mRNA_Ecto-sp13_S_contig6476.17259.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D7G247_ECTSI (NB-ARC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G247_ECTSI) HSP 1 Score: 134 bits (337), Expect = 1.710e-38 Identity = 70/118 (59.32%), Postives = 85/118 (72.03%), Query Frame = 1
Query: 4 IAELASRVKIPPGAPRVRDWYAEREGVVSEAC--------GRFGIGRSGNAFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMICLAGMVYETVM 333
+A+LASRVKIP G PRVRDWY +R V+ AC R R+ +A + + GLAGP GAGKSTVASM+I R+DVRASFHKG+LWL VGQGAKDRLP M+ LAGMV++T +
Sbjct: 1 MADLASRVKIPSGTPRVRDWYVQRRAEVAHACDHLEITSSSRDSFERNNSAENQRVVFGLAGPGGAGKSTVASMVITREDVRASFHKGVLWLPVGQGAKDRLPSPMLDLAGMVHKTAL 118
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE) HSP 1 Score: 128 bits (322), Expect = 3.130e-32 Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1
Query: 7 AELASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFGE-PRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMICLAGMVYETVM 333
++ A V +P GAPR+ +W+ ER+ V+EAC GIG + F E PR+VG++GP G+GKST+ASM+IAR+DVR F+KG+LWL VG+GAK LPELM+ LA MVYETV+
Sbjct: 116 SQSAGEVAVPSGAPRIHEWHVERKEAVAEACDSLGIGSGKSEFFEMPRVVGMSGPGGSGKSTLASMVIARQDVREYFYKGVLWLPVGEGAKHCLPELMLHLARMVYETVL 225
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.340e-30 Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1
Query: 4 IAELASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFG------EPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQV-GQGAKDRLPELMICLAGMVYETVM 333
+A LAS+VK+P APR++ WY R V + C R G+ SG+A G EPRMVGLAGP+G GKSTV S+++AR+DVRA F G++WL V G+GA+ RLP+LM+ LA MVYET++
Sbjct: 232 VAFLASKVKVPSRAPRIQAWYIPRSETVEDVCARLGV-CSGSAVGDLGDHEEPRMVGLAGPTGCGKSTVTSLVVAREDVRAYFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETIL 347
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE) HSP 1 Score: 114 bits (285), Expect = 3.090e-27 Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 4 IAELASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAF-GEPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGA-KDRLPELMICLAGMVYETV 330
+A+LAS V+IP APR+RD + ER V+S+ C GI A+ E ++VGLAG G+GKSTVASM+I R+DVRA F G+LWL VGQ A +DRL EL+ LAGMVYETV
Sbjct: 17 VADLASTVRIPTTAPRIRDRFVERGEVISQVCSLLGIEDHTTAYPAEMKVVGLAGAGGSGKSTVASMVIRREDVRAFFPGGVLWLSVGQRAGRDRLLELLTSLAGMVYETV 127
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE) HSP 1 Score: 110 bits (276), Expect = 5.140e-26 Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1
Query: 13 LASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGN--AFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASF-HKGLLWLQVGQGAKDRLPELMICLAGMVYETV 330
L S+ K P AP ++DW+ +RE VV+ C R G+ G A GEP +VG+AGPSGAGKST+ASM+IAR DVR F K ++WL VGQGA+DRL ++M LA MV+E V
Sbjct: 298 LYSKAKGPAEAPLLQDWFIQREPVVAAICDRLGVNDRGGSRASGEPPVVGVAGPSGAGKSTIASMIIARNDVRGHFSEKRIVWLPVGQGARDRLLDVMYRLAVMVHELV 406
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D8LT49_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT49_ECTSI) HSP 1 Score: 110 bits (274), Expect = 9.550e-26 Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 1
Query: 28 KIPPGAPRVRDWYAEREGVVSEACGRFGI---GRSGNAFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASF-HKGLLWLQVGQGAKDRLPELMICLAGMVYE 324
K P AP ++DW+ +RE VV+ C R G+ GRS A GEP +VG+AGPSGAGKST+ASM++AR DVR F KG++WL VGQGA+DRL ++M LA MV+E
Sbjct: 259 KSPAEAPLLQDWFIQREPVVAAICDRLGVNDRGRS-RASGEPPVVGVAGPSGAGKSTIASMIVARHDVRGHFSQKGVVWLSVGQGARDRLLDVMYRLAVMVHE 360
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D7G2X0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X0_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 1.050e-16 Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 1
Query: 148 MVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQV-GQGAKDRLPELMICLAGMVYETVM 333
MVGLAGP+G GKSTV S+++AR+DVRA F G++WL V G+GA+ RLP+LM+ LA MVYETV+
Sbjct: 1 MVGLAGPTGCGKSTVTSLVVAREDVRAHFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETVL 63
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5KRI5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI5_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.270e-13 Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 13 LASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMICLAGMVYETV 330
L + +P GA + W+ ER V++ N +V LAG SG+GK+TVA+ ++ +VR +F G+ WL V QGAK+RLP LM+ LA V+E +
Sbjct: 19 LGKQAAVPIGAHVRKSWHVERRHVMATVLDAL------NGSDRACVVALAGYSGSGKTTVAAEIVRSAEVREAFSDGIAWLPVYQGAKERLPSLMLQLARKVHEEI 118
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 3.380e-13 Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query: 31 IPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMICLAGMVYETV 330
+P GAP + W+ ER ++ N +V LAG SG+GK+TVA+ ++ +VR +F G++WL V +GAK RLP LM+ LA MV+E +
Sbjct: 180 VPMGAPVRKSWHVERRHAMATVLDAL------NGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQLARMVHEEI 273
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D8LL79_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL79_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.090e-8 Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1
Query: 148 MVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQ 258
MVGLAGPSG G+ST A M++ R DVRA FHKG+LWLQ
Sbjct: 1 MVGLAGPSGVGESTAAGMVVRRTDVRAHFHKGVLWLQ 37 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6476.17259.1 >prot_Ecto-sp13_S_contig6476.17259.1 ID=prot_Ecto-sp13_S_contig6476.17259.1|Name=mRNA_Ecto-sp13_S_contig6476.17259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp MIAELASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFGEPRMback to top mRNA from alignment at Ecto-sp13_S_contig6476:2488..2820+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6476.17259.1 ID=mRNA_Ecto-sp13_S_contig6476.17259.1|Name=mRNA_Ecto-sp13_S_contig6476.17259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6476:2488..2820+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6476:2488..2820+ >mRNA_Ecto-sp13_S_contig6476.17259.1 ID=mRNA_Ecto-sp13_S_contig6476.17259.1|Name=mRNA_Ecto-sp13_S_contig6476.17259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6476:2488..2820+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |