prot_Ecto-sp13_S_contig6438.17199.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6438.17199.1
Unique Nameprot_Ecto-sp13_S_contig6438.17199.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length114
Homology
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 9.080e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
Query:   63 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRK +K
Sbjct:    1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKK 48          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: W7TQD2_9STRA (50s ribosomal protein l20 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-14
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   18 SLVRPGCSSVARHRGGGLGAAVGGSSGSPQWPCDALGQHQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            SLV    ++VA  R G    AV G  G    PC   G   Q  R +A  NHRHKKI+K+AKGYRGR+ + F+IA+QRVEKALQ AYRDRK +K
Sbjct:    8 SLVLRRAATVATIRAGSQPDAVYG--GIASIPCLLKGPFLQPSRSLA--NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKK 95          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 2.620e-13
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            RHKKILK+AKGYRGRSK+VF++AIQRVEKALQ AYRDR+ +K
Sbjct:   13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKK 54          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: UPI001A15A6C6 (50S ribosomal protein L20 n=1 Tax=Rickettsia sp. TaxID=789 RepID=UPI001A15A6C6)

HSP 1 Score: 69.7 bits (169), Expect = 4.310e-13
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 0
Query:   59 QCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            + R    +  RHKKILKL+KGYRGRSK+ F+IAIQ+VEKALQ AYRDR+A+K
Sbjct:    3 RARSGVVSKRRHKKILKLSKGYRGRSKNCFRIAIQKVEKALQYAYRDRRAKK 54          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: K2EJ18_9BACT (50S ribosomal protein L20 n=3 Tax=Bacteria TaxID=2 RepID=K2EJ18_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 4.990e-13
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            RHKK+LKLAKGYRGRSKS ++IA+QRVEKALQ AYRDR+ RK
Sbjct:   13 RHKKVLKLAKGYRGRSKSCYRIALQRVEKALQYAYRDRRTRK 54          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT)

HSP 1 Score: 69.7 bits (169), Expect = 4.990e-13
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            RHKK+LKLAKGYRGRSK+ F+IAIQRVEKALQ AYRDR+ RK
Sbjct:   13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRK 54          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: RL20_ORITI (50S ribosomal protein L20 n=11 Tax=Orientia TaxID=69474 RepID=RL20_ORITI)

HSP 1 Score: 69.3 bits (168), Expect = 7.400e-13
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0
Query:   66 NNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            N +RHKKILKLAKGYRGR+K+ F+IAIQ+VEKALQ +YRDR+ RK
Sbjct:   10 NKNRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRK 54          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A6M8VXV0_9PROT (50S ribosomal protein L20 n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A6M8VXV0_9PROT)

HSP 1 Score: 68.6 bits (166), Expect = 1.440e-12
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            RHKK++K+AKGYRGRSK+ F+IA+QRVEKALQ AYRDR+ RK
Sbjct:   13 RHKKVIKMAKGYRGRSKNCFRIAVQRVEKALQYAYRDRRVRK 54          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A4P5SLS5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4P5SLS5_9PROT)

HSP 1 Score: 68.2 bits (165), Expect = 1.990e-12
Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            RHKKILKLAKGYRGR+K+ F++AI++VEKAL+ AYRDRKARK
Sbjct:   13 RHKKILKLAKGYRGRAKNCFRVAIEKVEKALRYAYRDRKARK 54          
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Match: A0A2E6VYR4_9PROT (50S ribosomal protein L20 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E6VYR4_9PROT)

HSP 1 Score: 68.2 bits (165), Expect = 2.090e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARK 110
            RHKKILK+AKGYRGRSKS F+IAI+RVEK LQ AYRDR+ RK
Sbjct:   13 RHKKILKMAKGYRGRSKSSFRIAIERVEKGLQYAYRDRRVRK 54          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6438.17199.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI9.080e-2195.8350S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
W7TQD2_9STRA1.390e-1453.7650s ribosomal protein l20 n=1 Tax=Nannochloropsis ... [more]
A0A2S6SQA5_9PROT2.620e-1380.9550S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
UPI001A15A6C64.310e-1367.3150S ribosomal protein L20 n=1 Tax=Rickettsia sp. T... [more]
K2EJ18_9BACT4.990e-1380.9550S ribosomal protein L20 n=3 Tax=Bacteria TaxID=2... [more]
A0A1M3GWJ7_9PROT4.990e-1383.3350S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
RL20_ORITI7.400e-1375.5650S ribosomal protein L20 n=11 Tax=Orientia TaxID=... [more]
A0A6M8VXV0_9PROT1.440e-1276.1950S ribosomal protein L20 n=2 Tax=Proteobacteria T... [more]
A0A4P5SLS5_9PROT1.990e-1278.5750S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2E6VYR4_9PROT2.090e-1280.9550S ribosomal protein L20 n=2 Tax=Alphaproteobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 98..113
score: 23.74
coord: 68..97
score: 43.54
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 64..111
e-value: 6.6E-14
score: 51.9
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 69..110
NoneNo IPR availableGENE3D1.10.720.90coord: 60..111
e-value: 1.3E-17
score: 65.5
NoneNo IPR availablePANTHERPTHR10986:SF16LP04985Pcoord: 69..110
NoneNo IPR availablePRODOMPD002389coord: 76..110
e-value: 2.0E-8
score: 134.0
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 66..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6438contigEcto-sp13_S_contig6438:1457..2499 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6438.17199.1mRNA_Ecto-sp13_S_contig6438.17199.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6438 31..2499 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6438.17199.1 ID=prot_Ecto-sp13_S_contig6438.17199.1|Name=mRNA_Ecto-sp13_S_contig6438.17199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MSWSTVLGRVRPQALWTSLVRPGCSSVARHRGGGLGAAVGGSSGSPQWPC
DALGQHQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQ
QAYRDRKARKGRC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
IPR035566Ribosomal_protein_L20_C