mRNA_Ecto-sp13_S_contig6459.17234.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6459.17234.1
Unique NamemRNA_Ecto-sp13_S_contig6459.17234.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6459.17234.1 vs. uniprot
Match: D7FUT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT3_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 3.790e-143
Identity = 227/254 (89.37%), Postives = 234/254 (92.13%), Query Frame = 1 
Query:    7 LRLRLARGELELVRRVLCQSRAILGEEVRRCTPAITTNNSDFERADSRAVTPAVANYSEATEMLVVQIMVPCGEFTEAVALVSSDAYLSPKDKSQLLKDCGHSASGRERESSAAAGQGTTGNVSNTAPDSRSPCGRSGPSHSSYREDYREETTGGPQRDGRTRLEHSPSPDEVGAAFCHQQRQQEQSPLQKFFSDVSDWTPEARVQLVVGAGAAGLAAYAALRNRDSLWRAARSAAGVAARTAGDVGAFIVGSS 768
            LRLRLA GELELVRR+L Q RA LGEEVRRCTPA+T NNSDFERA S AVTPAVANYSEATEMLVVQIMVPCGEFTEA ALVSSDAYLSPKDKSQLLK C  SAS RERES AA G+G+TGN SNTA  SRSPCGR GPSHSSYREDYREET GGPQRDGRTRLEHS SPDE+GAAFCHQQRQQ+QSPLQKFFSDVSDWTPEARVQLVVGAGAAGLAAYAALRNRDSLWRAAR+AAGVAARTAGDVGAFIVGSS
Sbjct:  146 LRLRLAGGELELVRRILWQLRAELGEEVRRCTPAVTANNSDFERAHSGAVTPAVANYSEATEMLVVQIMVPCGEFTEAEALVSSDAYLSPKDKSQLLKACEQSASERERESGAATGEGSTGNASNTASGSRSPCGRGGPSHSSYREDYREETKGGPQRDGRTRLEHSSSPDELGAAFCHQQRQQQQSPLQKFFSDVSDWTPEARVQLVVGAGAAGLAAYAALRNRDSLWRAARNAAGVAARTAGDVGAFIVGSS 399
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BLAST of mRNA_Ecto-sp13_S_contig6459.17234.1 vs. uniprot
Match: A0A6H5K3P0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P0_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 4.220e-130
Identity = 212/254 (83.46%), Postives = 222/254 (87.40%), Query Frame = 1 
Query:    7 LRLRLARGELELVRRVLCQSRAILGEEVRRCTPAITTNNSDFERADSRAVTPAVANYSEATEMLVVQIMVPCGEFTEAVALVSSDAYLSPKDKSQLLKDCGHSASGRERESSAAAGQGTTGNVSNTAPDSRSPCGRSGPSHSSYREDYREETTGGPQRDGRTRLEHSPSPDEVGAAFCHQQRQQEQSPLQKFFSDVSDWTPEARVQLVVGAGAAGLAAYAALRNRDSLWRAARSAAGVAARTAGDVGAFIVGSS 768
            LRLRLA GELELVR+ L Q RA+LGEEVRRCTP +T NNSDF+RADSRAVT A+ANYSEATEMLVVQI+VPCGEFTEAVALVSSD YLSPKDKSQLLK C  SAS RERES A AG+G TGN SNT   SRSPCGR GP HSSYR D REET GGPQRD RTRLE+  SPD +GAAFC QQRQQ+QSPLQKFFSDVSDWTPEARVQL V AGAAGLAAYAALRNRDSLWRAARS AGVAARTAGDVGAFIVGSS
Sbjct:  145 LRLRLAGGELELVRKNLSQLRAVLGEEVRRCTPTVTANNSDFQRADSRAVTQALANYSEATEMLVVQILVPCGEFTEAVALVSSDDYLSPKDKSQLLKACEQSASERERESGALAGEGATGNASNTPARSRSPCGRGGPLHSSYRGDCREETAGGPQRDRRTRLENLSSPDALGAAFCRQQRQQQQSPLQKFFSDVSDWTPEARVQLAVRAGAAGLAAYAALRNRDSLWRAARSVAGVAARTAGDVGAFIVGSS 398
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6459.17234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUT3_ECTSI3.790e-14389.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3P0_9PHAE4.220e-13083.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6459contigEcto-sp13_S_contig6459:7454..8224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size771
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001000.1
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.8163261-CDS-Ecto-sp13_S_contig6459:7453..82241681463891.8163261-CDS-Ecto-sp13_S_contig6459:7453..8224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6459 7454..8224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6459.17234.1prot_Ecto-sp13_S_contig6459.17234.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6459 7454..8224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6459.17234.1

>prot_Ecto-sp13_S_contig6459.17234.1 ID=prot_Ecto-sp13_S_contig6459.17234.1|Name=mRNA_Ecto-sp13_S_contig6459.17234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
LRLRLRLARGELELVRRVLCQSRAILGEEVRRCTPAITTNNSDFERADSR
AVTPAVANYSEATEMLVVQIMVPCGEFTEAVALVSSDAYLSPKDKSQLLK
DCGHSASGRERESSAAAGQGTTGNVSNTAPDSRSPCGRSGPSHSSYREDY
REETTGGPQRDGRTRLEHSPSPDEVGAAFCHQQRQQEQSPLQKFFSDVSD
WTPEARVQLVVGAGAAGLAAYAALRNRDSLWRAARSAAGVAARTAGDVGA
FIVGSS*
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mRNA from alignment at Ecto-sp13_S_contig6459:7454..8224-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6459.17234.1 ID=mRNA_Ecto-sp13_S_contig6459.17234.1|Name=mRNA_Ecto-sp13_S_contig6459.17234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6459:7454..8224- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAGGCTGCGTTTGCGGCTAGCAAGAGGAGAATTGGAGCTTGTTCGAAG
AGTCCTCTGTCAATCAAGGGCGATACTTGGTGAAGAAGTGCGGCGCTGCA
CGCCCGCGATAACCACCAACAACAGCGACTTCGAGAGGGCAGACAGTCGA
GCTGTAACACCAGCGGTGGCAAACTACTCGGAAGCGACGGAAATGCTGGT
CGTCCAAATAATGGTCCCTTGCGGAGAGTTCACCGAAGCCGTAGCACTTG
TTTCGAGCGACGCGTACCTCAGCCCTAAGGACAAGAGCCAACTTCTTAAA
GACTGCGGACATTCCGCGTCGGGGAGAGAAAGGGAGTCAAGTGCGGCAGC
CGGGCAAGGGACAACGGGGAATGTGAGCAACACGGCTCCTGACAGTCGCA
GCCCTTGCGGTCGTAGTGGCCCTTCGCATTCATCGTATCGGGAGGATTAC
AGAGAAGAAACTACAGGAGGGCCACAACGCGACGGACGCACACGATTAGA
ACACTCTCCGTCTCCAGACGAAGTAGGTGCAGCGTTTTGTCATCAACAGC
GGCAACAGGAGCAGAGCCCCTTGCAGAAGTTCTTCTCGGATGTCTCGGAC
TGGACGCCGGAAGCTCGTGTGCAACTGGTGGTGGGGGCAGGCGCAGCCGG
TCTGGCCGCGTACGCGGCGTTACGGAATCGAGATTCTCTTTGGCGGGCCG
CCCGTAGCGCCGCAGGCGTGGCGGCCCGAACGGCGGGTGATGTAGGAGCG
TTTATCGTTGGCTCGTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6459:7454..8224-

>mRNA_Ecto-sp13_S_contig6459.17234.1 ID=mRNA_Ecto-sp13_S_contig6459.17234.1|Name=mRNA_Ecto-sp13_S_contig6459.17234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6459:7454..8224- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAGGCTGCGTTTGCGGCTAGCAAGAGGAGAATTGGAGCTTGTTCGAAG
AGTCCTCTGTCAATCAAGGGCGATACTTGGTGAAGAAGTGCGGCGCTGCA
CGCCCGCGATAACCACCAACAACAGCGACTTCGAGAGGGCAGACAGTCGA
GCTGTAACACCAGCGGTGGCAAACTACTCGGAAGCGACGGAAATGCTGGT
CGTCCAAATAATGGTCCCTTGCGGAGAGTTCACCGAAGCCGTAGCACTTG
TTTCGAGCGACGCGTACCTCAGCCCTAAGGACAAGAGCCAACTTCTTAAA
GACTGCGGACATTCCGCGTCGGGGAGAGAAAGGGAGTCAAGTGCGGCAGC
CGGGCAAGGGACAACGGGGAATGTGAGCAACACGGCTCCTGACAGTCGCA
GCCCTTGCGGTCGTAGTGGCCCTTCGCATTCATCGTATCGGGAGGATTAC
AGAGAAGAAACTACAGGAGGGCCACAACGCGACGGACGCACACGATTAGA
ACACTCTCCGTCTCCAGACGAAGTAGGTGCAGCGTTTTGTCATCAACAGC
GGCAACAGGAGCAGAGCCCCTTGCAGAAGTTCTTCTCGGATGTCTCGGAC
TGGACGCCGGAAGCTCGTGTGCAACTGGTGGTGGGGGCAGGCGCAGCCGG
TCTGGCCGCGTACGCGGCGTTACGGAATCGAGATTCTCTTTGGCGGGCCG
CCCGTAGCGCCGCAGGCGTGGCGGCCCGAACGGCGGGTGATGTAGGAGCG
TTTATCGTTGGCTCGTCGTAG
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