mRNA_Ecto-sp13_S_contig64683.17247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64683.17247.1
Unique NamemRNA_Ecto-sp13_S_contig64683.17247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64683.17247.1 vs. uniprot
Match: Q8QNP6_ESV1K (EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP6_ESV1K)

HSP 1 Score: 88.2 bits (217), Expect = 2.940e-18
Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 3 
Query:  150 RLMGDLIVEALREIDGYNGLNVHQGNNYVGSHMSRLWNWMLLLIDHAKTMALPLLNENSVN 332
            +LMG++IVEAL+EID YN ++VH G N+VGSHM+ LWNW++ + DH +TM+LP LN NSVN
Sbjct:  213 KLMGEMIVEALQEIDTYNNVDVHHGINHVGSHMTHLWNWLISMTDHTETMSLPPLNYNSVN 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64683.17247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNP6_ESV1K2.940e-1862.30EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64683contigEcto-sp13_S_contig64683:41..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size332
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionEsV-1-13
Ec32 orthologEc-00_006170.1
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.9664187-UTR-Ecto-sp13_S_contig64683:40..1951681463892.9664187-UTR-Ecto-sp13_S_contig64683:40..195Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig64683 41..195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.9777703-CDS-Ecto-sp13_S_contig64683:195..3721681463892.9777703-CDS-Ecto-sp13_S_contig64683:195..372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64683 196..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64683.17247.1prot_Ecto-sp13_S_contig64683.17247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64683 196..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64683.17247.1

>prot_Ecto-sp13_S_contig64683.17247.1 ID=prot_Ecto-sp13_S_contig64683.17247.1|Name=mRNA_Ecto-sp13_S_contig64683.17247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MGDLIVEALREIDGYNGLNVHQGNNYVGSHMSRLWNWMLLLIDHAKTMAL
PLLNENSVN
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mRNA from alignment at Ecto-sp13_S_contig64683:41..372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64683.17247.1 ID=mRNA_Ecto-sp13_S_contig64683.17247.1|Name=mRNA_Ecto-sp13_S_contig64683.17247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=332bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64683:41..372+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGACGCCAACCAAGAGCTAGACGTTGCTCACAAAGTCCTTCGAGAGAA
CCTCAATGGAAGGAGACACGATATCCACGTCGGCGCATTAGTTGTAGATC
TCTGTCTGGTAAGCGTTCTGTATGCGTTTCGGCATAGGAAAGCCTAGCTA
GGCTGATGGGTGATTTGATCGTCGAGGCCCTCCGAGAAATTGACGGGTAC
AACGGACTCAACGTCCACCAGGGTAACAACTACGTGGGATCGCACATGTC
GAGACTCTGGAATTGGATGTTATTATTGATTGATCACGCGAAAACAATGG
CCCTTCCTTTGTTGAACGAGAACTCGGTCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64683:41..372+

>mRNA_Ecto-sp13_S_contig64683.17247.1 ID=mRNA_Ecto-sp13_S_contig64683.17247.1|Name=mRNA_Ecto-sp13_S_contig64683.17247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64683:41..372+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGATTTGATCGTCGAGGCCCTCCGAGAAATTGACGGGTACAACGG
ACTCAACGTCCACCAGGGTAACAACTACGTGGGATCGCACATGTCGAGAC
TCTGGAATTGGATGTTATTATTGATTGATCACGCGAAAACAATGGCCCTT
CCTTTGTTGAACGAGAACTCGGTCAAC
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