mRNA_Ecto-sp13_S_contig64654.17244.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64654.17244.1
Unique NamemRNA_Ecto-sp13_S_contig64654.17244.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64654.17244.1 vs. uniprot
Match: D7FR31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR31_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.460e-36
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 MARRETKVPRRPQTKVSGPFKLPTRPQPTSSSSRG-GRGFGLWESLLEGKTAAARRRGVVLLIVRLPPAGVLLLPGPR 231
            MAR+ETKVPRR QTKVSGPFKLP RPQPTSSSSRG GRGFGLWESLLEGKTAA RRRGVVLLIVRLPPAGVLLL  PR
Sbjct:    1 MARQETKVPRRQQTKVSGPFKLPVRPQPTSSSSRGAGRGFGLWESLLEGKTAA-RRRGVVLLIVRLPPAGVLLLLVPR 77
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BLAST of mRNA_Ecto-sp13_S_contig64654.17244.1 vs. uniprot
Match: A0A6H5L164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.850e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 3 
Query:    3 GQAGDKGAQETTDQGLRPFQVADEAATHEQQQQGGEGLRPLGESAGREDG 152
            GQAGD+GAQETTDQGLRPFQVADEA THEQQQQG EGLRPLGESAGREDG
Sbjct:  152 GQAGDEGAQETTDQGLRPFQVADEAVTHEQQQQGREGLRPLGESAGREDG 201
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64654.17244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR31_ECTSI3.460e-3691.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L164_9PHAE1.850e-1994.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64654contigEcto-sp13_S_contig64654:20..253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003690.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.7137067-CDS-Ecto-sp13_S_contig64654:19..2531681463892.7137067-CDS-Ecto-sp13_S_contig64654:19..253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64654 20..253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64654.17244.1prot_Ecto-sp13_S_contig64654.17244.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64654 20..253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64654.17244.1

>prot_Ecto-sp13_S_contig64654.17244.1 ID=prot_Ecto-sp13_S_contig64654.17244.1|Name=mRNA_Ecto-sp13_S_contig64654.17244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MARRETKVPRRPQTKVSGPFKLPTRPQPTSSSSRGGRGFGLWESLLEGKT
AAARRRGVVLLIVRLPPAGVLLLPGPR*
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mRNA from alignment at Ecto-sp13_S_contig64654:20..253-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64654.17244.1 ID=mRNA_Ecto-sp13_S_contig64654.17244.1|Name=mRNA_Ecto-sp13_S_contig64654.17244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64654:20..253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGGCGGGAGACAAAGGTGCCCAGGAGACCACAGACCAAGGTCTC
CGGCCCTTTCAAGTTGCCGACGAGGCCGCAACCCACGAGCAGCAGCAGCA
GGGGGGGGAGGGGCTTCGGCCTCTGGGAGAGTCTGCTGGAAGGGAAGACG
GCGGCGGCACGGAGGCGGGGGGTGGTTCTACTGATCGTGAGGCTGCCGCC
GGCGGGAGTGCTTCTTCTGCCGGGTCCACGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64654:20..253-

>mRNA_Ecto-sp13_S_contig64654.17244.1 ID=mRNA_Ecto-sp13_S_contig64654.17244.1|Name=mRNA_Ecto-sp13_S_contig64654.17244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64654:20..253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGGCGGGAGACAAAGGTGCCCAGGAGACCACAGACCAAGGTCTC
CGGCCCTTTCAAGTTGCCGACGAGGCCGCAACCCACGAGCAGCAGCAGCA
GGGGGGGGAGGGGCTTCGGCCTCTGGGAGAGTCTGCTGGAAGGGAAGACG
GCGGCGGCACGGAGGCGGGGGGTGGTTCTACTGATCGTGAGGCTGCCGCC
GGCGGGAGTGCTTCTTCTGCCGGGTCCACGGTGA
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