mRNA_Ecto-sp13_S_contig645.17217.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig645.17217.1
Unique NamemRNA_Ecto-sp13_S_contig645.17217.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 392 bits (1006), Expect = 2.120e-132
Identity = 206/212 (97.17%), Postives = 208/212 (98.11%), Query Frame = 3 
Query:    3 ASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAAAKPPPAR 638
            AST DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDV+DTSRYDLQPPQGAAAEDEAAWKRALDN RAQTEHQHN RLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAE+TLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEA AKPPPAR
Sbjct:   17 ASTPDALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDVIDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHN-RLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAVAKPPPAR 227
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A0A835YMV2_9STRA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV2_9STRA)

HSP 1 Score: 166 bits (419), Expect = 8.320e-45
Identity = 95/199 (47.74%), Postives = 131/199 (65.83%), Query Frame = 3 
Query:   15 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRF---KSPLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 602
            DAL YIDK+YDDPR +E+VH LIEEEMA F P +YL D+ +        K  +L +E ARV    P+  +D +RY+++ P GA AED  AW+ A+ N +AQ  HQ+N R LNLELL NYGA+ WL HNKA  G E+ + +  KR R+EA+ +N +R+ +Q    + LW+L R+R E  DKN+QI LA   L+ ++K+ K
Sbjct:    9 DALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYN-RQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYK 206
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A0A1Y1W5F2_9FUNG (Breast carcinoma amplified sequence 2 n=2 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W5F2_9FUNG)

HSP 1 Score: 119 bits (299), Expect = 1.180e-27
Identity = 82/202 (40.59%), Postives = 116/202 (57.43%), Query Frame = 3 
Query:    3 ASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKS-PLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKA 605
            ++  D+L YIDK+YDDP M++ V SLI++EM    PP      P  TT FK+  LL+ E+ RVRA KPL   D  RY L+ P+ +  +    W+ A +N  AQ EHQ N RL+NLELLQ +GA+ W   N  +EG    +     R R+E   VN  RK  Q  A   L ++  + +EG  K ++IQ+A   L+ E+ +L+A
Sbjct:    5 SAAIDSLPYIDKEYDDPSMRDQVSSLIQKEMGRMSPPLL----PKSTTLFKNNDLLRKEYERVRAGKPLPEFDIERYKLEAPEDS--DSVGIWRSAAENAAAQLEHQ-NIRLVNLELLQQFGANSWKLSNYQKEGLLRNIEKATDRHRDEGINVNKARKYEQTEAGIRLRDIEERWTEGVKKCIEIQVASSELKGEIAQLEA 199
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A0A5J4YGH3_9CHLO (Pre-mRNA-splicing factor SPF27 protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGH3_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 2.330e-27
Identity = 81/204 (39.71%), Postives = 123/204 (60.29%), Query Frame = 3 
Query:    3 ASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAF--EPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 602
