mRNA_Ecto-sp13_S_contig6485.17270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6485.17270.1
Unique NamemRNA_Ecto-sp13_S_contig6485.17270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6485.17270.1 vs. uniprot
Match: D8LNN6_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN6_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 1.740e-169
Identity = 435/464 (93.75%), Postives = 439/464 (94.61%), Query Frame = 2 
Query:   98 MDSGDLLGVAILTKSEDDVRRMIGKPGFRRHSLNQVLRSGGHTPLALATSAGRLGMVKLLIEAGADPLAYCDGDNCIHVAARYGHPKIVSELIRRGISVEVSTLDQRRPLFIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQESHMEAAVLLTNYRPSAVRRPPDSLHLCVLRNDMGGARDLLDRGAPPDHADRDGVTPLQSAVLIASPRMVEVMLRGGADESAALPAARAGGKAGVTPLALSSARLSGRRQECADARVARARVRVRDALLRVGAVRAGCWRWPELLEVRPAASGEGAATRSAFSSAGRAVQGKNGVGSGDGLGASSGRGRIPGVGLLRLGNRDRSTRAALMTTTALNR 1489
            MDSGDLLGVAILTKSEDDVRRMIGKPGFRRHSLNQVLRSG HTPL LATSAGRLGMVKLLI+AGADPLAYCDGDNCIHVAARYGHPKIVSELIRRG+SVEVSTLDQRRPLFIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     MEAAVLLT YRPS VRRPPDSLHLCVLRND G ARDLL RGAPPDHADRDGVTPLQSAVLIASPRMVEVMLRGGADESAALPAARAGGKAGVTPLALSSARLSGRRQECADARVARARVRVRDALLRVGAVRAGCWRWPELLEV P ASGE  AT SA SSAGRAVQGK GVGSGDGLGAS GRGR+PG GL+RLGNRDRS R ALMT  ALNR
Sbjct:    1 MDSGDLLGVAILTKSEDDVRRMIGKPGFRRHSLNQVLRSGDHTPLGLATSAGRLGMVKLLIDAGADPLAYCDGDNCIHVAARYGHPKIVSELIRRGVSVEVSTLDQRRPLFIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEAAVLLTTYRPSPVRRPPDSLHLCVLRNDFGAARDLLSRGAPPDHADRDGVTPLQSAVLIASPRMVEVMLRGGADESAALPAARAGGKAGVTPLALSSARLSGRRQECADARVARARVRVRDALLRVGAVRAGCWRWPELLEVLPVASGEEVATGSALSSAGRAVQGKKGVGSGDGLGASLGRGRVPGAGLVRLGNRDRSKRVALMTKAALNR 464
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6485.17270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNN6_ECTSI1.740e-16993.75Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6485contigEcto-sp13_S_contig6485:2959..7814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score524.6
Seed ortholog evalue4.7e-146
Seed eggNOG ortholog2880.D8LNN6
Model size3521
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_006440.1
Cds size1434
