mRNA_Ecto-sp13_S_contig6438.17199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6438.17199.1
Unique NamemRNA_Ecto-sp13_S_contig6438.17199.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.680e-35
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:  351 DFRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPK 545
            +FRRLWIERINAGVRQHGM YSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPK
Sbjct:   50 EFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPK 114
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A085L091_9FLAO (50S ribosomal protein L20 n=2 Tax=Schleiferia thermophila TaxID=884107 RepID=A0A085L091_9FLAO)

HSP 1 Score: 89.4 bits (220), Expect = 7.750e-20
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:  351 DFRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 527
            +FR LWI RINAG RQHGMSYSVF+NK + A+++LNRKVLA++A+  P +FRAVVE VK
Sbjct:   56 NFRSLWIMRINAGARQHGMSYSVFINKLKNANIDLNRKVLADLAMNHPEAFRAVVEKVK 114
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A7S2PHZ4_9STRA (50S ribosomal protein L20 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PHZ4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.010e-20
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:  351 DFRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 527
            +FR+LWIERINAGVRQHGMSYS F+N +  +  ELNRKVLA+MA  EP+SF+AVV+ VK
Sbjct:   60 NFRKLWIERINAGVRQHGMSYSKFINGSMHSGCELNRKVLADMASNEPFSFKAVVDVVK 118
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A812NSR7_9DINO (RplT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NSR7_9DINO)

HSP 1 Score: 90.5 bits (223), Expect = 9.250e-20
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 3 
Query:  330 GPLLNDPDFRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKG 536
            G  L   D R+LWI ++NAG++QHG  YS F++ A  +DV LNRKVLA++A+TEPYSF+AVVETV+A G
Sbjct:   40 GRKLKKRDMRKLWITQVNAGLQQHGFRYSDFIHSAALSDVALNRKVLAQLAITEPYSFKAVVETVRATG 108
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: R6P7I3_9CLOT (50S ribosomal protein L20 n=2 Tax=Terrabacteria group TaxID=1783272 RepID=R6P7I3_9CLOT)

HSP 1 Score: 89.0 bits (219), Expect = 1.150e-19
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 3 
Query:  354 FRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 533
             RRLWI RINA VRQHG+SYS F+N  +KAD+++NRK+LAEMAV EP +F  VVET KAK
Sbjct:   56 MRRLWIVRINAAVRQHGLSYSKFMNALKKADIQVNRKMLAEMAVNEPEAFSVVVETAKAK 115
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A7S2PGZ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PGZ0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.930e-19
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:  351 DFRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 527
            +FR+LWIERINAGVRQHGMSYS F+N +  +  ELNRKVLA+MA  EP+SF+AVV+ VK
Sbjct:   94 NFRKLWIERINAGVRQHGMSYSKFINGSMHSGCELNRKVLADMASNEPFSFKAVVDVVK 152
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A7S0C6M4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C6M4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.000e-19
Identity = 40/64 (62.50%), Postives = 56/64 (87.50%), Query Frame = 3 
Query:  351 DFRRLWIERINAGVRQHGMSYSVFVNKARKADV-ELNRKVLAEMAVTEPYSFRAVVETVKAKGS 539
            D RRLWIERINAGVRQHG+SYSVF+NK RK+ V +++RK++A++A+ EP+SF+A+V+ +K K S
Sbjct:  112 DMRRLWIERINAGVRQHGLSYSVFMNKWRKSGVFDVDRKIMADLAMNEPFSFKALVDVIKMKTS 175
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A2R5GTP0_9STRA (50S ribosomal protein L20 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTP0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.350e-19
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 3 
Query:  351 DFRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKA 530
            D R LWI+++NAGV +HGMSYS FV++  ++ VELNRKVLA+MA+TEP+SFRA+VE  KA
Sbjct:   48 DARTLWIQQVNAGVGEHGMSYSNFVHQLNQSKVELNRKVLADMAITEPFSFRAIVELCKA 107
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A352XFB9_9CYAN (50S ribosomal protein L20 n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352XFB9_9CYAN)

