mRNA_Ecto-sp13_S_contig6463.17241.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6463.17241.1
Unique NamemRNA_Ecto-sp13_S_contig6463.17241.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 624 bits (1610), Expect = 1.860e-216
Identity = 372/511 (72.80%), Postives = 411/511 (80.43%), Query Frame = 1
Query:  172 VRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNGGSRYGRSAHMMPGDMSEEDVFEHLLEEVSSYKRNDHGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHKIEVLLLEILPEADDRPVATSSTPKEV-IRSPPVLAPAHDSGLPSMGDFAAMRAELQVLKSDKEKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKHVPELDSDPNEEVDFAGGLALRRRVAVTETAKGFFDRARDRAARAGDHHPVTVAEQREFEALQNEKHRGLEARLRELEGAISKATKPKG 1701
            VRSPEH  LSP KA ++D M  AQ SSSAGL  LI +NP+ALEDIQRVI A+T RS++PDDELSD+  RR LGTLVTMSTALGEVAL+HTEDM V+RKELALPPFSKEYYSA+RSGLCQAYLAASVIDS+WVSTS TG MGK GAAL+LMS AVP++ GL  LAGKALE GD YLQTRRLVKIT  APD VECCSLARRLALQLTD LR++ S T DD  +V  +TTAG   GS  GR A MMPGDMSEEDVF++LLEEV++Y+RNDHGG RLGK HLRKLLKAIQ GCLDGS  T  KI++LLLEILPEADD+P AT  TPKEV +RSPP  A AHDSGLPS  +FAA++AEL  LKS K+KQ      XXXXX      XXXXXXXX        XXXXXXXXXXXXXXX        E+HVPELDS+P+++VDF G LALRRRVAV+ETAKGF DRARDRAARA DHHPVTV+EQREFEALQNEKHR  EARLRELEG ISKAT  KG
Sbjct:  145 VRSPEHASLSPGKAEEVDPMVRAQFSSSAGLGPLIRENPEALEDIQRVIEATTVRSIHPDDELSDIQSRRNLGTLVTMSTALGEVALKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAG---GSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERNDHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAELEEXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXXXXLERKVKKLEEHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAADHHPVTVSEQREFEALQNEKHREHEARLRELEGQISKATIRKG 652          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 603 bits (1555), Expect = 2.200e-205
Identity = 365/526 (69.39%), Postives = 405/526 (77.00%), Query Frame = 1
Query:  115 DAPVPPGSTMQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNGGSRYGRSAHMMPGDMSEEDVFEHLLEEVSSYKRNDHGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHKIEVLLLEILPEADDRPVATSSTPKEV-IRSPPVLAPAHDSGLPSMGDFAAMRAELQVLKSDKEKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKHVPELDSDPNEEVDFAGGLALRRRVAVTETAKGFFDRARDRAARAGDHHPVTVAEQREFEALQNEKHRGLEARLRELEGAISKAT 1689
            DAPV   S  QR E   G   S      SPEKA ++DR+F AQL SSAGLD+LI +NP ALE+IQ  I    A S YPD+EL DM  RR LGTLVTMSTALGEVALRHTEDM+VQRKELALPPFSK YY+A+R+GLC+AYLAAS IDSDWV TS TG MGK GAAL+LMSSAVP++ GL  LAGKALE GD YLQTRRLVKIT  APD VECCSLARRLALQLTD LR++ S T DD  +V  +TTAG   GS  GR A MMPGDMSEEDVF++LLEEV++ +RNDHGG RLGK HLRKLLKAIQ GCLDGS  T  KI++LLLEILPEADD+P AT  TPKEV +RSPP  A AHDSGLPS  +FAA++AEL  LKS K+KQ      XXXXX      XXXXXXXX        XXXXXXXXXXXXXX         E+HVPELDS+P+++VDF G LALRRRVAV+ETAKGF DRARDRAARA DHHPVTV+EQREFEALQ+EKHR  EARLRELEG I KAT
Sbjct:  321 DAPVLLDSPNQRQEVVAGSANSTGRASTSPEKAEEVDRLFRAQLVSSAGLDSLIRENPAALENIQLAIERQVAGSFYPDNELGDMQSRRNLGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAG---GSGCGRGADMMPGDMSEEDVFKYLLEEVTADERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAELEEXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXXXELERKVKKLEQHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAVDHHPVTVSEQREFEALQDEKHREHEARLRELEGQIIKAT 843          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 521 bits (1342), Expect = 2.230e-173
Identity = 296/421 (70.31%), Postives = 325/421 (77.20%), Query Frame = 1
Query:    1 ETDEGDEKQEDAQISTAAXXXXXXXXXXXXXXXXXXXXDAPVPPGSTMQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNGGSRYGRSAHMMPGDMSEEDVFEHLLEEVSSYKRNDHGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHKIEVLLLEILPEADDRPVATSSTPKEVI-RSPPVLAPAHDSGLPSMGDFAAMRAELQVLKSDKEKQ 1260
            +T +GDEK+EDA      XXX           XXX   D PVP G   QR E      RSPE   LSP KA ++DR+FSAQLSSSAGLD+LI + P ALEDIQRVI ++ A SV PDD+LSD+DGRRKLGTLVTMSTALGEVALRHTEDM++QRKELALP FS  YYSA+RSGLCQAYLAASVIDSDWVSTS TG MGKAGAA++LMSSAVPVV GL  LAGKALE GDHYLQTRRLVKIT  A DAV+CC LARRLALQLTD LR+D   TAD+  EV   TTAGMNGG      A M PGDMSEEDVFE+LLEEV+SYKRNDHGG RLGK HLRKLLKAIQRG LDGS  TE KIEVL+L+ILPEAD    AT STPKEVI RSPPV+ PAHD GLPS  +F AM+A L+ LK D+E Q
Sbjct:  333 QTLKGDEKEEDAPXXXXXXXXVLLPQQQETGEXXXNEKDNPVPLGFPNQREEAVWERARSPERASLSPGKAEEMDRLFSAQLSSSAGLDSLIREKPKALEDIQRVIESTVAGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGG------ADMTPGDMSEEDVFEYLLEEVASYKRNDHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQAALEALKFDRETQ 747          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 527 bits (1357), Expect = 3.960e-172
Identity = 380/695 (54.68%), Postives = 425/695 (61.15%), Query Frame = 1
Query:  136 STMQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNGGSRYGRSAHMMPGDMSEEDVFEHLLEEVSSYKRNDHGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHKIEVLLLEILPEADDRPVATSSTPKEVI-RSPPVLAPAHDSGLPSMGDFAAMRAELQVLKSDKEKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKHVPELDSDPNEEVDFAGGLALRRRVAVTETAKGFFDRARDRAARAGDHHPVTVAEQREFEALQNEKHRGLEARLRELEGAISKATK 1692
            S   R    GG VRSPE+  LSP KAA++DR+F  QLSSSAGLD+LI++NP+ALEDIQRVI A  A   Y DDELSDM+ RRKLG L+ M+ ALGEVAL HTED DVQRKELAL PFSK YY+A+RSGLC AYLAASVIDSDWVSTS TG MGK G AL L+SSAVPV+ GLAGLAGKAL TGDHYLQTRRL KIT  A D +ECCSLARRLALQLTD L+ DT    D+  +VC  TTAGMNGGS  GR A ++P  + E+DVFEHLLEEV+ Y+R+DHGG RLGK HLRKLLKAIQRGCLDGS   + K+E+LLLEILPEAD R   TS +PKEVI +SPP LAP H+  LPSM D AA++A ++ L S K+ Q    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                                                                                               EKH  ELDS+P+++VD+ GGLA+R+RVAVTETA+GFFDRARDRA  A DHHPVTVAEQREFEALQNEKH G EARLRELEG ISKATK
Sbjct:  445 SPTHRQAAVGGRVRSPENASLSPGKAAEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDETDQVCTHTTAGMNGGSGSGRDADILPDIIIEDDVFEHLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMELLLLEILPEADIRTSETSISPKEVIVQSPPALAPTHNGTLPSMADIAALQAAVEALTSAKDMQRAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVKKLEKHASELDSEPDDDVDYGGGLAVRQRVAVTETAQGFFDRARDRATTAADHHPVTVAEQREFEALQNEKHCGHEARLRELEGEISKATK 1139          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 1.550e-161
Identity = 264/392 (67.35%), Postives = 305/392 (77.81%), Query Frame = 1
Query:  115 DAPVPPGSTMQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNGGSRYGRSAHMMPGDMSEEDVFEHLLEEVSSYKRNDHGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHK----------IEVLLLEILPEADDRPVATSSTPKEVI-RSPPVLAPAHDSGLPSMGDFAAMRAELQVLKSDKEK 1257
            DAPVPPGS   R E  G  VRSPEH  LSPEKA + DR+F AQLSSSAGLD+LI +NP ALEDIQRVI AS A SV  D+ELSDM  RRKLGTLVTMSTALGEV L+HTEDMDV+R+EL LPPFSK YY+A+R+G+C AYLAASVIDSDWVSTS TG MGKAGAAL++MS A+PVV G  GLAGKA+++GDHYLQTRRLVKIT  A DA+ECCSLARRLALQL   LR+D +  A++V  + A  TAGMNGGS  G+  + +P  MSE DVFE++L+EV+S   NDHGG RLGK HLRKLLKA+QRGCLDG  CTE K          + VLLLEILPEAD R  ATSS  KEVI +S PV+  AHDSG PSM DFAA++A ++ LKSD ++
Sbjct:  283 DAPVPPGSRNGRHEAVGERVRSPEHASLSPEKAEEADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKITAMAHDAIECCSLARRLALQLAGGLRNDANAGANEVDHIRADITAGMNGGSGSGQGPNSLPAIMSEGDVFEYVLKEVASCGHNDHGGKRLGKKHLRKLLKAVQRGCLDGLSCTEQKARTRMSSRQQMAVLLLEILPEADIRHAATSSLLKEVIVKSLPVVGAAHDSGSPSMADFAALQAAVEELKSDNKQ 674          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 478 bits (1230), Expect = 9.850e-153
Identity = 259/377 (68.70%), Postives = 291/377 (77.19%), Query Frame = 1
Query:  133 GSTMQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNGGSRYGRSAHMMPGDMSEEDVFEHLLEEVSSYKRNDHGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHKIEVLLLEILPEADDRPVATSSTPKEVI-RSPPVLAPAHDSGLPSMGDFAAMRAELQVLKSDKEKQ 1260
            GS  QR E     VRSPEH  LSPEKA ++DR+F  QLSSSAG D+LI +NP+ALEDI RVI A  A S+   DE+SDM+ RRKLGTLV M+ ALGEVAL HTEDMDVQRKELAL PFSK YY+A+RSGLC AYLAASVIDSDWVST  TG MGK G AL L+SSAVPV+ GLAGLAGKAL TGDH LQTRRLVKIT  A D +ECCSLARRLALQLTD L+ DT    D+  +V    TAGMNGGS  GR A + P DM E+DVFE+LLEEV+ Y+R+DHGG RLGK HLRKLLKAIQRGCLDGS   + K+E LLLEILP AD R   TSSTPK+VI RSPP LAP HD  LPSM D AA++A ++VL   K+KQ
Sbjct:  404 GSPNQREEVVREGVRSPEHASLSPEKAEEVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMNGGSGSGRDADISPDDMIEDDVFEYLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMADIAALQAAVEVLTLAKDKQ 780          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 8.140e-71
Identity = 228/551 (41.38%), Postives = 311/551 (56.44%), Query Frame = 1
Query:  136 STMQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNG---GSRYGRSAHMMPGDMSEEDVFEHLLEEVSSYKRND----------HGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHKIEVLLLEILPEADDRPVATSSTPKE-----VIRSPPVLAPAHDSGL-PSMGDFAA-----MRAELQVLKSDKEKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKHVPELDSDPNEEVDFAGGLALRRRVAVTETA-KGFFDRARDRAARAGDHHPVTVAEQ-------REFEALQNEKHRGLEARLRELEGAISKATK 1692
            S+  + +  G   R+         + A +D M  AQ+SS + L TL   +   LE +++++ A       P   LS+     +L  LV M+  LG++  RH  + D+QR+ELALPP  K YY+A+R+GLC AYLAASV+ S  V TS TGRMG AG  L+ +SSAVPVV GLAGLA  AL+ GD YLQTRR+ KI   APD+ +CC LAR LALQL+D     T  T D   E  +  TAGM G   G  + +     P   +EE V +  +EEV+ Y+ N+            G +LGK HL+ LLKA+ R CL G+   + K++VL+  ILPEA+ R  +TS   +E        + P    +H +   P++ D AA     + A ++ + S + +                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   K V +   D +  V   GGLAL++R AVTETA   F +RA++RA  AG+   VT+ +        +E  +  +E HR  +A+L   +GA+ + T+
Sbjct:  378 SSSTQGDKPGKTDRATTEPISGSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVTRERTNHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERVASMRMRTEATHEELKAGLEASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILNKKVMKPGPDSDSLVASGGGLALKQRQAVTETALDDFLERAQERAPAAGND-VVTLGQLAEAVELLKEVHSKNDELHREHDAKLTRFQGAVDRITR 927          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: A0A6H5KJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV0_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 3.300e-69
Identity = 139/231 (60.17%), Postives = 158/231 (68.40%), Query Frame = 1
Query:  145 QRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVA-------------------------------LRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGK---------AGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVK 717
            QR E     VRSPE   LSPEK  ++DR+F+AQLSS AGL++L+ +NP+ALEDIQRVI ++  RS YPDD+ SDMDGRRKL TLVTMSTALGEVA                               LRHTEDMDVQRKE+ALP F K Y + +RSGLCQAYLA+SVIDSDWVS S TG MGK         AGAA++LMS AVPVV GL  LAGKALE GDH+ QTRRLVK
Sbjct:  135 QREEVVRERVRSPERASLSPEKTEEVDRLFTAQLSSHAGLNSLVRENPEALEDIQRVIQSTVVRSFYPDDKHSDMDGRRKLATLVTMSTALGEVAVSPVRGTIPSACTSNGLTSFSVRNWCRIWNVLRHTEDMDVQRKEMALPLFLKAYCTVVRSGLCQAYLASSVIDSDWVSMSKTGGMGKVGAALGSKSAGAAVKLMSRAVPVVGGLPELAGKALEAGDHFFQTRRLVK 365          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 1.620e-64
Identity = 147/349 (42.12%), Postives = 199/349 (57.02%), Query Frame = 1
Query:  136 STMQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNG---GSRYGRSAHMMPGDMSEEDVFEHLLEEVSSYKRND----------HGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHKIEVLLLEILPEADDRPVATSSTPKE 1143
            S+  + +  G P R+         + A +D M  AQ+SS + L TL      +LE +++++ A       P   LS+     ++  LV M+  LG +  RH  + D+QR+ELALPP  K YY+A+R+GLC AYLAASV+ S  V TS TGRMG AG  L+ +SSAVPVV GLAGLA  AL+ GD YLQTRR+ KI   APD+ +CC LAR LALQL+D     T  T D   E    TTAGM G   G  + +     P   +EE V +  +EEV+ Y+ N+            G +LG  HL+ LLKA+ R CL G+   + K++VL+  ILPEA+ R  +TS   +E
Sbjct:  590 SSSTQGDKPGKPDRATTGPISGSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHGTRE 938          
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.980e-62
Identity = 143/349 (40.97%), Postives = 196/349 (56.16%), Query Frame = 1
