mRNA_Ecto-sp13_S_contig640.17164.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig640.17164.1
Unique NamemRNA_Ecto-sp13_S_contig640.17164.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig640.17164.1 vs. uniprot
Match: D8LQU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU0_ECTSI)

HSP 1 Score: 615 bits (1586), Expect = 2.160e-214
Identity = 374/456 (82.02%), Postives = 391/456 (85.75%), Query Frame = 1 
Query:    1 MAKDMLEEHPEAHA-QSEFFCLEVYVADVESCSFSHTSVTPTVILSLLDFEPLVFDLS--PTAQRQARRKRGPGFREVPQWEEENDQHDGIGKVDSTNDTFRASSDSAQHDYYSFNNRKSKTTATTRGKHTTSDVENKNGQHDLKSFACSKGKSCIFTANPVGLSRALQTQSALTFLVASKLSQRQAAIHGSCAIDLSAFGPNTELSQSLPRAVSCWGYRSTCVESKDLKGATVARAGLTVSLSCLGATGSLIHFTPAWTEAAPYRASGDGSPSAVVPPRPDHYTPDRSTPGRLPVVHEQCTIEGARLDGQARGHAPVAKQPGTDHPMSRDTEAGSARCGDGTTKNCGSSAGGTSAGAECWTCEYNPRDGCLVGPTSSAAAVVEPTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVGPPGDSAGAEAYDNDDAETDTKTSPVR 1359
            MAK+ LEEHP  H  QSEFFCLEVYVADVESCSF+HTSVTPTVILSLLDFEPLVFDLS  P AQRQAR KRGPG REV QWEE++DQH+GIG+V+STN+TFRASSD AQHD + FNNRKSKTTATT  KH  S  +N+NG    K F CSKGKSCIFTANP  LSRALQTQSALTFLVASKLS RQAAIHGSCAIDLS FGPN ELS SLPRAVSCWG+R+TCVESKDLKGATVARAGLTVSLSCLGATGSLIH TP  T  A YRASG+GSPSA  PPRPDH TPDRSTPG LPVV +Q T EG +LD QARGHAPVAKQPGTDH M R  EAGSAR GDG TK  GS AGGTSAGAECWTCEYNPRDG LVGPTSSAAA VEPTAAA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AV GPPGDSAGAEA  NDDAETDT+TSP R
Sbjct:    1 MAKNRLEEHPLDHREQSEFFCLEVYVADVESCSFAHTSVTPTVILSLLDFEPLVFDLSRTPPAQRQARGKRGPGLREVSQWEEKDDQHNGIGRVESTNNTFRASSDGAQHDDHLFNNRKSKTTATTTVKHA-SYADNENGPCHPKPFFCSKGKSCIFTANPADLSRALQTQSALTFLVASKLSLRQAAIHGSCAIDLSTFGPNAELSHSLPRAVSCWGHRTTCVESKDLKGATVARAGLTVSLSCLGATGSLIHLTPVRTGVASYRASGNGSPSAAAPPRPDHSTPDRSTPGGLPVVSDQWTTEGTQLDAQARGHAPVAKQPGTDHLMCRHAEAGSARYGDGRTKESGSGAGGTSAGAECWTCEYNPRDGRLVGPTSSAAAAVEPTAAATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGGPPGDSAGAEADGNDDAETDTETSPTR 455
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig640.17164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQU0_ECTSI2.160e-21482.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig640contigEcto-sp13_S_contig640:19590..23062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1722
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_002270.1
Cds size1722
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.0084236-CDS-Ecto-sp13_S_contig640:19589..196551681463886.0084236-CDS-Ecto-sp13_S_contig640:19589..19655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig640 19590..19655 +
1681463886.02243-CDS-Ecto-sp13_S_contig640:20072..205551681463886.02243-CDS-Ecto-sp13_S_contig640:20072..20555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig640 20073..20555 +
