mRNA_Ecto-sp13_S_contig6396.17154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6396.17154.1
Unique NamemRNA_Ecto-sp13_S_contig6396.17154.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: D7FKQ2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ2_ECTSI)

HSP 1 Score: 753 bits (1943), Expect = 1.390e-266
Identity = 388/420 (92.38%), Postives = 395/420 (94.05%), Query Frame = 1
Query:    1 RAEFDADLKQLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYRGPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEETERSSETADGGCWGHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDLARFVRAPVTSAMGVREIRSMKGAKSLHNLGTVACCVRVSLIPFLRYCCGLASPRPLAEESRTAAATERRDLDVNDEGIERNVDLHAPLHSKAHPSTSTAANSNEASWTEPDELRSELEKLAEGSANGSSSKEDIGEEGRPCKGALDEVESPLSESLEQARRVTRLCNTSVAQVVVVLKDFVNGGGR 1260
            RAEFDADLK LAKNLGIEALSTTRA+F LFDDGRGGILHIQDLAAGLTVLCDASMAQFVQ ACRLYRGPDGDS FDDVFGLTLSILKVLHASG ADWPWPGMLPHEVSAVVSS+FFLRKGLPLSGRVTIDWSAFA LEETERSSETA GGCWGHLLQGLRKYD+TVVLGLLSAFVDQSGG+SRPAFVGCMRALFEEDG CVLSAAETMELKISLTRLYQVLDGDR+ TVAFRDLARFVRAPVTS  GVREIRSM  A+SLHNLG VACCVRVSL PFLR+CCGLAS RPL EESRTAAATERRDLDVNDE IERNVDLHA LHSKAHPSTSTAANSNEASWTEPDELR ELEKLAE SANGSSSKED G EGRPCKG LDEVESPLSESLEQARRVTRLCNTSVAQVVVVLKDFVN GGR
Sbjct:   15 RAEFDADLKHLAKNLGIEALSTTRAIFGLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQCACRLYRGPDGDSGFDDVFGLTLSILKVLHASGRADWPWPGMLPHEVSAVVSSDFFLRKGLPLSGRVTIDWSAFAALEETERSSETAGGGCWGHLLQGLRKYDITVVLGLLSAFVDQSGGISRPAFVGCMRALFEEDGCCVLSAAETMELKISLTRLYQVLDGDRMETVAFRDLARFVRAPVTS--GVREIRSMNWAESLHNLGAVACCVRVSLTPFLRFCCGLASSRPLMEESRTAAATERRDLDVNDERIERNVDLHARLHSKAHPSTSTAANSNEASWTEPDELRGELEKLAERSANGSSSKEDTGGEGRPCKGTLDEVESPLSESLEQARRVTRLCNTSVAQVVVVLKDFVNDGGR 432          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: A0A6H5KH67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH67_9PHAE)

HSP 1 Score: 670 bits (1729), Expect = 2.800e-233
Identity = 368/496 (74.19%), Postives = 375/496 (75.60%), Query Frame = 1
Query:   76 MFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYRGPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEETERSSETADGGCWGHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDLA----------------------------------------------------------------------------------------------------RFVRAPVTSAMGVREIRSMKGAKSLHNLGTVACCVRVSLIPFLRYCCGLASPRPLAEESRTAAATERRDLDVNDEGIERNVD-LHAPLHSKAHPSTSTAANSNEASWTEPDELRSELEKLAEGSANGSSSKEDIGEEGRPCKGALDEVESPLSESLEQARRVTRLCNTSVAQVVVVLKDFVNGGGR 1260
            MFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQ ACRLYRGPDGDS FDDVFGLTLSILKVLHASG ADWPWPGMLP EVSAVVSSEFFLRKGLPLSGRVTIDWSA AILEETERSSETADGGCWGHLLQGLRKYD+TVVLGLLSAFVDQSGG+SRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDR+GTVA RDLA                                                                                                    RFV APVTSAMGVRE+RSMKGAKSLHN G VACCVRVSLIPFLRYCCGLAS RPL EESRTAAATERRDLDVNDEGIERNV  LHA LHSKAHPSTSTAANS+EASWTEPDELR  LEKLAEGSANGSSSKE+ G EGRPCKG LDEVESPLSESLEQARRVTRLCNTSVAQVV VL+DFVN GGR