Query:  136 STMQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPDALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHTEDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRMGKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDAVECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNGGSR---YGRSAHMMPGDMSEEDVFEHLLEEVSSYKRND----------HGGNRLGKMHLRKLLKAIQRGCLDGSRCTEHKIEVLLLEILPEADDRPVATSSTPKE 1143
            S+  + +  G P  +         + A +D +  AQ+SS + L TL   +  +LE + +++ A       P   L+      +L  LV M+  LG++  RH  + D+QR+ELALPP  K YY+A+R+GLC AYLAASV+ S  V TS TGRMG AG  L+ +SSAVPVV GLAGLA  AL+ GD YLQTRR+ KI   APD+ +CC LAR LALQL+D     T  T D   E    TTAGM G      + +     P   +EE V +  +EEV+ Y+ N             G +LG  HL+ LLKA+ R CL G+   + K++VL+  ILPEA+ +  +TS   +E
Sbjct:  405 SSSTQGDKPGKPDGATTEPISGSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQE 753          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6463.17241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G1L2_ECTSI1.860e-21672.80Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI2.200e-20569.39Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FH90_ECTSI2.230e-17370.31Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FH89_ECTSI3.960e-17254.68Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FHA2_ECTSI1.550e-16167.35Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KZF6_9PHAE9.850e-15368.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA2_ECTSI8.140e-7141.38Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJV0_9PHAE3.300e-6960.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA0_ECTSI1.620e-6442.12Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI1.980e-6240.97Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6463contigEcto-sp13_S_contig6463:3149..7373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score603.2
Seed ortholog evalue1.1e-169
Seed eggNOG ortholog2880.D7FHA3
Model size1701
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.Leucine rich repeat
EggNOG OGs2QVSR@2759,COG4886@1
Cds size1560
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6463.17241.1prot_Ecto-sp13_S_contig6463.17241.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6463 3149..7232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.41045-CDS-Ecto-sp13_S_contig6463:3148..32911681463892.41045-CDS-Ecto-sp13_S_contig6463:3148..3291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 3149..3291 -
1681463892.4228213-CDS-Ecto-sp13_S_contig6463:3788..38661681463892.4228213-CDS-Ecto-sp13_S_contig6463:3788..3866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 3789..3866 -
1681463892.4341352-CDS-Ecto-sp13_S_contig6463:4026..40901681463892.4341352-CDS-Ecto-sp13_S_contig6463:4026..4090Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 4027..4090 -
1681463892.4482355-CDS-Ecto-sp13_S_contig6463:4262..43791681463892.4482355-CDS-Ecto-sp13_S_contig6463:4262..4379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 4263..4379 -
1681463892.4589837-CDS-Ecto-sp13_S_contig6463:4526..47571681463892.4589837-CDS-Ecto-sp13_S_contig6463:4526..4757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 4527..4757 -
