mRNA_Ecto-sp13_S_contig6460.17238.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6460.17238.1
Unique NamemRNA_Ecto-sp13_S_contig6460.17238.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6460.17238.1 vs. uniprot
Match: D8LLC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC9_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 7.190e-67
Identity = 161/199 (80.90%), Postives = 162/199 (81.41%), Query Frame = 1 
Query:    1 MNFIKKVTGVGGDAEAAPTPAPAPTDXXXXXXXXXDTPEKTTPPPAGIGMLAGAIHSVVGXXXXXXXXXXXXXXXXXXXX-AEAETPGIIGNLTSTITNAAHSVTDAAAGIVGGGKKDGADAAAVEVTSXXXXXXXXXXXXXXXXGGIXGFLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK 594
            MNFIKKVTG GGDAEAAPTPAPAPTD XXXXXXXX          AGIGMLAG I SVVGXXXXXXXXXXXXXXXXXX   AEAETPGIIGNLTSTITNAAHSVTDAA GIVGGGKK GADAAAVEV +                GGIX FLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK
Sbjct:    1 MNFIKKVTGAGGDAEAAPTPAPAPTDAXXXXXXXXXXXXXXXXXAAGIGMLAGVIQSVVGXXXXXXXXXXXXXXXXXXAPPAEAETPGIIGNLTSTITNAAHSVTDAATGIVGGGKKGGADAAAVEVPAVPAVETPEEGKEG---GGIXXFLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK 196
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BLAST of mRNA_Ecto-sp13_S_contig6460.17238.1 vs. uniprot
Match: A0A6H5JTZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ4_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 3.830e-56
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 1 
Query:  148 MLAGAIHSVVGXXXXXXXXXXXXXXXXXXXXAEAETPGIIGNLTSTITNAAHSVTDAAAGIVGGGKKDGADAAAVEVTSXXXXXXXXXXXXXXXXGGIXGFLSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK 594
            MLAGAI SVVGXXXXXXXXXXXXXXXXXXXXAEAETPGIIGNLTSTITNAAHSVTD AAGI+GGGKKDGADAAAVEVTSXXXXXXXXXXXXXXXXGGI GFL+NVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK
Sbjct:    1 MLAGAIQSVVGXXXXXXXXXXXXXXXXXXXXAEAETPGIIGNLTSTITNAAHSVTDTAAGIIGGGKKDGADAAAVEVTSXXXXXXXXXXXXXXXXGGIGGFLANVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6460.17238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLC9_ECTSI7.190e-6780.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTZ4_9PHAE3.830e-5696.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6460contigEcto-sp13_S_contig6460:4005..6650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size599
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002160.1
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.1810448-CDS-Ecto-sp13_S_contig6460:4004..40221681463892.1810448-CDS-Ecto-sp13_S_contig6460:4004..4022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6460 4005..4022 +
1681463892.19094-CDS-Ecto-sp13_S_contig6460:5593..60051681463892.19094-CDS-Ecto-sp13_S_contig6460:5593..6005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6460 5594..6005 +
1681463892.1999273-CDS-Ecto-sp13_S_contig6460:6481..66481681463892.1999273-CDS-Ecto-sp13_S_contig6460:6481..6648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6460 6482..6648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.20875-UTR-Ecto-sp13_S_contig6460:6648..66501681463892.20875-UTR-Ecto-sp13_S_contig6460:6648..6650Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6460 6649..6650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6460.17238.1prot_Ecto-sp13_S_contig6460.17238.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6460 4005..6648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6460.17238.1

>prot_Ecto-sp13_S_contig6460.17238.1 ID=prot_Ecto-sp13_S_contig6460.17238.1|Name=mRNA_Ecto-sp13_S_contig6460.17238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
MNFIKKVTGVGGDAEAAPTPAPAPTDAPTPSPAPADTPEKTTPPPAGIGM
LAGAIHSVVGGGSSSSSSGTAAGGEAPPPPAEAETPGIIGNLTSTITNAA
HSVTDAAAGIVGGGKKDGADAAAVEVTSVPAVPAVETPEEGKEGGGIGGF
LSNVTHTVTDGVKGAMGAVRDEIQADIKPSLKDDPAPADAAADAAPAK*
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mRNA from alignment at Ecto-sp13_S_contig6460:4005..6650+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6460.17238.1 ID=mRNA_Ecto-sp13_S_contig6460.17238.1|Name=mRNA_Ecto-sp13_S_contig6460.17238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2646bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6460:4005..6650+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTCATCAAAAAGGTGTGTGTGCGATGATGGATCTGGACGAGGTG
CACTCCAAGCAAGCAGTAGCGGTTGGCGATCGCACGCAATGGTCGAAGAG
GCGAACAGACGACGTACCCATGAAACCATGTGGCGCAGTCCCCGGACGTT
CTCTACTGCCCTCGCTCCCAAGGACTCTTGGCTTTCGTGCAAGTTGTGGG
CGTCATCGTCCTTGCCATGGGGGCTACGTTATTTTGCTTCATGTAGCGTC
GCTCACATTCTCGGATCAATATGCTCCCCCCGCCCCGTACCTGCTGTTGT
TGTTTTCGTTCGCGAGTTCAAGTTGGTGATCGGAGTTCAGAAAAATCCTT
GGCGCATCGGGCTGGTCGTGGTTTCTAGAGTGGGGAACCTGGAACCGGCT
TTTTATCAGTTTTATACTGCTGCACATTTGATTAATTCTTCGTAGCTCAT
CTCTCATTTCAAGTTCGTTGTGGAGACCAAAACAGCACACCTACAGTAGT
ACCAAGTGGCTTGCGAGTCGGAATCCAACTCCCGCACGCTGAGGTTCGCT
CCTCCTCCGTGTTTTCTGCCGGTAGCTGTGCCATATCAACATTGGGGGTT
TTATTTCCAAGTGGACGCATAGCAGCAAACCCCCCCTACACACACGAGAG
TTCGGAGATCGTTTCATTCCCTCCTCACATGTGCAAGGGTGAATTTCGTC
GCGTCAGAAGATTACATTCAGTAGTCTACATGTAGTTGTTGGCGGCTCCC
CATCATCAGTATTTACTCTTCTCGTGGTTGCATGTGTTGTTGTCGTCGCA
TGCTGTTGGTCTCGTCATTTCTTGGTCCCCTGCTCTCGGATGGAGCTATG
TACTGCTGTAGATAGCATTCTGTAAAACTAGTATTTTCGATCAACACATC
AACGCACAACGACCACTAATTTTGTAAGCTCACAACGAAATAAACATACG
CAATTGGTTCTTTCCTACACGATTACATTCGTCAATGAATGCGTTTTTGC
AGGTATGGTGGAAGGATATTCATGGACACACGTCTCAACTTACAGCTGTA
GCCTCGTTGTGTGGCCGTACATCACATTCCCTCTGTAGAACAATCTGAAC
ACGTGGTCCATCACTGCTGCTATTGTGATGCCATGCATTTTATCGAAGAC
GGATGGACACGTGGCGGCTTCTCTGTGGACATTCGTATCGTGTGCATTAG
TCTGCGATTCTCTTTATGCAACGCTATTCTCTTTATGCAACGCTTTGAGT
ACGACAAGAGGGACTGAAGCCACATGCATGCGCCCCCATCATGTGGAAGT
GGATCACATAGACGTTAGCTCCTTGTGATCTGAAGCTCAACATCGTACGT
GTAAAACATATCACCATCGTTGCTCGAACAGACTCTTCCCTCCGCATTGT
TCTTTGCCTGAGAAACTGAGGAGCAACCCGAGATCACACCACAGAGCTAC
CAGCACGGACGGTGCAATTCCGTCATTATTTTAATACTTCCGCAAAGTTC
CGTCTGGAGTTTTTCAATACGTTTCTTCTATGCCATGCTGCACGTTCCTC
ACCACTGCTGCTTCATGCGGTTGTCTCGACAATTCACAGGTTACCGGAGT
CGGGGGCGACGCAGAGGCCGCCCCCACCCCCGCCCCAGCCCCAACCGACG
CCCCCACCCCCTCCCCGGCCCCCGCCGACACACCCGAAAAGACAACTCCC
CCTCCTGCCGGCATCGGCATGCTCGCCGGCGCCATCCACAGCGTTGTGGG
CGGGGGCAGCAGCTCCTCGTCCAGCGGAACCGCCGCGGGGGGGGAGGCGC
CGCCGCCGCCGGCGGAGGCTGAAACTCCTGGAATAATCGGCAACCTGACT
TCCACGATCACCAACGCCGCACACAGCGTGACTGACGCGGCCGCCGGGAT
CGTTGGCGGCGGCAAGAAGGACGGCGCGGATGCTGCGGCGGTCGAAGTGA
CGTCGGTGCCGGCGGTGCCGGCGGTAGAGACACCAGAGGAGGGGAAGGAA
GGTAAATTTGCAGAAATGAGGCATCGACCTCTCTTGAGTGTTTCGCCACC
ACCGGCGGGACCTGTTACTATTTGGGGGACAGGGTTTCCCCCCAAGACGC
GTTACTATTTAGGTTGCTTGCGTTGAGATAAAGGATTCCCCCCGGGGGTG
CAGTGATCGCCACATCGGACTTCCTCCATACCCGATTACGTCACGACAGC
AGAAATACGCGGAACAAACACGCCTTCCGTGTTGCCGACCTCTCCCACGC
TCTCTCGATTTCCTGCGGTTGCGTTCCCGATCATGACGACTTGCGGGGCC
CCACACCGCACTCCCAAGTCGACAAGTCATCATGACTGCTTTGTGGGAAA
GGGAGCATATCTACTGCTGCATATCGAAACGTCGAAAATATGAGCAGAGA
ACGGGCGCATTTTGATAGACGAGACTCACCCTCTCCCGGCTGTTGCGTTA
TCCTTCGTGCCCGCACCTGCGCCACAGGGGGTGGGATCGGTGGCTTCCTC
TCCAACGTGACGCACACCGTGACGGATGGCGTCAAGGGAGCGATGGGCGC
CGTCAGGGACGAGATCCAGGCGGACATCAAGCCCTCTCTCAAGGACGACC
CTGCCCCAGCCGATGCCGCCGCTGACGCGGCGCCCGCGAAGTAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6460:4005..6650+

>mRNA_Ecto-sp13_S_contig6460.17238.1 ID=mRNA_Ecto-sp13_S_contig6460.17238.1|Name=mRNA_Ecto-sp13_S_contig6460.17238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6460:4005..6650+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTCATCAAAAAGGTTACCGGAGTCGGGGGCGACGCAGAGGCCGC
CCCCACCCCCGCCCCAGCCCCAACCGACGCCCCCACCCCCTCCCCGGCCC
CCGCCGACACACCCGAAAAGACAACTCCCCCTCCTGCCGGCATCGGCATG
CTCGCCGGCGCCATCCACAGCGTTGTGGGCGGGGGCAGCAGCTCCTCGTC
CAGCGGAACCGCCGCGGGGGGGGAGGCGCCGCCGCCGCCGGCGGAGGCTG
AAACTCCTGGAATAATCGGCAACCTGACTTCCACGATCACCAACGCCGCA
CACAGCGTGACTGACGCGGCCGCCGGGATCGTTGGCGGCGGCAAGAAGGA
CGGCGCGGATGCTGCGGCGGTCGAAGTGACGTCGGTGCCGGCGGTGCCGG
CGGTAGAGACACCAGAGGAGGGGAAGGAAGGGGGTGGGATCGGTGGCTTC
CTCTCCAACGTGACGCACACCGTGACGGATGGCGTCAAGGGAGCGATGGG
CGCCGTCAGGGACGAGATCCAGGCGGACATCAAGCCCTCTCTCAAGGACG
ACCCTGCCCCAGCCGATGCCGCCGCTGACGCGGCGCCCGCGAAGTAG
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