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6485.17270.1prot_Ecto-sp13_S_contig6485.17270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6485 3056..5824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.1077914-UTR-Ecto-sp13_S_contig6485:2958..30551681463895.1077914-UTR-Ecto-sp13_S_contig6485:2958..3055Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6485 2959..3055 +
1681463895.1774786-UTR-Ecto-sp13_S_contig6485:5824..78141681463895.1774786-UTR-Ecto-sp13_S_contig6485:5824..7814Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6485 5825..7814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.1215463-CDS-Ecto-sp13_S_contig6485:3055..33011681463895.1215463-CDS-Ecto-sp13_S_contig6485:3055..3301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6485 3056..3301 +
1681463895.1322346-CDS-Ecto-sp13_S_contig6485:3788..39701681463895.1322346-CDS-Ecto-sp13_S_contig6485:3788..3970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6485 3789..3970 +
1681463895.1431985-CDS-Ecto-sp13_S_contig6485:4372..53351681463895.1431985-CDS-Ecto-sp13_S_contig6485:4372..5335Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6485 4373..5335 +
1681463895.1626992-CDS-Ecto-sp13_S_contig6485:5781..58241681463895.1626992-CDS-Ecto-sp13_S_contig6485:5781..5824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6485 5782..5824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6485.17270.1

>prot_Ecto-sp13_S_contig6485.17270.1 ID=prot_Ecto-sp13_S_contig6485.17270.1|Name=mRNA_Ecto-sp13_S_contig6485.17270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=478bp
MDSGDLLGVAILTKSEDDVRRMIGKPGFRRHSLNQVLRSGGHTPLALATS
AGRLGMVKLLIEAGADPLAYCDGDNCIHVAARYGHPKIVSELIRRGISVE
VSTLDQRRPLFIAAQQSSVETVQVLIEAGADIEFRHEGFFTALFMAAQSG
RTGVAIELIKSGAYMGPQGRHSWTPLMQSAHRGYLEIAEALLEHQCPPDS
RNEQGCTALHLAASANQAGLMKLLLDYGADRDLETVEGATPLQWAVQESH
MEAAVLLTNYRPSAVRRPPDSLHLCVLRNDMGGARDLLDRGAPPDHADRD
GVTPLQSAVLIASPRMVEVMLRGGADESAALPAARAGGKAGVTPLALSSA
RLSGRRQECADARVARARVRVRDALLRVGAVRAGCWRWPELLEVRPAASG
EGAATRSAFSSAGRAVQGKNGVGSGDGLGASSGRGRIPGVGLLRLGNRDR
STRAALMTTTALNRYVSRSVCKQDLER*
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mRNA from alignment at Ecto-sp13_S_contig6485:2959..7814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6485.17270.1 ID=mRNA_Ecto-sp13_S_contig6485.17270.1|Name=mRNA_Ecto-sp13_S_contig6485.17270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6485:2959..7814+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTAAAAAACCCGCGAAGCATCGCTCAGGTGTCTCTCGGCTTGTCTCG
CATTACCGAATCTCTCGGCCAACCACGAGACAGAACGGCGCGTCAGCATG
GACAGCGGCGATTTGCTGGGCGTCGCCATCCTCACCAAGTCCGAGGATGA
CGTTCGGCGGATGATCGGGAAACCCGGCTTCAGGCGCCACAGCTTGAACC
AAGTCCTGCGGTCGGGCGGCCACACCCCTCTCGCGTTGGCCACGTCCGCC
GGGCGCCTGGGCATGGTCAAACTCCTGATCGAAGCAGGAGCGGATCCGCT
GGCCTACTGCGATGGAGACAACTGCATCCATGTAGCCGCTAGGGTACGAG
GTGTTCCTTTCATATTATCACGCCAAAAGCTTCGTGGAGACAGAGTCTCC
TGTTGTGTACGGTAGCCTCGCGTGGGAGGGAGGGGCACCATCGACACATG
GGTGTAGTAGTACGGTACGTTGCGTACGATGGCACACCCCCTGGACCGAT
TTCAAAGGTCTATTTATCGGCAAGTATAACGGTGAAAGTGCGGTAAAACG
TCGGCGTTAGAAGAAAAAAACTTCAAGAGCTTTCTAAAAACGGTACTTTT
TTTTCGGTATCCTCTTCGTCTTGGAGCTTTGACAATCGGTCCAGTGGTTA
GGTGTGGAATCTTGAGCAAACTTAGGGTAGTCCATGTGCAGTCCGGCACG
TGACTATGACTCGTTGTCGTCGTCTGTCGCTGTTGTCAGGCGATAGTGCG
CCAGGTGGCCAACGTCACCCTCTACCTGCGATGATTCCCACCATTTACGC
ATGCCACGCCCCTCGTGATTGTTTCGTCAGTACGGACACCCGAAGATCGT
GTCGGAGCTGATCAGGAGAGGGATCAGCGTAGAGGTTAGTACGTTGGACC
AGCGTCGGCCCCTCTTCATCGCGGCGCAGCAGAGTTCCGTCGAGACTGTT
CAGGTGTTGATTGAGGCAGGAGCGGACATCGAGTTTCGGCACGAGGGCTT
CTTCACCGCCCTGTGAGTATCCTTTGTTTATTTGTTTGTTTGTTTTTGTC
TTACAACGACACAACGAACAAGTCCCTGTCGTTATCGATGACTTAGCTAC
AGCCGTGTCACATCACCCACCTGTGCACGTGTTTCTACTCTCACGTGTTG
CCTAATCCCTGTGACAAAAGGTCAGGTTGCAACAGCTCCTGTCGCTATGC
TTGCCTCGCTCCTGTCACCCTTTTCCGCCTCCCTTGTTCCCGTTCCGATA
CACGCGAAGCGCAACCAAGGGCCGCGAGGAACACGCGTCGGGTCGATCGA
GTCGTACATCAAGTTTTTCTTGCTCGTCATGAGCGTGGAGACCAAATGCG
TTCATTTGCCCGATTTGTGATATGGTGACCCCCCCCCCATCCCGCCCCCT
TCCGCCCACGCTAGGTTCATGGCCGCCCAGTCAGGACGAACCGGCGTTGC
CATCGAGCTCATCAAGAGCGGCGCATACATGGGGCCCCAGGGGAGGCACA
GCTGGACCCCCCTCATGCAGAGCGCCCACAGGGGCTATCTGGAGATCGCT
GAGGCTCTCCTCGAGCACCAATGTCCCCCGGACTCGCGCAACGAGCAGGG
CTGCACCGCCCTCCACCTCGCCGCCTCCGCCAACCAGGCCGGCCTCATGA
AGCTCCTGCTCGACTACGGCGCGGACCGCGACCTGGAGACGGTCGAGGGG
GCCACGCCGCTGCAGTGGGCGGTCCAAGAGAGCCACATGGAGGCGGCCGT
TCTCCTGACAAACTACAGGCCGTCCGCCGTGCGGCGGCCCCCGGACAGCC
TGCACCTCTGCGTGCTCCGAAACGACATGGGGGGCGCGCGGGACCTGCTC
GACAGAGGAGCTCCGCCGGATCACGCCGACAGAGACGGGGTCACCCCCCT
CCAGAGCGCGGTCCTCATCGCATCGCCGAGGATGGTCGAGGTCATGCTGC
GCGGGGGCGCCGACGAATCGGCAGCGCTGCCCGCGGCCCGCGCGGGGGGC
AAGGCCGGCGTGACCCCGCTAGCCCTGTCCTCAGCGAGACTGTCGGGACG
ACGGCAGGAGTGCGCCGACGCCCGCGTCGCGAGGGCCAGGGTGCGCGTGC
GGGACGCCCTGTTGAGGGTGGGCGCGGTTCGCGCGGGGTGTTGGCGGTGG
CCGGAGCTGCTGGAGGTGCGGCCCGCAGCGAGCGGTGAAGGGGCGGCGAC
