mRNA_Ecto-sp13_S_contig64064.17172.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64064.17172.1
Unique NamemRNA_Ecto-sp13_S_contig64064.17172.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64064.17172.1 vs. uniprot
Match: D7FYQ8_ECTSI (DUF4821 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYQ8_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 3.280e-134
Identity = 216/229 (94.32%), Postives = 218/229 (95.20%), Query Frame = 1 
Query:    1 PQKFRKLFGSYNFGQMIETSYLAVSALSTLDPKPGGGGDVHLPGNRQHQQPETLVGFAILSDSPRAGISEDWLEWFSETHAPADAEVTMTNTLWMDFAVAVSAARASGVVSGVAVGREEEGXXXXXXXXXXXXXXXXXAGIIEDIVRTVFNTLPEIDYLVISLPGDTSTGGKGSKNGAGTACIPTPAYLLRAFEGLSRHADASPNNLDEAYGTPRLLLCDRMAFLPTLA 687
            P  FRKLFGSYNFGQMIETSYL+VSALSTLDP P GGGDVHLPGNRQ Q PE LVGFAILSDSPRAGISEDWLEWFSETHAPADAEVTMTNTLWMDFAVAVSAARASGVVSGVAVGREEEGXXXXXXXXXXXXXXXX AGI+EDIVRTVFNTLPEIDYLVISLPGDTSTGGKGSK GAGTA IPTPAYLLRAFE LSRHADASPNNLDEAYGTPRLLLCDRMAFLPTLA
Sbjct:   26 PSMFRKLFGSYNFGQMIETSYLSVSALSTLDPNPAGGGDVHLPGNRQQQHPEFLVGFAILSDSPRAGISEDWLEWFSETHAPADAEVTMTNTLWMDFAVAVSAARASGVVSGVAVGREEEGXXXXXXXXXXXXXXXXAAGILEDIVRTVFNTLPEIDYLVISLPGDTSTGGKGSKKGAGTASIPTPAYLLRAFEVLSRHADASPNNLDEAYGTPRLLLCDRMAFLPTLA 254
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BLAST of mRNA_Ecto-sp13_S_contig64064.17172.1 vs. uniprot
Match: A0A6H5JFL7_9PHAE (DUF4821 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL7_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 3.230e-119
Identity = 181/214 (84.58%), Postives = 187/214 (87.38%), Query Frame = 1 
Query:   46 MIETSYLAVSALSTLDPKPGGGGDVHLPGNRQHQQPETLVGFAILSDSPRAGISEDWLEWFSETHAPADAEVTMTNTLWMDFAVAVSAARASGVVSGVAVGREEEGXXXXXXXXXXXXXXXXXAGIIEDIVRTVFNTLPEIDYLVISLPGDTSTGGKGSKNGAGTACIPTPAYLLRAFEGLSRHADASPNNLDEAYGTPRLLLCDRMAFLPTLA 687
            MIETSYL+VSALST DP PGGGGDVHL GNRQ QQP+ LVGFAILSDSPRAG+SEDWLEWFSETHAPADAEVTMTNTLWMDFAVAVSAARASGVVSGVAVGREE G                 AGI+EDIVRTVFNTLPEIDYLV+SLPGDTSTGGKGSK GAGTA IPTP YLLRAF+ LSRHADASPNNLDEAYGTPRLLLCDRMAFLPTLA
Sbjct:    1 MIETSYLSVSALSTPDPNPGGGGDVHLLGNRQQQQPDILVGFAILSDSPRAGLSEDWLEWFSETHAPADAEVTMTNTLWMDFAVAVSAARASGVVSGVAVGREEVGDNNAVACRGEEAEEEEAAGILEDIVRTVFNTLPEIDYLVMSLPGDTSTGGKGSKKGAGTASIPTPGYLLRAFQVLSRHADASPNNLDEAYGTPRLLLCDRMAFLPTLA 214
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BLAST of mRNA_Ecto-sp13_S_contig64064.17172.1 vs. uniprot
Match: A0A835ZCT4_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.180e-17
Identity = 46/99 (46.46%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:    1 PQKFRKLFGSYNFGQMIETSYLAVSALSTLDPKPGGGGDVHLPGNRQHQQPETLVGFAILSDSPRAGISEDWLEWFSETHAPADAEVTMTNTLWMDFAV 297
            P  +RKLFGSYNF  MIE  YL + AL                        E + GF  LSD+PRAG +E+WL WF+ET+APADA+    NTLW++FAV
Sbjct:   42 PGMYRKLFGSYNFASMIECGYLCLIALVG----------------------EEIAGFLSLSDAPRAGGAEEWLAWFAETYAPADADARPANTLWVEFAV 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64064.17172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYQ8_ECTSI3.280e-13494.32DUF4821 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JFL7_9PHAE3.230e-11984.58DUF4821 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZCT4_9STRA6.180e-1746.46AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64064contigEcto-sp13_S_contig64064:86..772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score395.2
Seed ortholog evalue2.1e-107
Seed eggNOG ortholog2880.D7FYQ8
Preferred nameAK9
Model size687
KEGG rclassRC00002
KEGG koko:K18533
KEGG ReactionR00124,R00127,R00156,R00330,R00570,R00722,R01137,R01547,R01857,R02093,R02326,R02331,R03530
KEGG Pathwayko00230,ko00240,ko01100,ko01110,ko01130,map00230,map00240,map01100,map01110,map01130
KEGG ModuleM00049,M00052,M00053