1681463886.035194-CDS-Ecto-sp13_S_contig640:20904..210141681463886.035194-CDS-Ecto-sp13_S_contig640:20904..21014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig640 20905..21014 +
1681463886.0496292-CDS-Ecto-sp13_S_contig640:21342..222561681463886.0496292-CDS-Ecto-sp13_S_contig640:21342..22256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig640 21343..22256 +
1681463886.0644155-CDS-Ecto-sp13_S_contig640:22913..230621681463886.0644155-CDS-Ecto-sp13_S_contig640:22913..23062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig640 22914..23062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig640.17164.1prot_Ecto-sp13_S_contig640.17164.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig640 19590..23062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig640.17164.1

>prot_Ecto-sp13_S_contig640.17164.1 ID=prot_Ecto-sp13_S_contig640.17164.1|Name=mRNA_Ecto-sp13_S_contig640.17164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=574bp
MAKDMLEEHPEAHAQSEFFCLEVYVADVESCSFSHTSVTPTVILSLLDFE
PLVFDLSPTAQRQARRKRGPGFREVPQWEEENDQHDGIGKVDSTNDTFRA
SSDSAQHDYYSFNNRKSKTTATTRGKHTTSDVENKNGQHDLKSFACSKGK
SCIFTANPVGLSRALQTQSALTFLVASKLSQRQAAIHGSCAIDLSAFGPN
TELSQSLPRAVSCWGYRSTCVESKDLKGATVARAGLTVSLSCLGATGSLI
HFTPAWTEAAPYRASGDGSPSAVVPPRPDHYTPDRSTPGRLPVVHEQCTI
EGARLDGQARGHAPVAKQPGTDHPMSRDTEAGSARCGDGTTKNCGSSAGG
TSAGAECWTCEYNPRDGCLVGPTSSAAAVVEPTAAATAAGRDVSDAYLGP
KRGGAVSPGAPCHAVEEETGAAAAVVGPPGDSAGAEAYDNDDAETDTKTS
PVRLSVAASVSKIDWMGSPGSDSRLQETPLQTEGCCGLDEKGGGGKKPDE
IAATEEEGVAGAGQGRNKAARNFPGNNRLVTSWRPGAVPSHHEEGIVFDR
RAAAVPSATGAAPDRGGHRSATRR
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mRNA from alignment at Ecto-sp13_S_contig640:19590..23062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig640.17164.1 ID=mRNA_Ecto-sp13_S_contig640.17164.1|Name=mRNA_Ecto-sp13_S_contig640.17164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig640:19590..23062+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAAGACATGCTTGAAGAACACCCCGAAGCCCACGCACAATCCGA
GTTTTTCTGTCTCGAGGTGCGAGAACCGTCCCAACCTCCCACCCTCAAGT
ACCATGAGAGATTTTGCACATGGGCAGGACACAGCAGTAGACTACAGCTC
TACTATACACGGTATACGGACAACGCATGCTATATGCACCTGTATGGATT
ATGCCTAAGAATCCGAACATAGTCGAGCTGTTCAGGTCAGCCTTGGTAAG
AGGGACCAGATGAGCCTGCTGTAGATTTGATCTTGCCGCTAGAGAGAGTA
TCTGTCGATCTTTCTTTTTTCTTTTTTCCGAACGCCACCGTAGAGCCAGT
GAGGACAGGCGTGCGCGGTACGGAGTTAACAGCAAGGCAACCGTAGGGTC
ACAAATTTTCATCCACTCGCGCAAATGTAGGCTAATTGGAAAACCTTCCC
CTATGCCCACCGGCTTTCTCTCTGTCACCTCAGGTGTACGTGGCTGATGT
GGAATCATGTTCATTCTCGCACACAAGCGTCACCCCAACCGTGATCCTGT