GAGGAGCGCGTTTTCGTCGGCGGGACGAGCGGTACAGGGAAAAAATGGGG
TCGGTTCCGGTGATGGTTTGGGGGCGTCTTCGGGCAGGGGGAGAATACCG
GGCGTTGGGCTGCTGCGGCTCGGGAATCGTGACAGAAGCACGAGAGCAGC
GCTCATGACGACGACGGCGTTGAACAGGTGAGCCTTTTCTGTGTCCCATG
TTACGATGTCGTTGATTGCTTCGCGGGCTTGCACTTGTGCTCTGCCTTTC
TTTTCAATTGTGTTTCGATCGTTCATGCACCCTTCTCAGCTTTGTTGGTT
GTTTTGTGGTCGATATGTTGCACCCTCACCGCTTTGGCCAGGCACGGGCT
TGCAGACGCTCTAACTTGTCACGAACCCTGCGCAACCTTCCTCCTGTGAT
GCTTTTGTGCTTCAAGAAAACATTCGCGCGGACAGTGCTACTAGTCAGTA
CACACACACGACACAAGACACAACTTGCATGCAATTTGCTTGCGTGGGCG
CGAGAGAGGGACGCCAACCGCATCCCCCTGCGTGAAATAAAGTGTGTGCA
TGACAGGGAATTGCGTCATGATGACAGACTTGTTTTGCCCCTTGCGGTAT
GTCCTTTGCTTCCGTTCTACCAGATACGTATCTAGGTCCGTGTGCAAGCA
AGACTTGGAGCGATGAAGCGCGCTCGCACCCCTTGTCCGGGGACGGGTAC
AAGTAGCCCCGATCAGCGTCCCGGAGGCGAAAGCCGTTAAACCATGAGCG
TGGCGGGGTGTGGGGCAAGCGAGGGCCAGCCCTGCAAACACCGAATTTCT
TCGTGTTTGCGCAGGATAGGTGAGGGCGTGTCGAAGCTAGCGCCACCGTT
GCTGATCGAAAGCTGTAACCTGAACAATTTTCGAAGAGGATGGCGGCAGG
TGGGTTCTTGTTTTGGTGCCATTGCGGGCCTTGGAGCTTGGGGGGCAACG
CGTTAGGTGGCCGCGCTTTTTGTCTGTGAGGGTTCGCTCTATCCCTGTAA
TCGCTAGCTGCTGATCAAGCTCCCTCGCCAATTCCACCGGCCACAACGAC
GCACAACGTCCACCAAACCAAAGCGTGTATCGCAAGCGTGGGTCTCACGG
CTGAACCGCATATCTCTACATCTTTGCTACTTTGAGGCTGTCGATCGGCC
GGTGGTTATGCTGTGCATCTGTTGTTCCTTTCGACTCCGCTGGCTGTGAT
ATTCTGTAGATGCACGCGACAGTGCCAAGTATTTCATGCATTAAATGATG
AGGTATCCTTTCTTGTCTAAGTGAGTATTAAGGATGTCGATTGTGTTGAC
TAAATCGGTGGCGATTGTCTTGTGCCGTGCGTAATTAGGATTAAGCTGTA
CCATATGTAGCCCACGCGAACGACGTTGGCGTGGAAGCATGCTGGAACAT
GATCGCTCAAAAAGCCGCAGCACCACCCGAATGACGACCGTAGTCGATTG
TTGTGGGTTTCGAATGCGTCGAATGTTTGCAGGGGGGTTCTCGTCCCGCC
AGTTGCAGGAATCTCGTAGAATTCGATGCGTAATCCATGTCCGAGCCATG
ACTTCCTGGTCTTCGGGCGGTTTCGTATGCCTGTGTCTCTAAGAGTTTGC
GGTTGTATCTCTATTTGCGGTAACAGTGCCGTTTTTTGCTGTGTTGCGTT
GTGGCGGTTGCCACTGCTGTAGTACCGCGGTATTTTTCTACTGTTGTTCG
TGCTATTGGATCATATGCGCGGACTATACAAGTAGGGGTACCGCAACATG
TTTTGTCGGGGGGGCTGCTTTCGGGAACAACGGCACAACCGGATATTATG
TCTGCATTCCATGGTAGCAATGCTCGACGGTTTCGTCGATCCCCAGGCCG
TGCTGCATACAGTTGCAGGCTATTAGCGCTGCAGACGATGTGCTTTTATC
GTTCCAGTTGAGGCGTAACGCGAACCGAGGAGGAGTGGTTGTTTAGGAAG
GAAAGAAGGATGTTCTATGGTGATGCGTCATTTGCGGACTTGACAGCAAG
TTGTGTTGCGTTAGTTTTTGGATGATCGTTTGCACGCGAGGAAGTGGAGG
ACGCAGCAGATTTGAATGTGGAGGCCTCGGCGAGGGGAAGGAAGGAACCG
GGGTACCCTTTGGTGTGACACCGGCTGACATGGCCTCTCTAGCAAGAGCT
TTGAAGACTGGCTCGAGCAGATTCAAGGAGAAAAGAATACCGTTGTCAGC
