mRNA_Ecto-sp13_S_contig6476.17259.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6476.17259.1
Unique NamemRNA_Ecto-sp13_S_contig6476.17259.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D7G247_ECTSI (NB-ARC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G247_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.710e-38
Identity = 70/118 (59.32%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    4 IAELASRVKIPPGAPRVRDWYAEREGVVSEAC--------GRFGIGRSGNAFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMICLAGMVYETVM 333
            +A+LASRVKIP G PRVRDWY +R   V+ AC         R    R+ +A  +  + GLAGP GAGKSTVASM+I R+DVRASFHKG+LWL VGQGAKDRLP  M+ LAGMV++T +
Sbjct:    1 MADLASRVKIPSGTPRVRDWYVQRRAEVAHACDHLEITSSSRDSFERNNSAENQRVVFGLAGPGGAGKSTVASMVITREDVRASFHKGVLWLPVGQGAKDRLPSPMLDLAGMVHKTAL 118          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.130e-32
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    7 AELASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFGE-PRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMICLAGMVYETVM 333
            ++ A  V +P GAPR+ +W+ ER+  V+EAC   GIG   + F E PR+VG++GP G+GKST+ASM+IAR+DVR  F+KG+LWL VG+GAK  LPELM+ LA MVYETV+
Sbjct:  116 SQSAGEVAVPSGAPRIHEWHVERKEAVAEACDSLGIGSGKSEFFEMPRVVGMSGPGGSGKSTLASMVIARQDVREYFYKGVLWLPVGEGAKHCLPELMLHLARMVYETVL 225          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.340e-30
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    4 IAELASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFG------EPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQV-GQGAKDRLPELMICLAGMVYETVM 333
            +A LAS+VK+P  APR++ WY  R   V + C R G+  SG+A G      EPRMVGLAGP+G GKSTV S+++AR+DVRA F  G++WL V G+GA+ RLP+LM+ LA MVYET++
Sbjct:  232 VAFLASKVKVPSRAPRIQAWYIPRSETVEDVCARLGV-CSGSAVGDLGDHEEPRMVGLAGPTGCGKSTVTSLVVAREDVRAYFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETIL 347          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.090e-27
Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    4 IAELASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAF-GEPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGA-KDRLPELMICLAGMVYETV 330
            +A+LAS V+IP  APR+RD + ER  V+S+ C   GI     A+  E ++VGLAG  G+GKSTVASM+I R+DVRA F  G+LWL VGQ A +DRL EL+  LAGMVYETV
Sbjct:   17 VADLASTVRIPTTAPRIRDRFVERGEVISQVCSLLGIEDHTTAYPAEMKVVGLAGAGGSGKSTVASMVIRREDVRAFFPGGVLWLSVGQRAGRDRLLELLTSLAGMVYETV 127          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.140e-26
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1
Query:   13 LASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGN--AFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASF-HKGLLWLQVGQGAKDRLPELMICLAGMVYETV 330
            L S+ K P  AP ++DW+ +RE VV+  C R G+   G   A GEP +VG+AGPSGAGKST+ASM+IAR DVR  F  K ++WL VGQGA+DRL ++M  LA MV+E V
Sbjct:  298 LYSKAKGPAEAPLLQDWFIQREPVVAAICDRLGVNDRGGSRASGEPPVVGVAGPSGAGKSTIASMIIARNDVRGHFSEKRIVWLPVGQGARDRLLDVMYRLAVMVHELV 406          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D8LT49_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT49_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 9.550e-26
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   28 KIPPGAPRVRDWYAEREGVVSEACGRFGI---GRSGNAFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASF-HKGLLWLQVGQGAKDRLPELMICLAGMVYE 324
            K P  AP ++DW+ +RE VV+  C R G+   GRS  A GEP +VG+AGPSGAGKST+ASM++AR DVR  F  KG++WL VGQGA+DRL ++M  LA MV+E
Sbjct:  259 KSPAEAPLLQDWFIQREPVVAAICDRLGVNDRGRS-RASGEPPVVGVAGPSGAGKSTIASMIVARHDVRGHFSQKGVVWLSVGQGARDRLLDVMYRLAVMVHE 360          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D7G2X0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X0_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.050e-16
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 1
Query:  148 MVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQV-GQGAKDRLPELMICLAGMVYETVM 333
            MVGLAGP+G GKSTV S+++AR+DVRA F  G++WL V G+GA+ RLP+LM+ LA MVYETV+
Sbjct:    1 MVGLAGPTGCGKSTVTSLVVAREDVRAHFRDGIVWLPVRGKGAEHRLPDLMLLLANMVYETVL 63          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: A0A6H5KRI5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.270e-13
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   13 LASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMICLAGMVYETV 330
            L  +  +P GA   + W+ ER  V++            N      +V LAG SG+GK+TVA+ ++   +VR +F  G+ WL V QGAK+RLP LM+ LA  V+E +
Sbjct:   19 LGKQAAVPIGAHVRKSWHVERRHVMATVLDAL------NGSDRACVVALAGYSGSGKTTVAAEIVRSAEVREAFSDGIAWLPVYQGAKERLPSLMLQLARKVHEEI 118          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.380e-13
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   31 IPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFGEPRMVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMICLAGMVYETV 330
            +P GAP  + W+ ER   ++            N      +V LAG SG+GK+TVA+ ++   +VR +F  G++WL V +GAK RLP LM+ LA MV+E +
Sbjct:  180 VPMGAPVRKSWHVERRHAMATVLDAL------NGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQLARMVHEEI 273          
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Match: D8LL79_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL79_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.090e-8
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1
Query:  148 MVGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQ 258
            MVGLAGPSG G+ST A M++ R DVRA FHKG+LWLQ
Sbjct:    1 MVGLAGPSGVGESTAAGMVVRRTDVRAHFHKGVLWLQ 37          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6476.17259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G247_ECTSI1.710e-3859.32NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KZP3_9PHAE3.130e-3257.27NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5JK89_9PHAE1.340e-3054.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL31_9PHAE3.090e-2757.66NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JI56_9PHAE5.140e-2655.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT49_ECTSI9.550e-2657.28NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7G2X0_ECTSI1.050e-1665.08TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRI5_9PHAE3.270e-1337.74NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FZW8_ECTSI3.380e-1339.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LL79_ECTSI1.090e-872.97Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6476contigEcto-sp13_S_contig6476:2488..2820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score128.3
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog2880.D7FZP7
Model size333
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Ec32 ortholog descriptionNB-ARC
Ec32 orthologEc-09_003860.1
Cds size333
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.8227043-CDS-Ecto-sp13_S_contig6476:2487..28201681463893.8227043-CDS-Ecto-sp13_S_contig6476:2487..2820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6476 2488..2820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6476.17259.1prot_Ecto-sp13_S_contig6476.17259.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6476 2488..2820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6476.17259.1

