mRNA_Ecto-sp13_S_contig6490.17275.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6490.17275.1 vs. uniprot
Match: D8LLY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY1_ECTSI) HSP 1 Score: 619 bits (1596), Expect = 3.210e-217 Identity = 403/531 (75.89%), Postives = 413/531 (77.78%), Query Frame = 1
Query: 1 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQLLAACRAAPRDKENVFPIRAAAXXXXXXXXXXXXXXXX------------------------STTWKGVGVEADGVPPRVTLRKRRGDHGGTNGTSVSGMGNGGGGEDANEPASSVSSEAISSATAGGEREGDRQSRERENDGDAEESQFCGLLLREQPTSANDKVPGEDIEGGQGRGEHHFDGRMDESSYDFSENVESFRGAGEDPIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNENTALVEQAGVYDRSYEGEEEDGSRREERDRFSRHAGANDNPYDGXXXXXXXXXXXXXXXXXXXXXXX--GGGVEKEPRSSVDGGGASGVGEWNEDYYEDXXXXXXXXXXXXXXXXXXXXXXXXSAADVAAKVAANAGDEEVEEEALLAEGDGTHQDGLFDAEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 1515
AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGA VG GE KTPEGK SPVMLQLLAACRAAPRDKEN FP+ AAA STTW+GVGVE DGVPPRVTLRKRRGDHGGTNGTSV GMGNG GGEDANEPASSVSSE ISSATAG REGDRQSRERE+DGDAEES+F GLLLR+QPT+A+DK GED GGQGR EHHFDGRMDE SYDFSENVES RG GEDPIVAA XXX XXXXXXXXX VT ENTA+VEQAGVYDRSYEGEE+DG RREE DRFSRHAGAND+PY G G GVEKEPRSSVDGG ASGV EWNEDYYED XXXXXXXXXXXXXXXXXXXXX SAADVAAKVAANAGD EVEEEALL GDGTHQDGLFD EGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI
Sbjct: 3 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATAGDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAG-VREGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWEHHFDGRMDEDSYDFSENVESVRGGGEDPIVAAAASGVDGDGXXXESISXXXXXXXXX-----VTTENTAIVEQAGVYDRSYEGEEDDGHRREEGDRFSRHAGANDSPYGGGGGGDGALRNGNGDSLAGFGGSSDNGVGVEKEPRSSVDGGVASGVDEWNEDYYEDDDXXXXXXXXXXXXXXXXXXXXXNSAADVAAKVAANAGDGEVEEEALLTGGDGTHQDGLFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 527
BLAST of mRNA_Ecto-sp13_S_contig6490.17275.1 vs. uniprot
Match: A0A6H5JFJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ8_9PHAE) HSP 1 Score: 599 bits (1545), Expect = 8.240e-209 Identity = 394/521 (75.62%), Postives = 413/521 (79.27%), Query Frame = 1
Query: 4 GRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQLLAACRAAPRDKENVFPIRAAAXXXXXXXXXXXXXXXXS-----------------TTWKGVGVEADGVPPRVTLRKRRGDHGGTNGTSVSGMGNGGGGEDANEPASSVSSEAISSATAGGEREGDRQSRERENDGDAEESQFCGLLLREQPTSANDKVPGEDIEGGQGRGEHHFDGRMDESSYDFSENVESFRGAGEDPIVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNENTALVEQAGVYDRSYEGEEEDGSRREERDRFSRHAGANDNPYDGXXXXXXXXXXXXXXXXXXXXXXXGGGVEKEPRSSVDGGGASGVGEWNEDYYEDXXXXXXXXXXXXXXXXXXXXXXXXSAADVAAKVAANAGDEEVEEEALLAEGDGTHQDGLFDAEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 1515
GRL+LQVVADFLEHWELHQTLSVLKLETDMATED LSTEELGSIVANGAAVG GETKTP+GKPSPVMLQLLAACRAAPRD+EN P+ AAA TTW+GVGVE DGVPPRVTLRKRRGDHGGT+GTSVSGMGNG GGEDANEPA SV SE +SSATAG EREGDRQSRERENDGDAEES+F GLLLREQPT+A+D GED GGQ R EHHFDGRMDESSYDFSENVES +GAGEDP+VAAXXXXXXXXXXXXXXXXXXXXXXXXXXX VT+EN ALVEQAGVYDRS EG+E+DG RREE DRFS+HAGAN++ XXXX GGGVEKEPRSSVDGG ASGV EWNEDYYED XXXXX X SAADVAAKVAANAGD EVE+EALLAEG GTHQDG FD EGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI
Sbjct: 61 GRLALQVVADFLEHWELHQTLSVLKLETDMATEDFLSTEELGSIVANGAAVGKGETKTPDGKPSPVMLQLLAACRAAPRDRENGLPLGAAAADRSERLIGEDKGRKEEEGRQEAEEGEEDGGRRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGTSGTSVSGMGNGSGGEDANEPAWSVPSEPVSSATAG-EREGDRQSRERENDGDAEESRFGGLLLREQPTAADDIYRGEDKSGGQDRWEHHFDGRMDESSYDFSENVESVKGAGEDPMVAAXXXXXXXXXXXXXXXXXXXXXXXXXXX---VTSENAALVEQAGVYDRSCEGKEDDGPRREEGDRFSKHAGANNSYGXXXXXXVLRNGNGDSLAGFGGSSDNGGGVEKEPRSSVDGGVASGVDEWNEDYYEDDDFDGXXXXXIXNDDGDI------SAADVAAKVAANAGDGEVEDEALLAEGGGTHQDGFFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 571
BLAST of mRNA_Ecto-sp13_S_contig6490.17275.1 vs. uniprot
Match: D7FK22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK22_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.680e-33 Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1
Query: 1 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQ 210
AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGA VG GE KTPEGK SPVMLQ
Sbjct: 3 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQ 72 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6490.17275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6490.17275.1 >prot_Ecto-sp13_S_contig6490.17275.1 ID=prot_Ecto-sp13_S_contig6490.17275.1|Name=mRNA_Ecto-sp13_S_contig6490.17275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=507bp AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAback to top mRNA from alignment at Ecto-sp13_S_contig6490:540..3658- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6490.17275.1 ID=mRNA_Ecto-sp13_S_contig6490.17275.1|Name=mRNA_Ecto-sp13_S_contig6490.17275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6490:540..3658- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6490:540..3658- >mRNA_Ecto-sp13_S_contig6490.17275.1 ID=mRNA_Ecto-sp13_S_contig6490.17275.1|Name=mRNA_Ecto-sp13_S_contig6490.17275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1521bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6490:540..3658- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |