mRNA_Ecto-sp13_S_contig6405.17169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6405.17169.1
Unique NamemRNA_Ecto-sp13_S_contig6405.17169.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6405.17169.1 vs. uniprot
Match: A0A6H5JNI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI7_9PHAE)

HSP 1 Score: 669 bits (1727), Expect = 8.060e-232
Identity = 414/470 (88.09%), Postives = 427/470 (90.85%), Query Frame = 1 
Query:    1 DLFSFRACCDTVLANFAAPDLVKRAIAGEVFRVWTRRRGEDMRARRSADAILGAAQSPAISELDKSPPALAMSTDMVPLTVVDSGSPVLLQGGGSQPQTESM----------LQQQXXXXXXXXXXXXXXXXXNEPSGEGAXXXXXXXXXXXXXXXXXXXXXTGGTMLSSPPAEVDSDTASEGGEGGAPVNSHFVVTPAITRAAAATVATAPPVGGLGVRSAALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKKLLATMLQDAKVQAGELDVVHGMSSPAITRSNLSGAAXXXXXXXXXXXVTRANLHTTALLMSGKEEREKASKNASNSAVRNVGYSGRDISSKVAERWGATLLLHRVKRARAVDSSPLGPREVAAAPGDISVMPITTASSQRRQLWALAIRENELRHERMKEDSRSEYDVRQKELVSWMVDEEAGRHDHLDGTAGPPPPVWLDTDR 1380
            +L + RACCD VLANFAAPDLVKR IAGEVFRVWTRRRGEDMRARRSADAILG AQSP +SELD+SPPA AM TD+VPLTVVDSGSPVLL+GGGSQ QTE+M              XXXXXXXXXXXXXXXXXNEPSGEGA   XXX  XXXXXXXXXXXXXTGGTMLSSPPAEVD DTASEGG+GGAP  SH VVTPAITR  A TVATAPPVGGLGVRSAALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALK LLATMLQDAKVQAGELDVVHGMSSPAITRSNLSGAAXXXXXXXXXX VTRANLHTTALL+SGKEEREKAS++ SNSAVRNVGYSGRDI +KVAERWGATLLLHRVKRA+AVD SPLGP EVAAAPGDISVMPIT ASSQRRQLWALAIRENELRHERMKED RSEYDVRQKELVSWMVDEEAGRHDHLDGTAGPPPPVWLDTDR
Sbjct:  458 NLLALRACCDAVLANFAAPDLVKRVIAGEVFRVWTRRRGEDMRARRSADAILGTAQSPGVSELDESPPAPAMPTDVVPLTVVDSGSPVLLEGGGSQTQTEAMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEPSGEGAVAAXXXEMXXXXXXXXXXXXXTGGTMLSSPPAEVDLDTASEGGDGGAPAISHLVVTPAITRGTAPTVATAPPVGGLGVRSAALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKTLLATMLQDAKVQAGELDVVHGMSSPAITRSNLSGAAXXXXXXXXXXVVTRANLHTTALLVSGKEEREKASRSNSNSAVRNVGYSGRDIGTKVAERWGATLLLHRVKRAKAVDYSPLGPCEVAAAPGDISVMPITKASSQRRQLWALAIRENELRHERMKEDGRSEYDVRQKELVSWMVDEEAGRHDHLDGTAGPPPPVWLDTDR 927
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6405.17169.1 vs. uniprot
Match: D8LTH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH9_ECTSI)