Sbjct:    1 MFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQCACRLYRGPDGDSGFDDVFGLTLSILKVLHASGTADWPWPGMLPQEVSAVVSSEFFLRKGLPLSGRVTIDWSAVAILEETERSSETADGGCWGHLLQGLRKYDVTVVLGLLSAFVDQSGGISRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRMGTVAPRDLASGISLFCGNINNASVRAMFEVYGTVEGSIARDCMRKFLQAVFKVLFHVDPGARVLAGNDPRGERVDPAYLAETATAHAFEDAVLNPDGTLGSEKFHHWYSRFVGAPVTSAMGVRELRSMKGAKSLHN-GAVACCVRVSLIPFLRYCCGLASSRPLMEESRTAAATERRDLDVNDEGIERNVGGLHAQLHSKAHPSTSTAANSDEASWTEPDELRGGLEKLAEGSANGSSSKENTGGEGRPCKGILDEVESPLSESLEQARRVTRLCNTSVAQVVAVLQDFVNEGGR 495          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: A0A3M6VB29_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB29_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.640e-8
Identity = 57/258 (22.09%), Postives = 106/258 (41.09%), Query Frame = 1
Query:   25 KQLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTID----W------------------SAFAILEETERSSETADGGCW---------GHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
            +Q++ +  I      + +++LFD  + GI+ +Q+L AGL++LC  S A   +    LY    DG  + +++     S+ KV+  + P      GM+P +++A+ + E F    +   G++++D    W                  S  ++  E   SS ++                 L GL    +  V  L S  +D    + R  F  C           +LS +E+  +   + R+Y   D ++ G V F +L
Sbjct:  825 RQISLDTQINTQQLLKQLYELFDADKDGIVDVQELGAGLSILCGGSRADRAKAMFTLYDDNHDGCISPEEMTSYLSSVFKVMFTASPDLLSKTGMMPAQLAAITTRECFRGFDVNRDGQLSVDEFRVWFEQQNPYAFYKRACVSNGSKASLPSELIHSSSSSSSEPTTADIIPINVAKKLSGLENMSLDDVSELFSLAIDGGNRILRRIFDKCFYKHICSKNTSMLSESESTRVHEVIDRIYSAFDTEQKGIVGFNEL 1082          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: A0A662WUA9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUA9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.000e-7
Identity = 57/254 (22.44%), Postives = 105/254 (41.34%), Query Frame = 1
Query:   28 QLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTID----W---------------------SAFAILEETERSSETADGGC---WGHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
            ++++++ ++     + +F+LFD  R G++ +Q+L AGL++LC  S     +    LY    DG  + +++     SI +V+  + P      GM P +++ V ++E F        G+++ +    W                     S+ A     E S   A G         L GL+   +  V  L ++ V+    +SR  F  C       +    +SA E+  +   + RL+   D D  G V F +L
Sbjct:  874 RVSRDMQMKTQQLLKELFELFDSDRNGLVDVQELGAGLSILCGGSRDDKAKSMFTLYDVNQDGYISPEEMVSYLTSIFRVMFKASPDLPVKTGMTPEQLAKVTTAECFHAFDHNRDGQLSFEEFRRWFDQQNPRIQHQQTVNGHGESSSSVAGAASLESSEAVASGVIPIEVAKKLSGLKDMPLEKVSELFASAVNGGDQISRRVFDECFYKYISGNSAAKMSAEESTRVHEVIDRLFTAFDTDLNGVVDFNEL 1127          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: K3WY98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WY98_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 1.480e-5
Identity = 56/240 (23.33%), Postives = 92/240 (38.33%), Query Frame = 1
Query:   76 MFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFL----RKGLPLSGRVTIDWS------AFAILEETERSSETADGGCWGHL-------------------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDLA 705
            +F LFD  R G + +Q+L AGL+VLC  S+    +   RLY    DG  + +++      + KVL+ + P      G+   E++   + E F      +   LS     +W       A A  +    S+++                            L GL+   +  V  L S   D+ G ++R AF  C            LS  ++  +   + RL+   D D  G V F +L+