HSP 1 Score: 87.0 bits (214), Expect = 6.820e-19
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 3 
Query:  351 DFRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKG 536
            DFRRLWI RINA VRQHGMSYS F+ K +KAD+++NRK+LA++AV +P SF  VVE     G
Sbjct:   56 DFRRLWITRINAAVRQHGMSYSQFIGKMKKADIQINRKMLAQLAVLDPASFHKVVELAAKAG 117
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BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A3M1TS05_9BACT (50S ribosomal protein L20 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1TS05_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 8.640e-19
Identity = 37/59 (62.71%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:  351 DFRRLWIERINAGVRQHGMSYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 527
            +FR+LWI+RINA  RQHGMSYS F+ K +KA VELNRKVLA++A+ +P +F+A+V+ VK
Sbjct:   56 EFRKLWIQRINAAARQHGMSYSAFMGKLKKAGVELNRKVLADLAMNDPAAFKAIVDAVK 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI1.680e-3596.9250S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
A0A085L091_9FLAO7.750e-2067.8050S ribosomal protein L20 n=2 Tax=Schleiferia ther... [more]
A0A7S2PHZ4_9STRA8.010e-2069.4950S ribosomal protein L20 n=1 Tax=Leptocylindrus d... [more]
A0A812NSR7_9DINO9.250e-2059.42RplT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
R6P7I3_9CLOT1.150e-1968.3350S ribosomal protein L20 n=2 Tax=Terrabacteria gr... [more]
A0A7S2PGZ0_9STRA1.930e-1969.49Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0C6M4_9STRA4.000e-1962.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A2R5GTP0_9STRA5.350e-1965.0050S ribosomal protein L20 n=1 Tax=Hondaea fermenta... [more]
A0A352XFB9_9CYAN6.820e-1962.9050S ribosomal protein L20 n=1 Tax=Cyanobacteria ba... [more]
A0A3M1TS05_9BACT8.640e-1962.7150S ribosomal protein L20 n=1 Tax=Bacteroidetes ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6438contigEcto-sp13_S_contig6438:31..2499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score88.6
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D7G284
Preferred namerpl20
Model size545
KEGG koko:K02887
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categorymitochondrion
Exons4
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0292@1,KOG4707@2759
Ec32 ortholog description50S ribosomal protein L20
Ec32 orthologEc-16_002100.1
Cds size342
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463889.3554502-UTR-Ecto-sp13_S_contig6438:30..1111681463889.3554502-UTR-Ecto-sp13_S_contig6438:30..111Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6438 31..111 -
1681463889.3709116-UTR-Ecto-sp13_S_contig6438:934..10491681463889.3709116-UTR-Ecto-sp13_S_contig6438:934..1049Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6438 935..1049 -
1681463889.3816352-UTR-Ecto-sp13_S_contig6438:1449..14561681463889.3816352-UTR-Ecto-sp13_S_contig6438:1449..1456Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6438 1450..1456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463889.3918793-CDS-Ecto-sp13_S_contig6438:1456..15621681463889.3918793-CDS-Ecto-sp13_S_contig6438:1456..1562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6438 1457..1562 -
1681463889.4016712-CDS-Ecto-sp13_S_contig6438:2263..24991681463889.4016712-CDS-Ecto-sp13_S_contig6438:2263..2499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6438 2264..2499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6438.17199.1prot_Ecto-sp13_S_contig6438.17199.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6438 1457..2499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6438.17199.1