>prot_Ecto-sp13_S_contig6476.17259.1 ID=prot_Ecto-sp13_S_contig6476.17259.1|Name=mRNA_Ecto-sp13_S_contig6476.17259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MIAELASRVKIPPGAPRVRDWYAEREGVVSEACGRFGIGRSGNAFGEPRM
VGLAGPSGAGKSTVASMLIARKDVRASFHKGLLWLQVGQGAKDRLPELMI
CLAGMVYETVM
back to top

mRNA from alignment at Ecto-sp13_S_contig6476:2488..2820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6476.17259.1 ID=mRNA_Ecto-sp13_S_contig6476.17259.1|Name=mRNA_Ecto-sp13_S_contig6476.17259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6476:2488..2820+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGCAGAGCTAGCGAGTAGGGTCAAGATTCCCCCTGGAGCCCCACG TGTTCGAGACTGGTACGCCGAGCGGGAGGGGGTGGTCTCCGAGGCGTGTG GTCGATTCGGCATTGGACGCAGCGGCAACGCGTTCGGAGAGCCACGCATG GTCGGGCTGGCAGGCCCCAGCGGCGCGGGAAAGTCCACTGTCGCGTCGAT GCTCATCGCACGGAAAGACGTGCGGGCATCTTTCCACAAGGGGTTGCTGT GGCTCCAGGTGGGGCAGGGGGCAAAGGATCGCCTCCCCGAGCTCATGATC TGTCTGGCCGGCATGGTGTACGAAACCGTAATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6476:2488..2820+

>mRNA_Ecto-sp13_S_contig6476.17259.1 ID=mRNA_Ecto-sp13_S_contig6476.17259.1|Name=mRNA_Ecto-sp13_S_contig6476.17259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6476:2488..2820+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGCAGAGCTAGCGAGTAGGGTCAAGATTCCCCCTGGAGCCCCACG
TGTTCGAGACTGGTACGCCGAGCGGGAGGGGGTGGTCTCCGAGGCGTGTG
GTCGATTCGGCATTGGACGCAGCGGCAACGCGTTCGGAGAGCCACGCATG
GTCGGGCTGGCAGGCCCCAGCGGCGCGGGAAAGTCCACTGTCGCGTCGAT
GCTCATCGCACGGAAAGACGTGCGGGCATCTTTCCACAAGGGGTTGCTGT
GGCTCCAGGTGGGGCAGGGGGCAAAGGATCGCCTCCCCGAGCTCATGATC
TGTCTGGCCGGCATGGTGTACGAAACCGTAATG
back to top