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006174,GO:0006186,GO:0006725,GO:0006753,GO:0006754,GO:0006756,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009151,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009182,GO:0009185,GO:0009186,GO:0009199,GO:0009200,GO:0009201,GO:0009202,GO:0009205,GO:0009206,GO:0009215,GO:0009216,GO:0009259,GO:0009260,GO:0009262,GO:0009394,GO:0009987,GO:0012505,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017144,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046031,GO:0046033,GO:0046034,GO:0046056,GO:0046066,GO:0046390,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0055086,GO:0061508,GO:0061565,GO:0061566,GO:0061567,GO:0061568,GO:0061569,GO:0061570,GO:0061571,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.adenylate kinase activity
EggNOG OGsCOG0563@1,KOG3078@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-26_004110.2
EC2.7.4.3,2.7.4.6
Cds size687
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.667395-CDS-Ecto-sp13_S_contig64064:85..7721681463886.667395-CDS-Ecto-sp13_S_contig64064:85..772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64064 86..772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64064.17172.1prot_Ecto-sp13_S_contig64064.17172.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64064 86..772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64064.17172.1

>prot_Ecto-sp13_S_contig64064.17172.1 ID=prot_Ecto-sp13_S_contig64064.17172.1|Name=mRNA_Ecto-sp13_S_contig64064.17172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
PQKFRKLFGSYNFGQMIETSYLAVSALSTLDPKPGGGGDVHLPGNRQHQQ
PETLVGFAILSDSPRAGISEDWLEWFSETHAPADAEVTMTNTLWMDFAVA
VSAARASGVVSGVAVGREEEGDNNAAARRGEEAEEEEAAGIIEDIVRTVF
NTLPEIDYLVISLPGDTSTGGKGSKNGAGTACIPTPAYLLRAFEGLSRHA
DASPNNLDEAYGTPRLLLCDRMAFLPTLA
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mRNA from alignment at Ecto-sp13_S_contig64064:86..772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64064.17172.1 ID=mRNA_Ecto-sp13_S_contig64064.17172.1|Name=mRNA_Ecto-sp13_S_contig64064.17172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64064:86..772+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCAAAAGTTCCGAAAGCTGTTCGGCTCCTACAATTTCGGCCAGATGAT
CGAGACCTCGTATCTCGCCGTGAGTGCGCTGTCCACCCTCGATCCGAAGC
CAGGCGGCGGCGGGGATGTCCACCTCCCTGGCAACAGACAACACCAACAG
CCCGAAACTCTGGTCGGCTTCGCGATCCTCTCCGACTCTCCGCGGGCCGG
CATCTCGGAAGACTGGCTGGAATGGTTCTCCGAGACTCACGCTCCCGCGG
ATGCCGAAGTGACCATGACGAACACCCTCTGGATGGACTTTGCGGTTGCC
GTTAGCGCCGCCCGGGCGTCTGGCGTGGTAAGTGGTGTCGCTGTCGGTAG
GGAGGAAGAGGGCGACAACAACGCCGCGGCGCGCCGGGGGGAAGAGGCCG
AGGAAGAAGAGGCAGCCGGCATTATCGAGGACATCGTTCGCACCGTATTC
AACACCCTCCCAGAAATCGACTACCTCGTCATAAGCCTGCCGGGCGACAC
GAGCACTGGCGGCAAAGGCAGCAAGAACGGGGCCGGGACAGCATGCATAC
CGACGCCCGCATACCTCTTGCGCGCGTTTGAGGGGCTCAGCAGGCACGCG
GATGCGTCTCCAAACAACCTGGACGAGGCTTACGGGACGCCGCGGCTGCT
GCTGTGCGACCGCATGGCCTTTCTACCAACTCTTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64064:86..772+

>mRNA_Ecto-sp13_S_contig64064.17172.1 ID=mRNA_Ecto-sp13_S_contig64064.17172.1|Name=mRNA_Ecto-sp13_S_contig64064.17172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64064:86..772+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCAAAAGTTCCGAAAGCTGTTCGGCTCCTACAATTTCGGCCAGATGAT
CGAGACCTCGTATCTCGCCGTGAGTGCGCTGTCCACCCTCGATCCGAAGC
CAGGCGGCGGCGGGGATGTCCACCTCCCTGGCAACAGACAACACCAACAG
CCCGAAACTCTGGTCGGCTTCGCGATCCTCTCCGACTCTCCGCGGGCCGG
CATCTCGGAAGACTGGCTGGAATGGTTCTCCGAGACTCACGCTCCCGCGG
ATGCCGAAGTGACCATGACGAACACCCTCTGGATGGACTTTGCGGTTGCC
GTTAGCGCCGCCCGGGCGTCTGGCGTGGTAAGTGGTGTCGCTGTCGGTAG
GGAGGAAGAGGGCGACAACAACGCCGCGGCGCGCCGGGGGGAAGAGGCCG
AGGAAGAAGAGGCAGCCGGCATTATCGAGGACATCGTTCGCACCGTATTC
AACACCCTCCCAGAAATCGACTACCTCGTCATAAGCCTGCCGGGCGACAC
GAGCACTGGCGGCAAAGGCAGCAAGAACGGGGCCGGGACAGCATGCATAC
CGACGCCCGCATACCTCTTGCGCGCGTTTGAGGGGCTCAGCAGGCACGCG
GATGCGTCTCCAAACAACCTGGACGAGGCTTACGGGACGCCGCGGCTGCT
GCTGTGCGACCGCATGGCCTTTCTACCAACTCTTGCG
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