mRNA_Ecto-sp13_S_contig6459.17233.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6459.17233.1
Unique NamemRNA_Ecto-sp13_S_contig6459.17233.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: D7FUT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUT2_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 2.480e-117
Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 624
            MGNK+SLENELINLRLTSKQQQR AIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK
Sbjct:    1 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 208
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A836C887_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C887_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.850e-73
Identity = 141/208 (67.79%), Postives = 162/208 (77.88%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 624
            MGNK+SLE ELINL+LT+KQ QRS+ KC K E AAKAK++ AI+ GN+EGA+I  QNAIREKNQSLN LRL+SRIDAVA+RLETA+RMKQV+KSM+            MDVERISKTMD FE+QFEDMDV AGYMEN+MG +TAMSTP +QVD LIQMVADE GLE+  QLDDAG V   VP    A PAAA    D+L+ RLA LRK
Sbjct:    1 MGNKVSLETELINLKLTAKQMQRSSTKCNKAEAAAKAKVKVAIQKGNMEGAKIAAQNAIREKNQSLNYLRLASRIDAVAARLETAVRMKQVDKSMQGVVKGMRKALKTMDVERISKTMDQFEKQFEDMDVVAGYMENSMGATTAMSTPADQVDQLIQMVADEHGLEVASQLDDAGKVGAAVPQ---AGPAAA----DDLSQRLADLRK 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A836CEV0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV0_9STRA)

HSP 1 Score: 235 bits (600), Expect = 4.970e-72
Identity = 138/208 (66.35%), Postives = 159/208 (76.44%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 624
            MGNK+SLE ELIN+RLTSKQ QR++ KC KNE +AK +++ +I+ GN+EGA+I  QNAIREKNQ+LN LRLSSRIDAV+SRLETAIR KQ+NKSME            MDVERIS TMD FE+QFEDMDV AGYMEN+MG +TAMSTP +QVD LIQMVADE GLE+G +LDDAG V   VPA    A    A E D LA RLA LRK
Sbjct:    1 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPA----AQQQPAQEVDALAQRLADLRK 204
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A7S2L033_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L033_9STRA)

HSP 1 Score: 216 bits (549), Expect = 2.070e-64
Identity = 123/207 (59.42%), Postives = 154/207 (74.40%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALR 621
            MGNKISLE+ELINLR+TSK   RS++KC K+E AA  +L++AIK GN EGARIY Q+AIREKNQ++N LR++SRIDAVA+RLETAIRM  VNKSM+            M++E +SKTMD FEQQFED+DV++GYME AM  +TA  TP +QVD LI+ VADE  LELG+   +AGPV   VP++P       A ++D+LA RLA LR
Sbjct:    1 MGNKISLEDELINLRITSKSMNRSSVKCKKSEKAALDRLKKAIKQGNTEGARIYAQDAIREKNQAVNHLRMASRIDAVAARLETAIRMDTVNKSMQGVVKGMSKGMASMNIEEMSKTMDKFEQQFEDLDVKSGYMEEAMNTTTATQTPADQVDHLIKYVADENQLELGDAFLEAGPVGTTVPSQPEKV----AADKDDLAARLANLR 203
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A7S1Z7S6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7S6_TRICV)

HSP 1 Score: 216 bits (549), Expect = 2.140e-64
Identity = 117/182 (64.29%), Postives = 139/182 (76.37%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVP 546
            MGNKISLE+ELINLR+TSKQ QRSA KC KNE AA  KL++AIK GN EGARIYGQ+AIREKNQ+LNC+R++SRIDAV+SR+ETA+RM QV  SM+            M++E++S TMD FE QFED+DV+  YME AM  +TA STP EQVD LI MVADE  LELG+   +AGPV  K P
Sbjct:    1 MGNKISLEDELINLRITSKQMQRSAKKCEKNEKAALEKLKKAIKQGNAEGARIYGQDAIREKNQALNCIRMASRIDAVSSRIETAVRMNQVTSSMKGVVKGMEKGLQSMNIEQLSATMDKFESQFEDLDVKTQYMEGAMNATTATSTPAEQVDELITMVADENNLELGDAFAEAGPVGKKAP 182
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A7S4MGQ3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MGQ3_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.620e-63
Identity = 125/207 (60.39%), Postives = 153/207 (73.91%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALR 621
            MGN +SLE+ELINLR+TSKQ QRSA KC KNE AA  KL++AIK+GN EGARIYGQ+AIREKNQ+LNC+R++SRIDAVASR+ETA+RM  V KSM+            M+VE+++ TMD FE QFED+DV+  YME AM  +TA +TP EQVD LI +VADE  L+LGE+  +AG V  K+     AAPA A   ED+L  RLA LR
Sbjct:    1 MGNSVSLEDELINLRITSKQMQRSAKKCEKNEKAAIEKLKKAIKSGNPEGARIYGQDAIREKNQALNCMRMASRIDAVASRIETAVRMNTVTKSMKGVVKGMDKGLASMNVEQMASTMDKFEAQFEDLDVKTQYMEGAMNSTTATTTPAEQVDELINLVADENNLDLGEEFAEAGTVG-KIKQPKEAAPAKA---EDDLEARLANLR 203
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A7S3JWC9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWC9_9STRA)

HSP 1 Score: 206 bits (525), Expect = 7.510e-61
Identity = 121/208 (58.17%), Postives = 154/208 (74.04%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 624
            MGNK+SL++ELINL++TS+Q   ++ KC K    AK ++++AI+ GN+EGARIY QNAIREKNQ+LN LR++SRIDAVA RLETAIR   ++K+M             MDVE+ISKTMD+FE+QFEDMDVRAGYMEN+M  STA +TP++QVD LI  VADE  L+L   LDDAG VS KVP +   +     G+ED LA+RL ALR+
Sbjct:    1 MGNKVSLQDELINLKITSRQMTSASKKCEKGARTAKNQVKKAIEKGNMEGARIYAQNAIREKNQALNYLRMASRIDAVAQRLETAIRTNDMSKAMGNVVKGMSSALKSMDVEKISKTMDAFEKQFEDMDVRAGYMENSMNASTASATPEDQVDSLISEVADEHQLDLSFALDDAGAVSTKVPQEQKQSE----GKED-LASRLDALRR 203
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A7S2GWE3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GWE3_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.490e-58
Identity = 116/206 (56.31%), Postives = 147/206 (71.36%), Query Frame = 1 
Query:    4 GNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALR 621
            G K +LE+ELINL++TSKQ QR A KC +NE AA  K+++AIK GN EGA+I+ Q+AIREKNQ+LNCLR++SRIDAVASRLETA+RM  +++SM             MDVE++++TMD FE QFED+DVR  YM++AM  +TA +TP +QVD LI MVADE  LELGE  ++AGPV  K P    A    A    D+L  RLA LR
Sbjct:    5 GKKPTLEDELINLKITSKQMQRQAKKCERNEKAAIEKVKKAIKQGNKEGAQIHAQDAIREKNQALNCLRMASRIDAVASRLETAVRMNSLSQSMTGVVRGMSTGLQSMDVEKMAQTMDKFESQFEDLDVRTQYMDDAMNSTTASTTPADQVDSLIHMVADENELELGEAFNEAGPVGKKTPQPTVAEETKAT---DDLEARLANLR 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A7S3HAK8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAK8_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.100e-58
Identity = 122/207 (58.94%), Postives = 142/207 (68.60%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALR 621
            MG K SLE++LI  RLTSKQ  RSA KC KN    K KL++AI+ GN+EGARIY QN IREKNQSLN LRL SRIDAVASRLETAIRM+ VNK+M             M+VE+I+KTM  FE+ FEDMDVR+GYME+ M  +T+M+TP E VD L++MVADEAGL+L  QLD  G  S    A        AA    EL  RLAALR
Sbjct:    1 MGQKHSLEDDLIQFRLTSKQMARSAKKCDKNMETQKNKLKKAIEQGNMEGARIYAQNVIREKNQSLNFLRLGSRIDAVASRLETAIRMQDVNKAMVMTVKGMSNAMKSMEVEQIAKTMQDFEKTFEDMDVRSGYMESTMDATTSMTTPPEDVDNLMRMVADEAGLQLAGQLDAPGTHSVATAAGQQQTAGPAADPASELEARLAALR 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Match: A0A7S2SCB7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCB7_9STRA)

HSP 1 Score: 199 bits (505), Expect = 6.820e-58
Identity = 120/207 (57.97%), Postives = 146/207 (70.53%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALR 621
            MGNKISLE+ELINLR+TSKQ QRSA K  KNE A   KL++AIK GN EGA+IYGQ+AIREKNQ+LNC R++SR+DAV+SR+ETAIRM +V+K+M+            M+VE +SK MD FE QFED+DV+A YME  M  +TA  TP EQVD LI MVAD+  L LG++  +  P S KVP      P A   E D L  RLA+LR
Sbjct:    1 MGNKISLEDELINLRITSKQMQRSAKKSEKNEKANIEKLKQAIKKGNSEGAKIYGQSAIREKNQALNCQRMASRVDAVSSRIETAIRMGEVSKTMKGVTKGMEKGLQAMNVEELSKIMDKFETQFEDLDVKAEYMEGTMNATTATITPAEQVDELIHMVADQNNLALGDEFTELVP-SKKVPQ-----PQAEEKEADSLEARLASLR 201
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6459.17233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUT2_ECTSI2.480e-11799.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C887_9STRA2.850e-7367.79Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CEV0_9STRA4.970e-7266.35Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2L033_9STRA2.070e-6459.42Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1Z7S6_TRICV2.140e-6464.29Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4MGQ3_9STRA1.620e-6360.39Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3JWC9_9STRA7.510e-6158.17Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2GWE3_9STRA1.490e-5856.31Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3HAK8_9STRA2.100e-5858.94Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2SCB7_9STRA6.820e-5857.97Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6459contigEcto-sp13_S_contig6459:4053..6194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score355.5
Seed ortholog evalue1.7e-95
Seed eggNOG ortholog2880.D7FUT2
Preferred nameCHMP1A
Model size1404
KEGG koko:K12197,ko:K16230
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000815,GO:0000819,GO:0000920,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005815,GO:0005856,GO:0006323,GO:0006355,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010824,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016363,GO:0016458,GO:0016787,GO:0019058,GO:0019068,GO:0019219,GO:0019222,GO:0019538,GO:0019904,GO:0019941,GO:0021549,GO:0022037,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030117,GO:0030163,GO:0030261,GO:0030496,GO:0030902,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032509,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034399,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042058,GO:0042059,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045177,GO:0045184,GO:0045324,GO:0045786,GO:0045892,GO:0045934,GO:0046605,GO:0046755,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048285,GO:0048475,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070013,GO:0070507,GO:0070727,GO:0070925,GO:0071103,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090169,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:0140096,GO:1901184,GO:1901185,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1902115,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904896,GO:1904903,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3232@2759
Ec32 ortholog descriptionSnf7 vacuolar protein sorting protein
Ec32 orthologEc-06_000990.1
Cds size627
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.762443-CDS-Ecto-sp13_S_contig6459:4052..43221681463891.762443-CDS-Ecto-sp13_S_contig6459:4052..4322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6459 4053..4322 +
1681463891.7754514-CDS-Ecto-sp13_S_contig6459:5060..54171681463891.7754514-CDS-Ecto-sp13_S_contig6459:5060..5417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6459 5061..5417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.7851698-UTR-Ecto-sp13_S_contig6459:5417..61941681463891.7851698-UTR-Ecto-sp13_S_contig6459:5417..6194Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6459 5418..6194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6459.17233.1prot_Ecto-sp13_S_contig6459.17233.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6459 4053..5417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6459.17233.1

>prot_Ecto-sp13_S_contig6459.17233.1 ID=prot_Ecto-sp13_S_contig6459.17233.1|Name=mRNA_Ecto-sp13_S_contig6459.17233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
MGNKISLENELINLRLTSKQQQRSAIKCTKNENAAKAKLREAIKAGNIEG
ARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEGVVK
GMESALKAMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQE
QVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELA
NRLAALRK*
back to top