CTCTCCTCGACTTCGAGCCTTTGGTGTTCGATCTATCTCCTACAGCACAA
CGACAAGCACGCAGAAAACGAGGACCGGGGTTCCGAGAGGTGCCGCAATG
GGAGGAAGAGAACGACCAGCACGACGGGATTGGAAAGGTCGACTCCACGA
ACGACACCTTTCGAGCATCCAGCGACAGCGCTCAGCATGATTATTACTCT
TTCAACAACAGAAAATCGAAGACAACAGCCACGACAAGAGGGAAGCACAC
AACAAGCGACGTCGAGAACAAAAACGGCCAGCACGATCTGAAGTCGTTCG
CCTGCAGCAAAGGGAAGTCTTGCATTTTCACGGCGAACCCCGTAGGCCTA
TCCCGGGCCCTCCAGACCCAAAGCGCACTCACGTTCCTGGTTGCATCGAA
GCTATCCCAGCGCCAGGTCGGTATTCAGAGGTACCTTGTACGCATTACCG
GTGACAATCTCTTAGCTTGCTTTGGGGGCCTCGCGTCTCACATAGGTCGC
TGCTGTTCACGTTGCATAACCCGTTCTTTTGACAGGAACGATATGACAAT
CGTAGCTTTGCGCGAAGCTACGTGATGCACCAGACGTTCCTGTGCGTAGG
CGTATGACGCACCAGTCGTACATCACGGCCTTTTGCTAGTGCGCTACAGG
CATCATTACCACGTCAATTTCCTTGCTGACCACGCGGCGATTTCCTTCCC
CTTTCCTTTCGATGATAAGTCAGTAGAGCTCCACCCCCTGCTTGACCAAT
CCTTGGTCTGACCAGGCTGCGATACACGGGTCGTGCGCCATCGATCTGTC
CGCCTTCGGCCCGAACACCGAGCTCTCTCAATCCCTTCCCCGGGCCGTGT
CATGTTGGGGGTACCGTTCGACTTGGTAAGCGGTCGTTTCTTGGGACACA
GGGGGGCTCGAGGAGGTCGCCTAATAGATTGGGCTCCTCTTGGTTGTTGT
TTGGTGCCACCTTGGTCTTTCGTAGCCTTGACAAAAGCCTGCACGTGCTA
CATTTTCCCTTCTTCAGGTCGTCCACCTGAAATGTGGTATTTTTGCTAGA
GCCACGGAAACTTCGTCCCTCCGAACTGGATTGTCAACCAGATTTTTTTT
TAGATGCTTTTTGCGCCCAGTTCCTCCCGGTGTGCACGATCCACTGTTCT
CGACGAAACACTGCGACCCTTCTCCCAACTCGCCCTCGATCAACGTCGAA
CAGCGTGGAATCGAAGGATCTGAAGGGCGCTACGGTGGCCAGGGCCGGCC
TCACCGTTTCTCTCTCCTGCTTGGGGGCAACGGGGTCTTTGATTCACTTC
ACTCCGGCATGGACGGAGGCGGCTCCGTATCGGGCTTCCGGCGATGGAAG
TCCCTCCGCCGTCGTTCCCCCTCGCCCCGACCACTATACTCCTGACCGGT
CGACGCCAGGCAGACTCCCGGTGGTTCACGAGCAGTGCACAATAGAGGGT
GCACGGCTCGATGGCCAAGCCCGTGGTCACGCTCCCGTGGCGAAACAGCC
GGGAACCGACCATCCAATGTCCAGGGACACTGAGGCGGGGTCCGCGCGTT
GCGGGGATGGAACAACAAAAAATTGTGGGTCCAGTGCTGGCGGAACATCG
GCCGGTGCAGAGTGTTGGACCTGCGAGTACAACCCCCGAGATGGATGCCT
CGTAGGACCCACGTCTTCTGCCGCAGCAGTCGTCGAGCCCACCGCCGCCG
CAACAGCAGCAGGCAGGGACGTTTCTGACGCCTACCTGGGTCCCAAGCGC
GGTGGAGCCGTCTCTCCCGGCGCCCCCTGTCATGCGGTGGAGGAAGAAAC
CGGCGCTGCTGCCGCTGTTGTTGGTCCGCCTGGCGATTCCGCAGGAGCCG
AAGCGTACGACAACGACGACGCGGAGACGGACACCAAGACGTCGCCGGTA
AGACTGTCGGTGGCCGCGAGTGTCTCGAAGATCGACTGGATGGGATCGCC
CGGGAGCGACAGCAGACTGCAAGAGACACCGCTGCAAACAGAGGGTTGCT
GCGGTCTGGATGAGAAGGGGGGCGGGGGGAAGAAACCAGATGAGATTGCG
GCGACAGAGGAGGAGGGAGTAGCCGGCGCGGGGCAAGGCAGGAACAAGGC
AGCCCGAAACTTTCCGGGTGCGGGCGCCCACGTGTGTTGCATGCCATGTG
TGCCATTGCTTCTACTTGCATCGAGGTTGTTCGTACCGTACAACAGCAAG
AAGGTCGTGCTCACCAGATTGCCGACGAAAAAGCCCTTAGTCCCAGCGGT
GTGAGCATGGATGTGGGTTAGAGAAGGCGCTGGACCCAACAGGGGTCACC
GAATCATCCGCTAAGAACGTCGTTTCAGCGCGTATTGTCTGGTACTAATT
TGTGTTGGAATATTTGGCACTACCGTAGCTTCAGCGTTAGGTAGTCAGCT
TGAGTTCAAATGTTGTCAATGTTACTACGTCATGTCGTAGAAAATTCGTT
TTCGACGACAATCTACGTCACGTCTTCGGGAACCGATACGGGACAATCCT
CACCACCCACAAACCTGCATCACCTTGAGATAGCTGTACAGAGAGACCTC