            A   DAL YID    D R +     LI+EE+     +P DYLA   PLP +RF+  P+L+ E+ARV+A K ++ MDTSR+ L PP  +   D +AW+ A DN  +Q EHQ+N RLLNLELL  +G +    HNK+ EG    +  + ++ +++ + +N +RK SQE+  R L  + ++ +    KN++I +AC+ L +EV  L+
Sbjct:   17 AGVIDALPYIDGMTSDDRHQ--AEELIKEELKKSNKKPSDYLASFPPLPASRFEGHPILQHEFARVKAGKQMEAMDTSRFHLTPPPASKQNDFSAWRAATDNAHSQLEHQYN-RLLNLELLLRFGPNARRVHNKSLEGQVHRLEKEIEQLQQQKDSINRQRKLSQESDGRALQQMEQQYTALVAKNMEINMACQELESEVSELQ 217
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A9SH09_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SH09_PHYPA)

HSP 1 Score: 119 bits (299), Expect = 3.240e-27
Identity = 84/202 (41.58%), Postives = 119/202 (58.91%), Query Frame = 3 
Query:    9 TADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 602
            T DAL YID DY DP++K  V  +I EEM  ++ +P D+LA+  P+P+   +  P+L  E+ RVRA K    +D SRY L+PP      D  AWK A+ N +AQ +HQ   RL NLEL+ NYG + W+ HN+  E  +A +   A   + E E +N +RK +Q+AA   L  L+ +  E   KN+ I+ AC  L AEV +L+
Sbjct:   31 TVDALPYIDHDYADPKVKAEVDKMIAEEMRLSSKKPSDFLAELPPVPSINAQDHPMLAKEFDRVRAGKAPVALDLSRYGLEPPPVNKRNDVGAWKSAVQNAKAQLQHQ-TLRLENLELMLNYGTTAWIVHNQHLEAFQARLRDTALEYQREIEILNRERKLNQQAAAVELNLLSSQWKEISQKNLDIEEACLKLEAEVLKLR 231
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: UPI001FB0803B (pre-mRNA-splicing factor SPF27 homolog n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0803B)

HSP 1 Score: 118 bits (296), Expect = 1.050e-26
Identity = 85/211 (40.28%), Postives = 121/211 (57.35%), Query Frame = 3 
Query:    3 ASTADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAAAK 623
            A   DAL YID DY DPR+K+ V  L+EEEM  ++ +P D+L D  PLP + F++ P+L  E+ RVRA KP   +D SRY L+ P      DE AWK+AL   +   +HQ   RL NL+L+  YG+ +W  HN+  E   + V ++     E+ E VN +RK  Q+ A   L  L+ +  E   KN++IQ AC  +   V+ +K  EAA +
Sbjct:   29 AEMMDALPYIDDDYGDPRVKDEVDRLVEEEMRRSSKKPSDFLKDLPPLPNSNFENHPMLAREYERVRAGKPPVPLDMSRYGLETPSVNKRNDETAWKQALQKAQRLLQHQV-IRLENLDLISKYGSDVWKLHNQRLEVLLSRVQAETAEINEKIEVVNRERKYQQQNASYELNALSAQWKELCQKNIEIQAACATIENHVEEMKR-EAAER 237
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A0A7J7P6K5_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P6K5_9MAGN)

HSP 1 Score: 117 bits (293), Expect = 3.360e-26
Identity = 82/207 (39.61%), Postives = 123/207 (59.42%), Query Frame = 3 
Query:   15 DALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAAAK 623
            DAL YID DY DP++KE V  LIEEEM  +  +P D+L D  PLP + F++ P+L  E+ RVRA KP   MDTSRY L+PP      D  AWK+ L+N ++  +HQ   RL NL+L+  + A +W  +N+  E   + + + A+   ++ E VN +RK  Q+     L  ++ + +E   KN++IQ AC  +   +++LK  EAA +
Sbjct:   26 DALPYIDDDYSDPKVKEKVDRLIEEEMRKSTKKPSDFLKDLPPLPKSNFENHPMLAREYERVRAGKPPTTMDTSRYGLEPPPVNKRNDPNAWKQHLENAQSSLQHQV-IRLENLDLMSKHVADVWKHYNQRLEAFLSRIYAMARGYNDDIETVNRERKYHQQNTAVELDAMSAQWNELCKKNIEIQTACASIENYIEKLKR-EAAER 230
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A0A1C7N7I1_9FUNG (Pre-mRNA-splicing factor SPF27 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N7I1_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 1.270e-25
Identity = 76/197 (38.58%), Postives = 113/197 (57.36%), Query Frame = 3 
Query:   15 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRF-KSPLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 602
            DAL Y+D+D +D  +K  V  +IE+EM   +  +  +  PL    F K+ LLK E  RV  ++PLDV+DT RY+LQ P+     D   WK A++N ++Q E Q  S + NLELLQ YGA+ W  HN   E     +    ++ R++   VN +RK  Q  A  +L +L  K S+   +N+Q+++AC  L AEV+ L+
Sbjct:   17 DALPYVDRDINDENLKTQVERMIEQEMRRMKRTER-SSLPLTANLFEKNSLLKQELERVEKKEPLDVLDTKRYELQGPEDE--NDIEGWKAAVNNTKSQLESQAGS-MFNLELLQKYGANAWRVHNYQLEADLKTIQRNTEQVRQQILEVNRERKQDQTQAAASLQSLENKWSDLISQNLQVEIACAALEAEVQELR 209
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A0A1D1Z9L4_9ARAE (Pre-mRNA-splicing factor SPF27 (Fragment) n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z9L4_9ARAE)

HSP 1 Score: 115 bits (289), Expect = 1.370e-25
Identity = 83/204 (40.69%), Postives = 122/204 (59.80%), Query Frame = 3 
Query:    3 ASTADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 602
            A T DAL YID++Y DPR+KE V  L+EEEM  +A +P D+L D  P+P   F+  P+L  E+ RVRA KP   +D SRY L+PP+     D AAW+ A+ N ++  +HQ   R+ NLEL+  +G  +W  H K  E   A + + A    E  E VN +RK  Q+     L +LA +  E  +KN++I++AC  L++ +++LK
Sbjct:   47 ADTIDALPYIDEEYGDPRVKEEVDRLVEEEMRRSAKKPADFLRDLPPMPKFNFEDHPMLAREYERVRAGKPPVALDMSRYGLEPPK---RNDVAAWRHAVKNGQSLLQHQI-IRIENLELMLKHGVDVWKLHIKRLEALLARMQAIALGYNERIEVVNRERKFHQQNTAVQLNSLASQWRELCEKNIEIEVACANLQSHIEQLK 246
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BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Match: A0A168QXJ6_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QXJ6_ABSGL)

HSP 1 Score: 114 bits (285), Expect = 1.630e-25
Identity = 76/197 (38.58%), Postives = 110/197 (55.84%), Query Frame = 3 
Query:   15 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKS-PLLKSEWARVRAEKPLDVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 602
            D+L YID++ DDP MK  V  LIE+EM   +  +  +  PL    F++ P+L  EWARV  + PL  +D +RY+LQ P+     D  AWK+A+DN +AQ E Q  S + NLELLQ YG + W  HN   E     +  + +R R E   +N +RK  Q  A   +  L  K S+   +N+Q+ + C  L +EV+ L+
Sbjct:   22 DSLPYIDREIDDPDMKASVDRLIEQEMRRMKRKER-STLPLSIDLFQNDPVLSQEWARVSKQTPLTALDETRYELQGPESETDVD--AWKKAVDNTKAQLESQAGS-MFNLELLQKYGPNAWPVHNFQLEAYLKQIKQETERYRNEINEINRERKYDQTQAAAAIQALENKWSDLISQNLQVGVGCAALESEVEELR 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig645.17217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2U2_9PHAE2.120e-13297.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMV2_9STRA8.320e-4547.74Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema m... [more]
A0A1Y1W5F2_9FUNG1.180e-2740.59Breast carcinoma amplified sequence 2 n=2 Tax=Lind... [more]
A0A5J4YGH3_9CHLO2.330e-2739.71Pre-mRNA-splicing factor SPF27 protein n=1 Tax=Tre... [more]
A9SH09_PHYPA3.240e-2741.58Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
UPI001FB0803B1.050e-2640.28pre-mRNA-splicing factor SPF27 homolog n=1 Tax=Imp... [more]
A0A7J7P6K5_9MAGN3.360e-2639.61Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
A0A1C7N7I1_9FUNG1.270e-2538.58Pre-mRNA-splicing factor SPF27 n=1 Tax=Choanephora... [more]
A0A1D1Z9L4_9ARAE1.370e-2540.69Pre-mRNA-splicing factor SPF27 (Fragment) n=2 Tax=... [more]
A0A168QXJ6_ABSGL1.630e-2538.58Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig645contigEcto-sp13_S_contig645:2455..6292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score356.3
Seed ortholog evalue9.1e-96
Seed eggNOG ortholog2880.D8LQA4
Preferred nameBCAS2
Model size1519
KEGG koko:K12861,ko:K13336,ko:K20161
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko03040,ko04146,map03040,map04146
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009870,GO:0009987,GO:0010204,GO:0010467,GO:0015630,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0045292,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0080134,GO:0090304,GO:0098542,GO:1901360,GO:1902494,GO:1990904
Exons3
EggNOG free text desc.mRNA processing
EggNOG OGsKOG3096@1,KOG3096@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005540.1
Cds size585
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463890.8310354-UTR-Ecto-sp13_S_contig645:2454..33321681463890.8310354-UTR-Ecto-sp13_S_contig645:2454..3332Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig645 2455..3332 -
1681463890.8753738-UTR-Ecto-sp13_S_contig645:6236..62921681463890.8753738-UTR-Ecto-sp13_S_contig645:6236..6292Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig645 6237..6292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463890.843333-CDS-Ecto-sp13_S_contig645:3332..35451681463890.843333-CDS-Ecto-sp13_S_contig645:3332..3545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig645 3333..3545 -
1681463890.8534422-CDS-Ecto-sp13_S_contig645:4376..44761681463890.8534422-CDS-Ecto-sp13_S_contig645:4376..4476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig645 4377..4476 -
1681463890.8661695-CDS-Ecto-sp13_S_contig645:5964..62361681463890.8661695-CDS-Ecto-sp13_S_contig645:5964..6236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig645 5965..6236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig645.17217.1prot_Ecto-sp13_S_contig645.17217.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig645 3333..6236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig645.17217.1

>prot_Ecto-sp13_S_contig645.17217.1 ID=prot_Ecto-sp13_S_contig645.17217.1|Name=mRNA_Ecto-sp13_S_contig645.17217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
MKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPL
DVMDTSRYDLQPPQGAAAEDEAAWKRALDNVRAQTEHQHNSRLLNLELLQ
NYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAERTL
WNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAAAKPPPAR*
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mRNA from alignment at Ecto-sp13_S_contig645:2455..6292-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig645.17217.1 ID=mRNA_Ecto-sp13_S_contig645.17217.1|Name=mRNA_Ecto-sp13_S_contig645.17217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3838bp|location=Sequence derived from alignment at Ecto-sp13_S_contig645:2455..6292- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCTTCGACCGCGGACGCGTTGTCGTACATCGACAAAGACTACGACGAC
CCACGGATGAAGGAGATCGTGCACTCCCTCATCGAGGAGGAGATGGCCGC
CTTCGAGCCCCCGGACTACCTCGCGGACAAGCCCTTGCCCACGACGCGGT
TCAAGAGCCCGCTGCTGAAGTCGGAGTGGGCTCGCGTCAGGGCCGAGAAG
CCCTTGGATGTCATGGACACTTCGCGGTACGACCTCCAGCCTCCACAGGG
CGCCGCTGCAGAGGACGAGGCGGCGTGGAAGCGGGCCTTGGACAACGTGC
GAGCGCAAACGGAGCACCAACACAATAGGTACCTACATAGGTTGCAGCCC
TCTCCCATACGACTGTAATGTGGAGTCCATCCCATCCAAGTGTGGTGTGG
AGTGTGCGATAATGTCGTTGGTGAAAGATCTCGTGTAAATGGTTGAACGG
GGGGCGCTTGCGTTGCTTGGTGTGTACCGGATACTGCAGCCCAGGCTGTT
GTGCACCTCTGACAGAGCTCTGCTGCCTGCTGTTGTTGCCGACGAGGTGT
GGTAGTGCGAGGTGTTCTGTCAGGTCGCTCTCGGCGATCTTCCGGCGCTG
TCCGCCACCGGCACAGGATCAATCATAGGCGTACCATTGCCGCGGAGACG
TTGGCCTTGGAACCGATGTCAGGGGCGGGGGGGGGAGGGTGTCCGCTGCA
ATTTGTTATATACGTGCTGGAGATCGGCCATGCCGGTGATACGCAAAGTC
TACTGTTGAGGGAGCCGTTCAAGCGGCAATACCCTTCAAAGATTGTGTAT
TCTGGCAGTTCCACCAGTGATTCCCTTATTTGCTACCCGAACCTTCGCTT
GCACCCGGCTTTCTGTGATTTGGAGGCGTCCTTCGTTCGCTTTAGCCTCC
CCTCGATCCGTCCATCAAATCTTTTGAGACACATTATCCTGGCGCCATTG
GTGCAAACCGACATCGTGGTCGGGTCGATTACAACGTCGTCAAAAGGAAA
ACTGATCTCTTCCGCTCGCGGCGTGCGAGCTTGTGTTTTGTTGGTACGTG
GCTCGTCGTTGTTCTGGCTTTTCCCCGCTTACCATTCTTTGCCAATGTCG
ACGAAAGCGCCGTCCACGTATCTGTGCTGTTTGGAAAGCTCGGTAGATTG
CCGTGGGGCGACGACGCTTGTAGCGAAGGAGGTGTCTTGGCAATCCCCAC
GCGGTGCGCTTCATTGCACACGTGTGAAGACGTGCAGCCATGTCTTAGCT
GTCAGTGAAGAAACTCGGTCATCTTCACCGACAGCTTGGAACCCGCAAGG
CTGACGGTCTTTCGTGCTTTCTCTCGGAATGGGCGCTGGCACCCTCTTGG
GGTCCCCAGCGCACCCAAGGGCGACCCTCCACGGAGGCTTGAGCATGTAA
AAGCCGGGGCAATTGAGCGCACCATGTGGGCATCTTCAAACATTCCTTCG
CTAAGCATCGTCACCCCGTGGCGTCCCAACGAGCTCTGCTGCTGCTGGAT
GGAGGAGGTCGCAACCTGCTTGGACGTACTGCTCCGGCACGCTTCGTTCG
TCAGGAGTACTGTACGGCACGGACACACCAAGCACCATCCATCGCTTGCG
GTCATCATAGTTGGGAGAATTTATTATATGTACTGCTGTATGGCACGGGT
ATGAATACAATTTTAGTCCCCCTACAACGGCCTCTGCACAGGGCCCAAAT
ACAACGACGGCGCTGCTGTGTTTAGTGTCGGTTGTTCTGCCTGCGCCTCC
TCACTCACACTCGTATCCATGCCCTGCACACGACATCTCGAACCGGTGTG
TCCATTCGCCGAGGAGCAGATTGCTGAACTTGGAGCTGCTGCAGAACTAC
GGCGCTAGCATGTGGCTGGGCCACAACAAGGCGGAGGAGGGGACGGAGGC
AGCGGTGGCATCGCAGGTGGGGTGCTGTTGCTCGTGGCCGTCGCTGTTTC
TGTGGTCACGTTTGAAGGTCATTTGGTACGGCCCAAGGGTATGAATGATC