Sbjct:  219 LFVLFDTDRNGTIDVQELGAGLSVLCGGSLEDKARSLFRLYDLNKDGFISPEEMDSYLTGVFKVLYKASPQLESQTGLTSRELATATTQECFQAFDRNRDRQLSFEEFREWLSHHNPLATASPQAQAPSAQSTSSNAVNERSPIQGEATIDVIPIEVAKKLSGLKDIALDKVTELFSTAADKEGRIARQAFDSCFYKYLCSASSAQLSPEDSNRVHEVIDRLFTAFDTDENGFVDFNELS 458          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: H3GGD8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGD8_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 3.540e-5
Identity = 52/241 (21.58%), Postives = 97/241 (40.25%), Query Frame = 1
Query:   70 RAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTID----W------------------SAFAILEETERSSETADGGCWGHL-------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
            + +F+LFD  + G++ +Q+L AGL++LC  S +   +    LY    DG  + +++     S+ KV+  + P      GM+P +++ + + E F        G+++ D    W                  ++         SS++++    G +       L GL    +  V  L ++       +SR  F  C            LS  E+  +   + RL+   D D+ G V F +L
Sbjct:  806 KELFELFDADKNGVVDVQELGAGLSILCGGSRSDKAKSMFTLYDVNHDGYISPEEMSSYLTSVFKVMFKASPELPAKTGMMPEQLAKITTRECFRAFDHNRDGQLSFDEFRVWFEQQNPHNQRPQTANGRRNSLPSAPAASPSSDSSEANTPGVISIEVAKKLSGLEGVSLDEVSELFASATGGGNRISRRIFDECFYKHICTKATPSLSVEESTRVHEVIDRLFTAFDTDQKGIVDFNEL 1046          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: M4BSL2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BSL2_HYAAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.660e-5
Identity = 29/108 (26.85%), Postives = 57/108 (52.78%), Query Frame = 1
Query:   28 QLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFF 348
            Q+++++ I+       +F+LFD  + G++ +Q+L AGL++LC  S A        LY    DG  + D++     S+ K++  + P      GM+P +++ + + E F
Sbjct:  807 QISRDMQIKTQQLLEEIFELFDGNKNGLVDVQELGAGLSILCGGSRADKTNAMFTLYDVNHDGYVSPDEMTSYLTSVFKIMFKASPELLTKTGMVPDQLARMTTRECF 914          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: W2ZEK2_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZEK2_PHYPR)

HSP 1 Score: 57.4 bits (137), Expect = 4.670e-5
Identity = 55/243 (22.63%), Postives = 95/243 (39.09%), Query Frame = 1
Query:   70 RAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEE------------------------TERSSETADGGCWGHL-------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
            + +F+LFD  + G++ +Q+L AGL++LC  S A   +    LY    DG  + +++     S+ KV+  + P      GM P +++   + E F        G+++ D   F +  E                        T  SS ++D    G +       L GL    +  V  + SA       +SR  F  C            LS  ++  +   + RL+   D ++ G V F +L
Sbjct:  848 KELFELFDADKNGVVDVQELGAGLSILCGGSRADKAKSMFTLYDVNHDGYISPEEMTSYLTSVFKVMFKASPELPAKTGMTPEQLAKTTTRECFRAFDHNRDGQLSFD--EFRVWFEQQNPHTQRPQVSNGNSGSRPSAPATTSSSGSSDADASGVIPIEVAKKLSGLEGMSLDEVSEIFSAATGGGKRISRRIFDECFYKHICSKATLGLSVEDSTRVHEVINRLFTAFDSEQKGIVDFNEL 1088          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: W2ZBH8_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZBH8_PHYPR)

HSP 1 Score: 57.4 bits (137), Expect = 4.670e-5
Identity = 55/243 (22.63%), Postives = 95/243 (39.09%), Query Frame = 1
Query:   70 RAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEE------------------------TERSSETADGGCWGHL-------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
            + +F+LFD  + G++ +Q+L AGL++LC  S A   +    LY    DG  + +++     S+ KV+  + P      GM P +++   + E F        G+++ D   F +  E                        T  SS ++D    G +       L GL    +  V  + SA       +SR  F  C            LS  ++  +   + RL+   D ++ G V F +L