CCGAAGGAAATGCAGAGATGACAAGGGAAGAAGAAGGGGAACTGGCAACC
AGTCGAGCACCAAACTTCCTCTTGGCAAGGGTGACGCTCTACAAATGACC
GCTGACCGCTAATAGCTGCTAATCGGGTTGTCCACACGAACGTTTCCGCG
CATGTCCATTCTTGTCGCCCTCTCAACGCCTCGCGTGCTGCTGCTGCTGT
GTGCAACAACTCGTCTCTCTGAAGGCAACAACCGCCTCGTCACTTCCTGG
AGACCCGGCGCGGTGCCTTCACACCACGAGGAGGGGATCGTCTTCGACCG
GAGGGCAGCTGCCGTTCCCTCGGCAACAGGAGCCGCGCCCGACCGGGGGG
GTCACCGCAGCGCTACGAGAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig640:19590..23062+

>mRNA_Ecto-sp13_S_contig640.17164.1 ID=mRNA_Ecto-sp13_S_contig640.17164.1|Name=mRNA_Ecto-sp13_S_contig640.17164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1722bp|location=Sequence derived from alignment at Ecto-sp13_S_contig640:19590..23062+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAAGACATGCTTGAAGAACACCCCGAAGCCCACGCACAATCCGA
GTTTTTCTGTCTCGAGGTGTACGTGGCTGATGTGGAATCATGTTCATTCT
CGCACACAAGCGTCACCCCAACCGTGATCCTGTCTCTCCTCGACTTCGAG
CCTTTGGTGTTCGATCTATCTCCTACAGCACAACGACAAGCACGCAGAAA
ACGAGGACCGGGGTTCCGAGAGGTGCCGCAATGGGAGGAAGAGAACGACC
AGCACGACGGGATTGGAAAGGTCGACTCCACGAACGACACCTTTCGAGCA
TCCAGCGACAGCGCTCAGCATGATTATTACTCTTTCAACAACAGAAAATC
GAAGACAACAGCCACGACAAGAGGGAAGCACACAACAAGCGACGTCGAGA
ACAAAAACGGCCAGCACGATCTGAAGTCGTTCGCCTGCAGCAAAGGGAAG
TCTTGCATTTTCACGGCGAACCCCGTAGGCCTATCCCGGGCCCTCCAGAC
CCAAAGCGCACTCACGTTCCTGGTTGCATCGAAGCTATCCCAGCGCCAGG
CTGCGATACACGGGTCGTGCGCCATCGATCTGTCCGCCTTCGGCCCGAAC
ACCGAGCTCTCTCAATCCCTTCCCCGGGCCGTGTCATGTTGGGGGTACCG
TTCGACTTGCGTGGAATCGAAGGATCTGAAGGGCGCTACGGTGGCCAGGG
CCGGCCTCACCGTTTCTCTCTCCTGCTTGGGGGCAACGGGGTCTTTGATT
CACTTCACTCCGGCATGGACGGAGGCGGCTCCGTATCGGGCTTCCGGCGA
TGGAAGTCCCTCCGCCGTCGTTCCCCCTCGCCCCGACCACTATACTCCTG
ACCGGTCGACGCCAGGCAGACTCCCGGTGGTTCACGAGCAGTGCACAATA
GAGGGTGCACGGCTCGATGGCCAAGCCCGTGGTCACGCTCCCGTGGCGAA
ACAGCCGGGAACCGACCATCCAATGTCCAGGGACACTGAGGCGGGGTCCG
CGCGTTGCGGGGATGGAACAACAAAAAATTGTGGGTCCAGTGCTGGCGGA
ACATCGGCCGGTGCAGAGTGTTGGACCTGCGAGTACAACCCCCGAGATGG
ATGCCTCGTAGGACCCACGTCTTCTGCCGCAGCAGTCGTCGAGCCCACCG
CCGCCGCAACAGCAGCAGGCAGGGACGTTTCTGACGCCTACCTGGGTCCC
AAGCGCGGTGGAGCCGTCTCTCCCGGCGCCCCCTGTCATGCGGTGGAGGA
AGAAACCGGCGCTGCTGCCGCTGTTGTTGGTCCGCCTGGCGATTCCGCAG
GAGCCGAAGCGTACGACAACGACGACGCGGAGACGGACACCAAGACGTCG
CCGGTAAGACTGTCGGTGGCCGCGAGTGTCTCGAAGATCGACTGGATGGG
ATCGCCCGGGAGCGACAGCAGACTGCAAGAGACACCGCTGCAAACAGAGG
GTTGCTGCGGTCTGGATGAGAAGGGGGGCGGGGGGAAGAAACCAGATGAG
ATTGCGGCGACAGAGGAGGAGGGAGTAGCCGGCGCGGGGCAAGGCAGGAA
CAAGGCAGCCCGAAACTTTCCGGGCAACAACCGCCTCGTCACTTCCTGGA
GACCCGGCGCGGTGCCTTCACACCACGAGGAGGGGATCGTCTTCGACCGG
AGGGCAGCTGCCGTTCCCTCGGCAACAGGAGCCGCGCCCGACCGGGGGGG
TCACCGCAGCGCTACGAGAAGA
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