HSP 1 Score: 532 bits (1371), Expect = 7.050e-187
Identity = 298/317 (94.01%), Postives = 303/317 (95.58%), Query Frame = 1 
Query:  469 MLSSPPAEVDSDTASEGGEGGAPVNSHFVVTPAITRAAAATVATAPPVGGLGVRSAALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKKLLATMLQDAKVQAGELDVVHGMSSPAITRSNLSGAAXXXXXXXXXXXVTRANLHTTALLMSGKEEREKASKNASNSAVRNVGYSGRDISSKVAERWGATLLLHRVKRARAVDSSPLGPREVAAAPGDISVMPITTASSQRRQLWALAIRENELRHERMKEDSRSEYDVRQKELVSWMVDEEAGRHDHLDGTAGPPPPVWLDTDR*TADGRGRSPFVA 1419
            MLSSPPAEVDSDT SEGG+ GAP NSH VVTPAITRAAAATVATAP VGGLGVRSAALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKKLLATMLQDAKVQAGELDVVHGMS PAITRSNLSGAAXXXXXXXXXXXVTRANLHTTALL+SGKEEREKASK+ SNSAVRNVGYSGRDI SKVAERWGATLLLHRVKRARA DSSPLGP  VAAAPGDISV+PITTASSQRRQLWALAIRENELRHERMKEDSRSEYDVRQKEL+SWMVDEEAGRHDHLDGTAGPPPPVWLDTDR TADG  RSPFVA
Sbjct:    1 MLSSPPAEVDSDTVSEGGDIGAPANSHLVVTPAITRAAAATVATAPTVGGLGVRSAALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKKLLATMLQDAKVQAGELDVVHGMSGPAITRSNLSGAAXXXXXXXXXXXVTRANLHTTALLVSGKEEREKASKSTSNSAVRNVGYSGRDIGSKVAERWGATLLLHRVKRARAADSSPLGPCGVAAAPGDISVVPITTASSQRRQLWALAIRENELRHERMKEDSRSEYDVRQKELLSWMVDEEAGRHDHLDGTAGPPPPVWLDTDRCTADGGDRSPFVA 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6405.17169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNI7_9PHAE8.060e-23288.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTH9_ECTSI7.050e-18794.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6405contigEcto-sp13_S_contig6405:6449..7867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1419
Hectar predicted targeting categoryother localisation
Exons1
Cds size1260
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.44909-UTR-Ecto-sp13_S_contig6405:6448..64841681463886.44909-UTR-Ecto-sp13_S_contig6405:6448..6484Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6405 6449..6484 -
1681463886.476412-UTR-Ecto-sp13_S_contig6405:7744..78671681463886.476412-UTR-Ecto-sp13_S_contig6405:7744..7867Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6405 7745..7867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.4606557-CDS-Ecto-sp13_S_contig6405:6484..77441681463886.4606557-CDS-Ecto-sp13_S_contig6405:6484..7744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6405 6485..7744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6405.17169.1prot_Ecto-sp13_S_contig6405.17169.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6405 6485..7744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6405.17169.1

>prot_Ecto-sp13_S_contig6405.17169.1 ID=prot_Ecto-sp13_S_contig6405.17169.1|Name=mRNA_Ecto-sp13_S_contig6405.17169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=420bp
MRARRSADAILGAAQSPAISELDKSPPALAMSTDMVPLTVVDSGSPVLLQ
GGGSQPQTESMLQQQQQQQQQEKQQQQQQQQENEPSGEGAEAAAAAEMAE
LAELADLAEAATGGTMLSSPPAEVDSDTASEGGEGGAPVNSHFVVTPAIT
RAAAATVATAPPVGGLGVRSAALGNDDVFTLSSPTSFPGGPRIELRMTAS
ELRRARQTKAAALKKLLATMLQDAKVQAGELDVVHGMSSPAITRSNLSGA
AAAAAAAEAAAVVTRANLHTTALLMSGKEEREKASKNASNSAVRNVGYSG
RDISSKVAERWGATLLLHRVKRARAVDSSPLGPREVAAAPGDISVMPITT
ASSQRRQLWALAIRENELRHERMKEDSRSEYDVRQKELVSWMVDEEAGRH
DHLDGTAGPPPPVWLDTDR*
back to top

mRNA from alignment at Ecto-sp13_S_contig6405:6449..7867-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6405.17169.1 ID=mRNA_Ecto-sp13_S_contig6405.17169.1|Name=mRNA_Ecto-sp13_S_contig6405.17169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6405:6449..7867- (Ectocarpus species13 EcNAP12_S_4_19m)
GATCTATTCTCGTTCAGGGCGTGCTGTGACACCGTGCTGGCCAACTTCGC
CGCCCCAGACCTCGTCAAACGCGCCATTGCAGGAGAGGTTTTCCGGGTAT
GGACAAGAAGGAGGGGCGAAGATATGCGCGCTAGGCGAAGCGCTGATGCG
ATTCTCGGCGCAGCTCAAAGCCCTGCCATTTCTGAATTGGACAAGTCGCC
TCCTGCCCTAGCCATGTCTACTGACATGGTACCACTGACAGTTGTGGACA
GTGGTAGCCCCGTTCTACTCCAAGGAGGCGGGTCTCAACCTCAAACGGAA
TCGATGCTACAGCAGCAACAGCAGCAGCAGCAGCAAGAGAAGCAGCAGCA
GCAGCAGCAGCAGCAGGAAAACGAACCAAGCGGGGAAGGGGCAGAGGCGG
CGGCAGCTGCGGAAATGGCGGAGCTGGCAGAACTGGCCGATTTGGCCGAA
GCAGCGACCGGAGGTACGATGCTCTCGTCACCGCCGGCGGAAGTAGATTC
GGATACTGCCAGTGAAGGTGGCGAGGGTGGCGCTCCTGTAAACAGCCACT
TCGTAGTGACACCTGCGATCACGAGAGCCGCGGCCGCAACGGTAGCGACC
GCACCACCAGTGGGCGGGCTTGGAGTCCGGTCGGCCGCCCTCGGCAACGA
CGACGTCTTCACCCTTTCCAGCCCGACCAGCTTCCCAGGCGGGCCACGTA
TAGAGCTTAGGATGACCGCAAGCGAGCTGAGGAGGGCTCGCCAGACGAAG
GCGGCCGCACTGAAGAAACTACTTGCGACGATGCTTCAGGATGCCAAGGT
GCAAGCGGGCGAGCTAGACGTCGTCCACGGGATGAGCAGCCCCGCAATCA
CCAGGAGCAACTTGAGCGGAGCGGCAGCAGCGGCCGCAGCGGCAGAAGCG
GCCGCGGTGGTGACGCGCGCAAACTTGCATACGACAGCACTCCTTATGAG
TGGCAAGGAGGAGCGAGAAAAGGCTAGCAAGAACGCCTCGAACAGCGCCG
TTCGGAACGTCGGCTACAGTGGCAGGGACATCAGTTCAAAGGTGGCGGAA
AGGTGGGGGGCAACGCTGCTGCTGCACCGCGTCAAGAGGGCACGAGCAGT
AGACTCTTCGCCATTGGGACCTCGCGAGGTTGCCGCCGCCCCTGGGGATA
TCTCCGTCATGCCGATAACAACGGCGAGCAGCCAGCGCCGCCAGCTGTGG
GCCCTCGCCATCCGCGAGAACGAACTGCGGCACGAGAGGATGAAGGAGGA
CAGCAGGAGTGAGTACGACGTGAGGCAAAAGGAGCTGGTCAGCTGGATGG
TGGACGAAGAGGCCGGCCGGCACGATCACTTGGATGGAACCGCGGGCCCT
CCGCCGCCAGTGTGGCTTGACACGGACAGATGAACCGCTGACGGACGCGG
CCGGTCGCCCTTTGTGGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6405:6449..7867-