GTACATTACATGCCAGGGAGCGTGCAGTTTTTTTCTCAGCGAGCTACCTT
CGTAACAATTGGCATGATACCCGACACAGTTGTGTACCTGTGCGCTTGCC
AAGCTCCTTCTTTCCCCAACCCACGCTCTGTCTGGTAAGAAACAATGGGC
TTGAGATCGAGCTCGGCCCGCCCCCGAGCTATGCGACAGCATTATTGCAC
AGAACGATCGGCATACTGTACGTAAAATGTCGGGGCTATTGTTGCGGTAC
AGTACGTCGTTGGAAGCACGCGGGCTTGCTTGCATTTTGTCAGCCGTGGC
TCGGAATCGGAAGAAGCCCCCAAGTGTCGGTGGCTCTGTAGGGAGCAAGG
ACAGTGTTCCATCGCTCAATCGAAAAATGAATGTATGTGACGTGAGGGCT
CGTCCTCGACAAACATTGGGGAGGCGTGTTTCCTTTTCAAACGATGTCTC
CGCTGTGGTGTGACGTGATTTGACTCTACGCGGTGACATTGAATAATGGA
AGCACACCAACAAGGCGGCTGTATAGGTCGTGCAATCTTGCCGTGACAGC
TAAATACTTGTTGGCCCCTAGCGGACTGATTTGAATTACTATTTCGGTCT
CCCCGCGTTGTTTCGATGATGGTGCTTATGTTGGGACGAGTCTCTTGTCC
TGCTCTTTCTTACAACACACAGTTTCGAGGACTCTACTGGTATGTCATGC
ATGATCCTGCGTCACCCCTTACCGCACTTCCCGCCCCCCCCGTGCAGGCG
AAACGGGCTCGCGAGGAGGCGGAGAGGGTCAACCTAAAGCGAAAGACTTC
GCAGGAGGCGGCGGAGAGGACCTTGTGGAACCTGGCGCGAAAACGATCAG
AGGGTTTTGACAAGAACGTGCAGATTCAGCTGGCGTGCGAGGGGTTGAGG
GCGGAAGTGAAGCGCTTGAAGGCTTTGGAGGCCGCGGCGAAACCACCACC
AGCACGATGATTTTTGTAGGGGAAATCCACTGGTGGGGGGGGAGGAGGTT
GCCTTGCGTGGCATGCCTTCGTGTCTGGCTTGTGACCACCGACTGAGTTT
CTGTGGGGTAGCACCTGAGAAATAGCAACGTGGTTGGGATAAGTGTCGTG
CTTTGTCGGGACTCGGAAAAATGGTCCGCTACGGTGGTGTTGCGGCAACG
GAATGTTGGCATGTTGAGCGCGAGTGTGAGACTACATGGTAGGGAGTCTA
GTCCTCAGTTTTAGTATTTTTAGCCACCTGTTGTAGATGCACCGTGCAAA
GCGCAACACACGAGAAGAAGGAAAGGAGGCTTTGGCGTCGAAGTTAGGAC
AAGACGGCGGATTATCGTGCAGGATGTGTTGCACGCAATGTTGGCGTGGA
AGCTGGGGCGATCTGATCTGTTCCGTGGTTGTTGTGCAGTAATACAGTGC
ACGTCACGTCAGTCGCACCGGGCGTAAGACGCCGTGGATGAGTGAGATGC
TCCTGTGAGCAAGATTCCTCGCATGCTGTTAACGCATGACGCACACTGTA
GGCAAGTCAGGCGGAGTTGCATATTCTCCCGCTCACCTTGACCCAAGCCA
CTTTGTTTCACACGTATTCAAAGGAGTGCTTTTTGCGCGCTCTCTTGTGT
TGCTTTTTCCCCGTGACCAACCTCTGAATATTGCTTTTTCCACCATCCGG
TACGAACCGTACCGTCGAGAGTAGACATGATACGTCGCGGGGAGTTGAAC
CGTTTCGATTTTGCAGCAGCATGAACGCAACAACTTTCCCTTGTAGTTTC
GGGAGCAACCCTCGCAAGCACGAGCACTAGCTGACGGAAAGTGTTCTTTT
GGATCTACATGGCTATTGGACGAAGAAAACGGTGATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig645:2455..6292-

>mRNA_Ecto-sp13_S_contig645.17217.1 ID=mRNA_Ecto-sp13_S_contig645.17217.1|Name=mRNA_Ecto-sp13_S_contig645.17217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig645:2455..6292- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAGATCGTGCACTCCCTCATCGAGGAGGAGATGGCCGCCTTCGA
GCCCCCGGACTACCTCGCGGACAAGCCCTTGCCCACGACGCGGTTCAAGA
GCCCGCTGCTGAAGTCGGAGTGGGCTCGCGTCAGGGCCGAGAAGCCCTTG
GATGTCATGGACACTTCGCGGTACGACCTCCAGCCTCCACAGGGCGCCGC
TGCAGAGGACGAGGCGGCGTGGAAGCGGGCCTTGGACAACGTGCGAGCGC
AAACGGAGCACCAACACAATAGCAGATTGCTGAACTTGGAGCTGCTGCAG
AACTACGGCGCTAGCATGTGGCTGGGCCACAACAAGGCGGAGGAGGGGAC
GGAGGCAGCGGTGGCATCGCAGGCGAAACGGGCTCGCGAGGAGGCGGAGA
GGGTCAACCTAAAGCGAAAGACTTCGCAGGAGGCGGCGGAGAGGACCTTG
TGGAACCTGGCGCGAAAACGATCAGAGGGTTTTGACAAGAACGTGCAGAT
TCAGCTGGCGTGCGAGGGGTTGAGGGCGGAAGTGAAGCGCTTGAAGGCTT
TGGAGGCCGCGGCGAAACCACCACCAGCACGATGA
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