1681463892.4692214-CDS-Ecto-sp13_S_contig6463:5060..51531681463892.4692214-CDS-Ecto-sp13_S_contig6463:5060..5153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 5061..5153 -
1681463892.4789755-CDS-Ecto-sp13_S_contig6463:5673..57831681463892.4789755-CDS-Ecto-sp13_S_contig6463:5673..5783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 5674..5783 -
1681463892.4878924-CDS-Ecto-sp13_S_contig6463:6098..62461681463892.4878924-CDS-Ecto-sp13_S_contig6463:6098..6246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 6099..6246 -
1681463892.4978538-CDS-Ecto-sp13_S_contig6463:6392..65121681463892.4978538-CDS-Ecto-sp13_S_contig6463:6392..6512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 6393..6512 -
1681463892.508187-CDS-Ecto-sp13_S_contig6463:6637..68051681463892.508187-CDS-Ecto-sp13_S_contig6463:6637..6805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 6638..6805 -
1681463892.5166564-CDS-Ecto-sp13_S_contig6463:6944..72321681463892.5166564-CDS-Ecto-sp13_S_contig6463:6944..7232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6463 6945..7232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.5249286-UTR-Ecto-sp13_S_contig6463:7232..73731681463892.5249286-UTR-Ecto-sp13_S_contig6463:7232..7373Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6463 7233..7373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6463.17241.1

>prot_Ecto-sp13_S_contig6463.17241.1 ID=prot_Ecto-sp13_S_contig6463.17241.1|Name=mRNA_Ecto-sp13_S_contig6463.17241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=520bp
MQRPETAGGPVRSPEHDFLSPEKAAKLDRMFSAQLSSSAGLDTLIEKNPD
ALEDIQRVIAASTARSVYPDDELSDMDGRRKLGTLVTMSTALGEVALRHT
EDMDVQRKELALPPFSKEYYSALRSGLCQAYLAASVIDSDWVSTSNTGRM
GKAGAALQLMSSAVPVVDGLAGLAGKALETGDHYLQTRRLVKITTTAPDA
VECCSLARRLALQLTDSLRHDTSTTADDVGEVCASTTAGMNGGSRYGRSA
HMMPGDMSEEDVFEHLLEEVSSYKRNDHGGNRLGKMHLRKLLKAIQRGCL
DGSRCTEHKIEVLLLEILPEADDRPVATSSTPKEVIRSPPVLAPAHDSGL
PSMGDFAAMRAELQVLKSDKEKQRAELEEQQEKNEAQQAKLEEQQAKIEA
VESDKEKQKMELEQLASAKDELERKVKKLEKHVPELDSDPNEEVDFAGGL
ALRRRVAVTETAKGFFDRARDRAARAGDHHPVTVAEQREFEALQNEKHRG
LEARLRELEGAISKATKPKG
back to top

mRNA from alignment at Ecto-sp13_S_contig6463:3149..7373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6463.17241.1 ID=mRNA_Ecto-sp13_S_contig6463.17241.1|Name=mRNA_Ecto-sp13_S_contig6463.17241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6463:3149..7373- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACAGACGAGGGCGACGAAAAGCAAGAGGATGCGCAGATATCCACCGC TGCTAGCCCTCCCGTCTTGCTACTGCAGCAGCAGTAGATTGACGATGACG ACGGAAACGAGGAGGATGCCCCGGTGCCGCCTGGCTCCACCATGCAAAGA CCGGAGACGGCAGGGGGACCGGTCCGTTCTCCGGAACATGATTTCTTGTC CCCAGAGAAGGCAGCAAAATTGGACCGAATGTTCAGTGCGCAGCTTTCGT CCTCTGCAGGGTTAGATACACTCATTGAAAAAAATCCTGACGCTCTGGAG GACATCCAGCGGGTCATTGCGGCTTCAACCGCTCGAAGCGTTTATCCTGA TGATGAGCTTAGCGACATGGACGGGCGCCGGAAGCTCGGCACGTTGGTGA CCATGTCAACGGCACTAGGCGAGGTTGCGGTGAGTCTTGTGCATGAAACG