mRNA from alignment at Ecto-sp13_S_contig6459:4053..6194+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6459.17233.1 ID=mRNA_Ecto-sp13_S_contig6459.17233.1|Name=mRNA_Ecto-sp13_S_contig6459.17233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2142bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6459:4053..6194+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAAACAAGATCTCTCTGGAGAATGAGCTCATCAACCTGAGACTGAC
CTCCAAGCAGCAGCAGAGGAGCGCTATCAAATGCACCAAGAACGAGAACG
CGGCGAAGGCCAAGTTGCGAGAGGCAATCAAGGCCGGCAACATCGAGGGA
GCCCGCATCTACGGCCAGAACGCGATTCGAGAAAAGAATCAAAGTTTAAA
TTGTCTACGTCTAAGTAGTCGAATAGATGCCGTGGCGTCGCGGCTCGAGA
CAGCGATCCGGATGAAGCAGGTGACCTTTCTCAAATTTTTTGATTTTCTG
TTCACGTGCGTACAGAGTTGGTTGAGTGGGCTCCCCGACGATACAACAGC
CATCGGGTCTTTCGACTTCTGTGGAGCCGGCAGTTAGTATTTGTACTTAA
ATTATGCTCAAACCCAAACGTTACACCGCCGTGTTCATTGCTTTGTTCCC
GCACCAAGACTTGTGCGTGAGCATTCCTTCGCTCCGTAACAGAGATTGAA
TGCATATGCATTCTTTGGTCCCTTCTTTTTCTGTGCTAAATCTGGGAGCG
TTGTCCGTAGAAAAGTGGACAGGCAGTGTAGGCGTCGTGAGATGTCTATT
AGTCGCAAGGACACGGCCCGTGTAGAGTTCAAAAACTAGAAACATTATTC
AACAAGGAGGATGAGCGCCCGATACGTTCCTCGTAGTCACGAAACGGAAT
TTACGCTGTTGTAATGAACCATGAAAGGACTGGTGATTCCTCAAAACAAA
ACTGGGTAGAATTATAGGGTGCGGCCTAATTTAAGGAAAGCGCCCAACTT
GGACTGCTGGGAAAAACAGCAAGACAAGCCGAATCGCACACTAACTTTGA
TGTTGCTTCTAGCGTGAAAAGCTGCCACACGTATGCGCACCGACAGCTTA
CGATGGCAACGATTCGGTGTTATGTGTACGAGCGGGTAGGCATCCACGCC
ACACTCAATAATTCACGACCCGCAACCACATTTCACACTCGTGTTCGATG
CGCGGTAGGTAAACAAGTCGATGGAGGGGGTGGTTAAGGGCATGGAGTCG
GCTCTCAAGGCAATGGACGTCGAGCGTATCTCGAAAACCATGGACAGCTT
TGAGCAGCAGTTCGAGGACATGGATGTACGGGCGGGGTACATGGAGAACG
CCATGGGCGACTCAACGGCGATGTCGACGCCCCAGGAGCAAGTGGACGGC
CTCATCCAGATGGTAGCCGATGAGGCTGGCTTAGAGCTGGGTGAACAGCT
GGACGACGCTGGCCCTGTGTCTAACAAGGTGCCCGCCAAGCCGGCGGCCG
CACCGGCGGCCGCGGCTGGCGAGGAGGATGAGCTGGCCAATAGGTTGGCC
GCCCTGCGCAAATGAGGACGTATCTCGTTTGCATTGATTGATAGGGCAGC
CATCCGTTGCGTATGGAAGGTGTGTCGTTTCGTGTTGGCTGTTTGCAGTA
TTTGGAAGAGTGAGCCCGCTACGTCGCTGTACTCACATTTTTGCTGACGT
AAAAATGTTGGTTGTGGTCCGCGGTTGGTGAGGCTACCCTGCCGGCTGCA
TACGTTTATAGAGTGAACCGTATCTCTTTTGCGAGAAGACATGAGACGGA
CGATAGATGGGCTCCTACAGCAGACTCGCATGCACCACAACCTTGCGAGT
TTCGTTTGTATTCTTTTGTTTTCTAGTACGTTGAAAGAGAGTCGAACACT
GCTGATTATTTAGCGGTGAAGTCAGCCACAGGGCGTGTCCGGTTGTTGTC
TTAGGATTGTCTTGGAGTAACCCGCTGAGGCATCGTTGATCATAGTATGC
GTAAGAACTGCCAGTTGCTGATATTTGAACTCTAGACTTCGTCGAAGGAT
GCCTACTGCAGCTCACGATTTTGAACGGTTGTTCAAGTAGAGTAGTTTTG
GTCTGTTGAACAGGTGGACCCGACAAACGAGCAATGGAACTCACGGGTCC
TGCCCCCGTGTAAATGATCGTTTTGACTTGATAGAGTACTGACTCCACCA
TGCGCATTTTGGGTCTACGACGACTTTTATTGTTCGTTCAATGATGGCAC
AGAGTATCCCGTATTGCTTCCCGCCCTCTTTTGTGTGTGTGTGTGCTTGT
CTGCTGATAAGCTTTTGTCATGGCCGTCGAGTCAGATTGAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6459:4053..6194+

>mRNA_Ecto-sp13_S_contig6459.17233.1 ID=mRNA_Ecto-sp13_S_contig6459.17233.1|Name=mRNA_Ecto-sp13_S_contig6459.17233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6459:4053..6194+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAAACAAGATCTCTCTGGAGAATGAGCTCATCAACCTGAGACTGAC
CTCCAAGCAGCAGCAGAGGAGCGCTATCAAATGCACCAAGAACGAGAACG
CGGCGAAGGCCAAGTTGCGAGAGGCAATCAAGGCCGGCAACATCGAGGGA
GCCCGCATCTACGGCCAGAACGCGATTCGAGAAAAGAATCAAAGTTTAAA
TTGTCTACGTCTAAGTAGTCGAATAGATGCCGTGGCGTCGCGGCTCGAGA
CAGCGATCCGGATGAAGCAGGTAAACAAGTCGATGGAGGGGGTGGTTAAG
GGCATGGAGTCGGCTCTCAAGGCAATGGACGTCGAGCGTATCTCGAAAAC
CATGGACAGCTTTGAGCAGCAGTTCGAGGACATGGATGTACGGGCGGGGT
ACATGGAGAACGCCATGGGCGACTCAACGGCGATGTCGACGCCCCAGGAG
CAAGTGGACGGCCTCATCCAGATGGTAGCCGATGAGGCTGGCTTAGAGCT
GGGTGAACAGCTGGACGACGCTGGCCCTGTGTCTAACAAGGTGCCCGCCA
AGCCGGCGGCCGCACCGGCGGCCGCGGCTGGCGAGGAGGATGAGCTGGCC
AATAGGTTGGCCGCCCTGCGCAAATGA
back to top