>prot_Ecto-sp13_S_contig6438.17199.1 ID=prot_Ecto-sp13_S_contig6438.17199.1|Name=mRNA_Ecto-sp13_S_contig6438.17199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MSWSTVLGRVRPQALWTSLVRPGCSSVARHRGGGLGAAVGGSSGSPQWPC
DALGQHQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQ
QAYRDRKARKGRC*
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mRNA from alignment at Ecto-sp13_S_contig6438:31..2499-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6438.17199.1 ID=mRNA_Ecto-sp13_S_contig6438.17199.1|Name=mRNA_Ecto-sp13_S_contig6438.17199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2469bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6438:31..2499- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTGGTCAACCGTTCTAGGCAGGGTGAGGCCGCAAGCACTGTGGAC
GTCTCTTGTGAGACCAGGATGCTCATCGGTGGCGAGGCATCGTGGAGGGG
GGCTGGGAGCTGCTGTAGGCGGCAGCAGCGGCTCGCCACAATGGCCGTGC
GATGCGCTCGGTCAGCACCAGCAGCAGTGCCGTGGCATGGCAGCGAACAA
CCACAGGCATAAAAAAATCCTCAAGTTGGCGAAAGGGTGAGTGGTTCCCT
GTTGTGCCCGGGACATGTAGGCGTGCTGGTGTGAGAACCCTCGTCACCAA
CATGACGGAACGCACACACAAGCAGGTACATCTGTCACCGAACTGCGTTG
CCATGCCCGGTACGCGAAGGTATAGTCTACTAGAGATATCTCGCCAGCAA
TGCACGTTGTATTCACGCTTCGGAGTAAATTTGACTGCTACTGCTGTAGT
TTGTAGGTGTGTAGGTTGTAGGTGTGTTGGCTTACAATCTGATGCGTATT
TCGCCCTTCATACCTCCACATCGCTCCTTTTTCACAGCTACCTGTACGTA
TTCACATGTGGTCTGTAGTTGGACTCTGCTGTATCGCCGCCGGGTATGGG
GAAGGGGGGAGAACGTTTGTCGCCGCACCCACCAGGGAAACACCGCAAAG
CCATTCAAGACAGTGTTGTACGTTCTCTTCCCGCGCATGAAACCTCTTTG
CATATTCTGCACACTATTTACCCAAGACAAAATAATTGACCCACACTCTG
AAAACCTACCAATCTGTAGTAGCCCCACTCCCAGCCACAGCGTATTTCGT
ACGTGCCTCCACCCCGCCCCAACATCCCTCAACCCGGCAATACATTCACC
GCGCACAGTACCAACCTACCCATGCATTGTCAATCCCACCCCCAACCCCT
CCATCCTCTACCCCTGCCCAACTCGCACCTGGCGTAGGTATCGTGGAAGG
AGCAAGAGCGTTTTCAAGATCGCCATCCAGAGGGTGGAGAAGGCCCTCCA
GCAGGCCTACCGCGACAGAAAGGCAAGGAAGGGCCGCTGCTGAATGACCC
GTGTTTGTTTCTTATCTCTGGATAGATAGAGATGAATGTGTTGCGTTACG
TCAAGAAAACGATATATTTCTTGTGTGTTTCTACCCGTGTAAGGAGCCCT
CAGCTCTGGGACAGGGTACGGTCCGGAGAGTGGTGACCGTCACCTGCCAC
CGGAGGTTGTCTATTTTTGGGTGTTGCTTTTGATTACATGGGTCGTTGTG
AGTGGAAGTCGTATATGGCTGGATATGGATGTCCCTTTGCCGTGCGAGCT
ATGCTGTGTTACTTTACAGCCTTGAATTCATTGCTTTGCTGTTGCTACAT
AGCCTGACCAAGGCGAAACGCACGTTTCGAATTTGTACGTCTCTCTCATT
CTCCCCCTTCCCACCCCTCTGGATACTGCGTGTCCGCAGAACAAGAAGAG
GGACTTCCGCAGACTGTGGATCGAGCGCATCAACGCCGGCGTGCGCCAGC
ACGGCATGTCGTACTCGGTGTTCGTCAACAAGGCCAGGAAAGCGGACGTG
GAGTTGAACAGAAAGGTGCATGGCTCGCGTGTGCAGGACTCGGCGCTTGC
TGCGTTTGTTTTGTGCTTCTTCATGTTATTTACTTCGCTACTCTCGTCAA
GCCGGTACCGATGCATGGTACTGCACAGAGCTGGAATGTTTTTTTTAATT
TTATGGCAACAAAAACAGTAACACTTCGGGTTTGATGAACGAGAATTTTC
GTCCTCATCCCAAACCCGAACAAGTTGGGTGCTGCGGTGCTTTTGAGCAG
GAGAGACGGCAGCAGTACCGCAGCAGGTCGACGTACGTGGGAACTAATCC
GCTATTGAAAGCATTCGTCCATCACCTCTATCATAATTTGATGCTCTCGC
GTCGATCGAGGCACACTGGTTTCAGCGTAGACGCGGCCTGCGTCTCCGCT
GACAATCTCGAGCCCAAAATGCTGGTCGTGACTTTGCCCAGCTGGAGACA
CCATCGTACTTTTTTTTTTGTAGTTCCTTGATGGAATGGCGTCGGGCGGG
GATACAAGCCGCTTCTGTTTAGCCACGTCGCCACCAGCCAGCGATTGACA
TGATCCCTGTTCGACTACAGCCGGAGACGGGAGTTTCGTCGGAGGCACTC
TTGTTTGTTTTTTGCCGTTCGTTCATGAACAGGGGAATGGCCTCTTTGGG
GTTGTATTGCCGGCATCGCCGAACTCTGTGTGCATGAGGTACTGCCACAA
ACGAACATCATGTCGCGATCCGGATTTGGCTCGACCCCGCCCTGACCTGC
CCGGCTCTTTACCCACCCAGGCGCCCCCTTCGTGTTTCCTTCCTTGCCTC
GCCTCTCTTGTGTACCTTTGACGCTCTCATGGTGATAGGTGCTGGCCGAG
ATGGCGGTCACGGAGCCGTACAGCTTCCGCGCCGTGGTGGAGACGGTCAA
GGCGAAGGGGTCGCCCAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6438:31..2499-

>mRNA_Ecto-sp13_S_contig6438.17199.1 ID=mRNA_Ecto-sp13_S_contig6438.17199.1|Name=mRNA_Ecto-sp13_S_contig6438.17199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6438:31..2499- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTGGTCAACCGTTCTAGGCAGGGTGAGGCCGCAAGCACTGTGGAC
GTCTCTTGTGAGACCAGGATGCTCATCGGTGGCGAGGCATCGTGGAGGGG
GGCTGGGAGCTGCTGTAGGCGGCAGCAGCGGCTCGCCACAATGGCCGTGC
GATGCGCTCGGTCAGCACCAGCAGCAGTGCCGTGGCATGGCAGCGAACAA
CCACAGGCATAAAAAAATCCTCAAGTTGGCGAAAGGGTATCGTGGAAGGA
GCAAGAGCGTTTTCAAGATCGCCATCCAGAGGGTGGAGAAGGCCCTCCAG
CAGGCCTACCGCGACAGAAAGGCAAGGAAGGGCCGCTGCTGA
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