>mRNA_Ecto-sp13_S_contig6405.17169.1 ID=mRNA_Ecto-sp13_S_contig6405.17169.1|Name=mRNA_Ecto-sp13_S_contig6405.17169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6405:6449..7867- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGCTAGGCGAAGCGCTGATGCGATTCTCGGCGCAGCTCAAAGCCC
TGCCATTTCTGAATTGGACAAGTCGCCTCCTGCCCTAGCCATGTCTACTG
ACATGGTACCACTGACAGTTGTGGACAGTGGTAGCCCCGTTCTACTCCAA
GGAGGCGGGTCTCAACCTCAAACGGAATCGATGCTACAGCAGCAACAGCA
GCAGCAGCAGCAAGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGGAAAACG
AACCAAGCGGGGAAGGGGCAGAGGCGGCGGCAGCTGCGGAAATGGCGGAG
CTGGCAGAACTGGCCGATTTGGCCGAAGCAGCGACCGGAGGTACGATGCT
CTCGTCACCGCCGGCGGAAGTAGATTCGGATACTGCCAGTGAAGGTGGCG
AGGGTGGCGCTCCTGTAAACAGCCACTTCGTAGTGACACCTGCGATCACG
AGAGCCGCGGCCGCAACGGTAGCGACCGCACCACCAGTGGGCGGGCTTGG
AGTCCGGTCGGCCGCCCTCGGCAACGACGACGTCTTCACCCTTTCCAGCC
CGACCAGCTTCCCAGGCGGGCCACGTATAGAGCTTAGGATGACCGCAAGC
GAGCTGAGGAGGGCTCGCCAGACGAAGGCGGCCGCACTGAAGAAACTACT
TGCGACGATGCTTCAGGATGCCAAGGTGCAAGCGGGCGAGCTAGACGTCG
TCCACGGGATGAGCAGCCCCGCAATCACCAGGAGCAACTTGAGCGGAGCG
GCAGCAGCGGCCGCAGCGGCAGAAGCGGCCGCGGTGGTGACGCGCGCAAA
CTTGCATACGACAGCACTCCTTATGAGTGGCAAGGAGGAGCGAGAAAAGG
CTAGCAAGAACGCCTCGAACAGCGCCGTTCGGAACGTCGGCTACAGTGGC
AGGGACATCAGTTCAAAGGTGGCGGAAAGGTGGGGGGCAACGCTGCTGCT
GCACCGCGTCAAGAGGGCACGAGCAGTAGACTCTTCGCCATTGGGACCTC
GCGAGGTTGCCGCCGCCCCTGGGGATATCTCCGTCATGCCGATAACAACG
GCGAGCAGCCAGCGCCGCCAGCTGTGGGCCCTCGCCATCCGCGAGAACGA
ACTGCGGCACGAGAGGATGAAGGAGGACAGCAGGAGTGAGTACGACGTGA
GGCAAAAGGAGCTGGTCAGCTGGATGGTGGACGAAGAGGCCGGCCGGCAC
GATCACTTGGATGGAACCGCGGGCCCTCCGCCGCCAGTGTGGCTTGACAC
GGACAGATGA
back to top