAGAGAGAACGCTTCGCAAGGGAGGGGGGCGGATGACATC
CGTGCAGACCCAGCGGGAGGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6503:16..1190+

>mRNA_Ecto-sp13_S_contig6503.17297.1 ID=mRNA_Ecto-sp13_S_contig6503.17297.1|Name=mRNA_Ecto-sp13_S_contig6503.17297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6503:16..1190+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGAAGAACGGGAGGTCGAAGCGGTAGCACCCGTTGAATGCGAAGG
GGAAGTGACCGCGAGATCGATGTCCGCTCTGTTGCGACGCTTCTCCCTGG
GCGATGATGGCGCCAGCTGCACGCTCGAGCGCCGGCGTAGCTCCTCTGAC
GGGTTAAGTCTCGAGGGCGACCAGGCCGGCGGCGGCGACCCCGTGGTATT
CGAGCGTGATTTTGACGGTAGCAGCGGCGGGTCCTCCGAGAGCGATGGAG
TCGACAGAGCCGGTGGTAGTGGCGGTGGTGGTGGTGATACCAATAGATCA
GCAAAGAGGTGGGGGAGCGGTAACGTTGTGCCCAAGGACGTACTGAAGGA
AGTGGGTGGGAGTGGTGTGACAAACGAAGACAATAACGGCGCAAACAATA
ATATCAGGGGGGCACCATCGCACAGGCCGGTGTCGAGCGGCGGCGGCGGC
GCCCCAAGCAATTCCTACTACCCCGGAATGCATGTGGGAGCTCAGGTGGC
GGCAACCATGGTGGAGTTGCCAGCGAGCGATGACCCACGCGCTATCTCCT
CGTCCTCCTCCTCTTCCCCCTCCTCCTCTCACGTGGTCATCGTCCGGCAA
GGACACGACAACCGCGACGGCAGTGATACCGCCGACCGAGGATGGATGGC
GAAGGAAGACGAAGAAGAAGAAGAAGACCGCCGTGGAGACCTTGAGTGCG
TCTTGGACTCCATCCCTGGCGCGCGCCTGGCCACGACGGTAGCCGGGACC
GTCGCGGGCGCGACCCTCACGGCCGCTCTAGGCGTGGCCGGGTTTACCGG
GGGTGTCATGGAAGCCGTGGTTCCGGCTCAGGCGTGGGCCGAGGGGGTAC
ATGCCTTTCAGTCGGCACGGTTTTTGGGCGGCTGGGCCCTCGGACGCTAG
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