ATCCCTTCAGGATGCAGTACCAATGGCTAGAACAGCTTTGCGATGAGAAA CCGATGTCGAATATGCAATGTGGTAAGTCGGCAAGTCGCCCAAAACGCAC TGCTGCCCGCGTGCGCAGTTGAGGCACACTGAGGACATGGACGTCCAGCG GAAGGAGCTGGCCTTGCCTCCGTTCTCCAAAGAATACTACTCCGCCCTCA GAAGCGGTCTCTGCCAGGCGTATCTCGCTGCCAGCGTCATCGACAGTGAT TGGGTGTCCACGAGCAACACCGGTCGCATGGGCAAGGTGGGTGCCGCGTT AGGATCAGAGCTTGTGGATTGCGGAACCTGCGCGGTCTGTGATTGCAATG TAAATGGAATGCTCTCTGCCAGTCATTTTGAAGCCCTCGTGTAACCTTTG CTATATTTCAGGCAGGAGCGGCCTTGCAGCTCATGTCTAGCGCCGTTCCC GTGGTCGATGGGCTGGCCGGACTAGCGGGCAAAGCTTTGGAGACCGGAGA CCACTATCTCCAAACTCGGCGATTGGTGAAGGTGAGTCTATCGCTAGACG TGCGTGCTCCTAGTTTTGCCGTGTGCGGTGCGATAGTCACCCCTTACGGT GCGATAGTCACCCCTCGTGTACCCAGCCCGTCGAACTAGTCTAAACGATA CCTAGGTCCACCCTCGATACTCGGCAGATCACGACTACGGCACCTGACGC GGTGGAGTGTTGCTCTCTGGCGAGAAGGTTGGCCCTTCAACTAACAGACA GCCTCAGACATGACACCAGCACCACGGCTGACGACGTGGGCGAAGTTTGT GCGAGCACCACGGCGGGCATGAACGGTGCGGTGGGAAAGAGGACTGTATC TAGCAGTGCCGTTTGAATTGTGCACTTGGTTTTGTTCGTGGCGGAACAGC GCAGAGGCATGCCTGCATGTTGACATGTTGAAATCAATCGAATTGTGCAG TAGTTTGGACCCTCCTATAATTCTTGGGTTGGAGTACATTTATTTGGTCA CTTCACATAATTGTTTCTATCCATCGCCAGCACTACTACAAGCGCACTGC CCGAGCGAAGGCAAGTGCCAACCATCCCCGGACCAACTTTCTGACCTTCG TTACTGACTGTGGCTACGATAATGCTGTTGCGTATCTCAGGCGGGTCTAG ATATGGTCGGTCCGCACATATGATGCCCGGGGACATGAGCGAAGAGGACG TCTTTGAACACTTGCTTGAAGAGGTTTCCAGCTATAAACGCAACGATCAT GTACGTCCACGAGCTTGTTGTCTGCCATTCACCATGATGTTGTTATTGTA CAGACAGCACTTCAGACAGTAGTACGCTGTAGTCGACAAACATTCATTTT GGTGAAGTGCGGGACAAGGGGGGTGATGCTGCTGCTGTAGTCGAATTGTA GTGTGTGGGCGTGTAGTTCAGTTGCGAGCACGCAAACAAAAGTGCTGCAG GAATTGTAGGTGTACCTCCTCGGGCTTGTTTACCCTTTTCTTGCTAAAAG TGTGCGTGTTCTTTAGATCTTCTGATGGCTCTAGCATTTTTGTGACCACG GGCCGAGTCTTTGCTAGATTTTGGGAAAAGCAACTGACGCGAGTTTAATA TGAAGGAAACAACGACAACAACAACAACAACAATGATATAATTGGCCGTC GTATGACCATACCGCCGTTTACCATGAGGAGGTTTCAGTAAGAGAATGTT TCTTCCCGAATTCAGGAAGGTACCGCGCTAATGATCGTCGACATTGATTC GCTCTCTTTCTTTCCTTTAGGGCGGTAACCGACTGGGCAAGATGCATCTT CGCAAGCTGTTGAAAGCTATTCAGCGAGGTTGCCTTGACGGCTCACGCTG CACCGAACACAAGGTGTGGATTCGCATGTGTTCCGGGCACAGGTGTACGT CTCTTTTTTGTCTTGCGGTTTTTTTGCCCGTAGACCAACTCTTGGGGCTG CCGAGTATGCCGAGCGAGGGTCTGCAAGGGACGGGAACATTGTCACCGAG CTCTGTAGGGGTGGATGCCTTGTCACCTCTCGCGGAATCACCCTACGGTC CAGATGGTGTAGTGTTCGATGAAGGAAATGCCTAAATTACGCCAGTTCCC TAGAAACATGTCGACACTCTCGTTTCATCTTGGACGTCGTCTTAGGTTTG TTCATGCTGCGAGCAGATTGAGGTCCTTCTACTGGAGATTCTTCCGGAGG CTGATGATAGACCCGTCGCAACGTCGAGTACGCCGAAGGAAGTGATTCGA TCTCCTCCTGTTTTGGCGCCCGCCCACGACAGCGGGTTGCCCTCGATGGG AGACTTTGCGGCCATGCGAGCAGAGTTGCAAGTACTCAAGTCTGACAAGG AAAAACAACGAGCAGAGCTGGAAGAGCAACAAGAAAAAAATGAAGCAGTG GCGTCGGACAAGGCCACGCAGCAAGCAGAATTGGAAGCGCTGCGATCTGC CAAGGAAAAGCAGCAAGCAGAGTTATCAGCGTTGAAATCCGCCAAGGAAA GGCAACAAGCAGAGTTAGCAGCGTTGAAATCCGCCAAGGAAAAGCAACAA GCGAAGCTGGAAGAACAGCAAGCAAAAATAGAAGCAGTGGAGTCCGACAA GGAAAAGCAGAAGATGGAGCTGGAACAGTTGGCGTCCGCCAAGGACGAGC TCGAGCGTAAGGTGAATAGCGATCGACTTCACATGCAAAGGCAACTGCAT GTATGCGAGAGTTCTGGCATTCAGCGTATTCTGAGTCGAGTGTCAACATG AAGAATAGTTTGGCGGACGACGTGCAAATTTTGCTCTCTCGTCATCACGA AGCACTCTTTGTCTTGTCTTTTCGTCTCTGTAGGTGAAAAAACTGGAGAA