mRNA_Ecto-sp13_S_contig6499.17288.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6499.17288.1
Unique NamemRNA_Ecto-sp13_S_contig6499.17288.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6499.17288.1 vs. uniprot
Match: A0A6H5KFI7_9PHAE (Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.070e-23
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 VPTGEIMPVLGTPFDFTEGASLGAAIDGVEGNPRGVDNCLVRVGTSDDGRAAVRS 165
            VPTGEIMPVLGTPFDFT+GASLGAAIDGV GNP GVDNCLVRVGTSD GRAA  S
Sbjct:  235 VPTGEIMPVLGTPFDFTQGASLGAAIDGVGGNPPGVDNCLVRVGTSDGGRAAATS 289
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6499.17288.1 vs. uniprot
Match: D7FXP5_ECTSI (Aldose 1-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 8.950e-23
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 VPTGEIMPVLGTPFDFTEGASLGAAIDGVEGNPRGVDNCLVRVGTSDDGRAA 156
            VPTGEIMPVLGTPFDFTEGASLGAAIDGV GNP GVDNCLVRVGTSD G+AA
Sbjct:  284 VPTGEIMPVLGTPFDFTEGASLGAAIDGVGGNPPGVDNCLVRVGTSDGGQAA 335
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6499.17288.1 vs. uniprot
Match: A0A845U7G5_9BACT (Aldose 1-epimerase n=1 Tax=Acidipila sp. TaxID=1872113 RepID=A0A845U7G5_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 4.800e-6
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 VPTGEIMPVLGTPFDFTEGASLGAAIDGVEGNPRGVDNCLVRVGTSDDGRAAVRSACCLSGR 186
            +PTGEI PV GTPFDFT   ++GA I  V G+P G D+  V  G +   + A R +   SGR
Sbjct:  236 IPTGEIAPVRGTPFDFTAATAIGARISQVAGDPGGYDHNFVLNGPAGRLKLAARVSEPTSGR 297
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6499.17288.1 vs. uniprot
Match: UPI0009318CCE (galactose mutarotase n=1 Tax=Collinsella phocaeensis TaxID=1871016 RepID=UPI0009318CCE)

HSP 1 Score: 50.4 bits (119), Expect = 1.220e-5
Identity = 33/67 (49.25%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 VPTGEIMPVLGTPFDFTEGASLGAAIDGVEGNPR---GVDNCLVRVGTSDDG--RAAVRSACCLSGR 186
            +PTGEI PV GTPFDFT  ASLGA ID  +   R   G D+C    G    G  R A+R+    SGR
Sbjct:  210 IPTGEIAPVAGTPFDFTAPASLGARIDADDEQIRFGAGYDHCFCIDGYRSSGLLRRALRAEDMASGR 276
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6499.17288.1 vs. uniprot
Match: A0A3C1QXL9_9PLAN (Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C1QXL9_9PLAN)

HSP 1 Score: 48.9 bits (115), Expect = 4.310e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VPTGEIMPVLGTPFDFTEGASLGAAIDGVEGNPRGVDNCLV 123
            +PTGE +PV GTPFDFT+  ++G  I+ V G+P G D+C V
Sbjct:  243 IPTGEQIPVGGTPFDFTDFHAIGERIEAVGGDPIGYDHCYV 283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6499.17288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KFI7_9PHAE4.070e-2389.09Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D7FXP5_ECTSI8.950e-2392.31Aldose 1-epimerase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A845U7G5_9BACT4.800e-646.77Aldose 1-epimerase n=1 Tax=Acidipila sp. TaxID=187... [more]
UPI0009318CCE1.220e-549.25galactose mutarotase n=1 Tax=Collinsella phocaeens... [more]
A0A3C1QXL9_9PLAN4.310e-553.66Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacte... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6499contigEcto-sp13_S_contig6499:7872..8057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score84.7
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D7FXP5
Model size186
KEGG rclassRC00563
KEGG koko:K01785
KEGG ReactionR01602,R10619
KEGG Pathwayko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130
KEGG ModuleM00632
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.aldose 1-epimerase activity
EggNOG OGsCOG2017@1,KOG1604@2759
EC5.1.3.3
Cds size168
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.3796244-CDS-Ecto-sp13_S_contig6499:7871..80391681463896.3796244-CDS-Ecto-sp13_S_contig6499:7871..8039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6499 7872..8039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.4007757-UTR-Ecto-sp13_S_contig6499:8039..80571681463896.4007757-UTR-Ecto-sp13_S_contig6499:8039..8057Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6499 8040..8057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6499.17288.1prot_Ecto-sp13_S_contig6499.17288.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6499 7872..8039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6499.17288.1

>prot_Ecto-sp13_S_contig6499.17288.1 ID=prot_Ecto-sp13_S_contig6499.17288.1|Name=mRNA_Ecto-sp13_S_contig6499.17288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MPVLGTPFDFTEGASLGAAIDGVEGNPRGVDNCLVRVGTSDDGRAAVRSA
CCLSGR
back to top

mRNA from alignment at Ecto-sp13_S_contig6499:7872..8057-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6499.17288.1 ID=mRNA_Ecto-sp13_S_contig6499.17288.1|Name=mRNA_Ecto-sp13_S_contig6499.17288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6499:7872..8057- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCCGACCGGAGAGATCATGCCGGTGCTTGGAACACCCTTCGATTTCAC
CGAGGGGGCGTCGCTCGGCGCCGCCATCGATGGCGTCGAGGGAAACCCCC
GGGGTGTGGACAATTGCTTGGTGCGAGTCGGAACTTCTGACGACGGCCGA
GCTGCGGTACGTTCCGCATGCTGTCTTTCGGGCCGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6499:7872..8057-

>mRNA_Ecto-sp13_S_contig6499.17288.1 ID=mRNA_Ecto-sp13_S_contig6499.17288.1|Name=mRNA_Ecto-sp13_S_contig6499.17288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6499:7872..8057- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGTGCTTGGAACACCCTTCGATTTCACCGAGGGGGCGTCGCTCGG
CGCCGCCATCGATGGCGTCGAGGGAAACCCCCGGGGTGTGGACAATTGCT
TGGTGCGAGTCGGAACTTCTGACGACGGCCGAGCTGCGGTACGTTCCGCA
TGCTGTCTTTCGGGCCGT
back to top