CGAGCGTATTTCTAGCCCAAGATGTTCCTATCATCTTCAGAATAGTAACA
CCCAGTCCTGTCGAGGGGGGTAGATGTGTATGTGGACGGTCCGCGACAAG
ATCGACGTTTTCGCGGCTCGCACCACTTTCTATCCATCCATGTGTTCGTA
GCCCGCACTCACTCCTACATGAGACCAGTAGCCTTACCTTCAGCGTATTG
GGTCAATCGTACCTGAAGAAAGGATGCTTGCTCGCAACAATACTTTGCTA
GCTCGTAACATGGCACCTGTCATCTCTCTTTTATGACTCGCATTCTCAAG
CAGCAACCCTTGCGCGTTGTTCATGTACTTAGACGTTGAAAGACCCCCCG
CCCACAACAGTGGGCAGCGGAGCCCGAATCGCAAGGAAAAGGAGGGTGGG
AGTGCAAATGTACGGAGAGGTAGAGAGAGATGAGGGGCAGGGCGACACGA
AGAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6485:2959..7814+

>mRNA_Ecto-sp13_S_contig6485.17270.1 ID=mRNA_Ecto-sp13_S_contig6485.17270.1|Name=mRNA_Ecto-sp13_S_contig6485.17270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6485:2959..7814+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAGCGGCGATTTGCTGGGCGTCGCCATCCTCACCAAGTCCGAGGA
TGACGTTCGGCGGATGATCGGGAAACCCGGCTTCAGGCGCCACAGCTTGA
ACCAAGTCCTGCGGTCGGGCGGCCACACCCCTCTCGCGTTGGCCACGTCC
GCCGGGCGCCTGGGCATGGTCAAACTCCTGATCGAAGCAGGAGCGGATCC
GCTGGCCTACTGCGATGGAGACAACTGCATCCATGTAGCCGCTAGGTACG
GACACCCGAAGATCGTGTCGGAGCTGATCAGGAGAGGGATCAGCGTAGAG
GTTAGTACGTTGGACCAGCGTCGGCCCCTCTTCATCGCGGCGCAGCAGAG
TTCCGTCGAGACTGTTCAGGTGTTGATTGAGGCAGGAGCGGACATCGAGT
TTCGGCACGAGGGCTTCTTCACCGCCCTGTTCATGGCCGCCCAGTCAGGA
CGAACCGGCGTTGCCATCGAGCTCATCAAGAGCGGCGCATACATGGGGCC
CCAGGGGAGGCACAGCTGGACCCCCCTCATGCAGAGCGCCCACAGGGGCT
ATCTGGAGATCGCTGAGGCTCTCCTCGAGCACCAATGTCCCCCGGACTCG
CGCAACGAGCAGGGCTGCACCGCCCTCCACCTCGCCGCCTCCGCCAACCA
GGCCGGCCTCATGAAGCTCCTGCTCGACTACGGCGCGGACCGCGACCTGG
AGACGGTCGAGGGGGCCACGCCGCTGCAGTGGGCGGTCCAAGAGAGCCAC
ATGGAGGCGGCCGTTCTCCTGACAAACTACAGGCCGTCCGCCGTGCGGCG
GCCCCCGGACAGCCTGCACCTCTGCGTGCTCCGAAACGACATGGGGGGCG
CGCGGGACCTGCTCGACAGAGGAGCTCCGCCGGATCACGCCGACAGAGAC
GGGGTCACCCCCCTCCAGAGCGCGGTCCTCATCGCATCGCCGAGGATGGT
CGAGGTCATGCTGCGCGGGGGCGCCGACGAATCGGCAGCGCTGCCCGCGG
CCCGCGCGGGGGGCAAGGCCGGCGTGACCCCGCTAGCCCTGTCCTCAGCG
AGACTGTCGGGACGACGGCAGGAGTGCGCCGACGCCCGCGTCGCGAGGGC
CAGGGTGCGCGTGCGGGACGCCCTGTTGAGGGTGGGCGCGGTTCGCGCGG
GGTGTTGGCGGTGGCCGGAGCTGCTGGAGGTGCGGCCCGCAGCGAGCGGT
GAAGGGGCGGCGACGAGGAGCGCGTTTTCGTCGGCGGGACGAGCGGTACA
GGGAAAAAATGGGGTCGGTTCCGGTGATGGTTTGGGGGCGTCTTCGGGCA
GGGGGAGAATACCGGGCGTTGGGCTGCTGCGGCTCGGGAATCGTGACAGA
AGCACGAGAGCAGCGCTCATGACGACGACGGCGTTGAACAGATACGTATC
TAGGTCCGTGTGCAAGCAAGACTTGGAGCGATGA
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