GCATGTCCCTGAGCTTGACAGTGACCCGAACGAAGAGGTGGATTTCGGTA AGTCAACTTGCTTTTGTATTACCATCACCTGCAGTAGTGCGAGAAATTAC CGGGCGCGACCGAGAGCAGGACTTGCAGCATCACCAGAGACTGAGCCGCG AGAATGCCGCCCCACATTGTCCCCTGGTATTTGCGAATTTTTCACGGCCA ATGACAGCGGGGGGGCTGGCTCTCAGGCGACGGGTGGCTGTAACGGAGAC CGCGAAAGGATTCTTCGACAGAGCTCGAGATAGAGGTGAGCCAACGGTCG AGAATCGTACTTGTTGGTATATTTCTTCCGACATGGTCGTGTGTGCTGGT TGAATACCGGTTGTTCTGCAGAGTCATCGTGGTACGGGACAACAGCCGAG TAAGCGGAACTACAGCTGAGGATGTATTTGGTGTGGTTTGAGAACGGTTC TTCCAGTCATCTTCGTGAAGAAACTTGCTAAAGGGGAAAATAGCAAAATG TCTGGCGCTAGTTGCCGGCGATCTGTGATTCCAATCCCGTGTCACGACTG CCTACGAAAAGATGGAGCTGTTTTTCGCTTCACGGGCCCTCTTCCATTTG TACTGAGTTACACAACCAAACTTGCGTACGCCCGGATACTTCTGCCCGGC TACCGCTTGCGATTGCTCCCCTTCCCCGCCCGAACCGCCCACCCCACCGT GCTCGAAAAACAGCTTACGGCAGAGAGACTTTTGGCATGCTTACCCTTTC ATGCGTTTGCTTTCTCTGTTGCTGTGTATCAGCGGCGAGAGCGGGTGACC ACCATCCGGTGACTGTCGCCGAACAAAGAGAGTTTGAGGCACTGCAGAAT GAAAAGCACCGTGGACTCGAAGCTAGATTGAGGGAGCTGGAGGGAGCGAT CAGTAAGGCCACCAAACCGAAGGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6463:3149..7373-

>mRNA_Ecto-sp13_S_contig6463.17241.1 ID=mRNA_Ecto-sp13_S_contig6463.17241.1|Name=mRNA_Ecto-sp13_S_contig6463.17241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1560bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6463:3149..7373- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAAGACCGGAGACGGCAGGGGGACCGGTCCGTTCTCCGGAACATGA
TTTCTTGTCCCCAGAGAAGGCAGCAAAATTGGACCGAATGTTCAGTGCGC
AGCTTTCGTCCTCTGCAGGGTTAGATACACTCATTGAAAAAAATCCTGAC
GCTCTGGAGGACATCCAGCGGGTCATTGCGGCTTCAACCGCTCGAAGCGT
TTATCCTGATGATGAGCTTAGCGACATGGACGGGCGCCGGAAGCTCGGCA
CGTTGGTGACCATGTCAACGGCACTAGGCGAGGTTGCGTTGAGGCACACT
GAGGACATGGACGTCCAGCGGAAGGAGCTGGCCTTGCCTCCGTTCTCCAA
AGAATACTACTCCGCCCTCAGAAGCGGTCTCTGCCAGGCGTATCTCGCTG
CCAGCGTCATCGACAGTGATTGGGTGTCCACGAGCAACACCGGTCGCATG
GGCAAGGCAGGAGCGGCCTTGCAGCTCATGTCTAGCGCCGTTCCCGTGGT
CGATGGGCTGGCCGGACTAGCGGGCAAAGCTTTGGAGACCGGAGACCACT
ATCTCCAAACTCGGCGATTGGTGAAGATCACGACTACGGCACCTGACGCG
GTGGAGTGTTGCTCTCTGGCGAGAAGGTTGGCCCTTCAACTAACAGACAG
CCTCAGACATGACACCAGCACCACGGCTGACGACGTGGGCGAAGTTTGTG
CGAGCACCACGGCGGGCATGAACGGCGGGTCTAGATATGGTCGGTCCGCA
CATATGATGCCCGGGGACATGAGCGAAGAGGACGTCTTTGAACACTTGCT
TGAAGAGGTTTCCAGCTATAAACGCAACGATCATGGCGGTAACCGACTGG
GCAAGATGCATCTTCGCAAGCTGTTGAAAGCTATTCAGCGAGGTTGCCTT
GACGGCTCACGCTGCACCGAACACAAGATTGAGGTCCTTCTACTGGAGAT
TCTTCCGGAGGCTGATGATAGACCCGTCGCAACGTCGAGTACGCCGAAGG
AAGTGATTCGATCTCCTCCTGTTTTGGCGCCCGCCCACGACAGCGGGTTG
CCCTCGATGGGAGACTTTGCGGCCATGCGAGCAGAGTTGCAAGTACTCAA
GTCTGACAAGGAAAAACAACGAGCAGAGCTGGAAGAGCAACAAGAAAAAA
ATGAAGCACAACAAGCGAAGCTGGAAGAACAGCAAGCAAAAATAGAAGCA
GTGGAGTCCGACAAGGAAAAGCAGAAGATGGAGCTGGAACAGTTGGCGTC
CGCCAAGGACGAGCTCGAGCGTAAGGTGAAAAAACTGGAGAAGCATGTCC
CTGAGCTTGACAGTGACCCGAACGAAGAGGTGGATTTCGCGGGGGGGCTG
GCTCTCAGGCGACGGGTGGCTGTAACGGAGACCGCGAAAGGATTCTTCGA
CAGAGCTCGAGATAGAGCGGCGAGAGCGGGTGACCACCATCCGGTGACTG
TCGCCGAACAAAGAGAGTTTGAGGCACTGCAGAATGAAAAGCACCGTGGA
CTCGAAGCTAGATTGAGGGAGCTGGAGGGAGCGATCAGTAAGGCCACCAA
ACCGAAGGGT
back to top