Sbjct:  848 KELFELFDADKNGVVDVQELGAGLSILCGGSRADKAKSMFTLYDVNHDGYISPEEMTSYLTSVFKVMFKASPELPAKTGMTPEQLAKTTTRECFRAFDHNRDGQLSFD--EFRVWFEQQNPHTQRPQVSNGNSGSRPSAPATTSSSGSSDADASGVIPIEVAKKLSGLEGMSLDEVSEIFSAATGGGKRISRRIFDECFYKHICSKATLGLSVEDSTRVHEVINRLFTAFDSEQKGIVDFNEL 1088          
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Match: W2Q9D3_PHYPN (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2Q9D3_PHYPN)

HSP 1 Score: 57.4 bits (137), Expect = 4.670e-5
Identity = 55/243 (22.63%), Postives = 95/243 (39.09%), Query Frame = 1
Query:   70 RAMFDLFDDGRGGILHIQDLAAGLTVLCDASMAQFVQYACRLYR-GPDGDSAFDDVFGLTLSILKVLHASGPADWPWPGMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEE------------------------TERSSETADGGCWGHL-------LQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRCVLSAAETMELKISLTRLYQVLDGDRVGTVAFRDL 702
            + +F+LFD  + G++ +Q+L AGL++LC  S A   +    LY    DG  + +++     S+ KV+  + P      GM P +++   + E F        G+++ D   F +  E                        T  SS ++D    G +       L GL    +  V  + SA       +SR  F  C            LS  ++  +   + RL+   D ++ G V F +L
Sbjct:  853 KELFELFDADKNGVVDVQELGAGLSILCGGSRADKAKSMFTLYDVNHDGYISPEEMTSYLTSVFKVMFKASPELPAKTGMTPEQLAKTTTRECFRAFDHNRDGQLSFD--EFRVWFEQQNPHTQRPQVSNGNSGSRPSAPATTSSSGSSDADASGVIPIEVAKKLSGLEGMSLDEVSEIFSAATGGGKRISRRIFDECFYKHICSKATLGLSVEDSTRVHEVINRLFTAFDSEQKGIVDFNEL 1093          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6396.17154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FKQ2_ECTSI1.390e-26692.38EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KH67_9PHAE2.800e-23374.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M6VB29_9STRA7.640e-822.09Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A662WUA9_9STRA4.000e-722.44Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
K3WY98_GLOUD1.480e-523.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3GGD8_PHYRM3.540e-521.58Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
M4BSL2_HYAAE4.660e-526.85Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W2ZEK2_PHYPR4.670e-522.63Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2ZBH8_PHYPR4.670e-522.63Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2Q9D3_PHYPN4.670e-522.63Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6396contigEcto-sp13_S_contig6396:3398..8288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.8
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog42099.EPrPV00000021615
Model size1260
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.Source PGD
EggNOG OGs1MFBP@121069,COG5126@1,KOG0044@2759
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-21_001710.3
Cds size1260
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6396.17154.1prot_Ecto-sp13_S_contig6396.17154.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6396 3398..8288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463884.7865767-CDS-Ecto-sp13_S_contig6396:3397..36581681463884.7865767-CDS-Ecto-sp13_S_contig6396:3397..3658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6396 3398..3658 +
1681463884.8027935-CDS-Ecto-sp13_S_contig6396:3876..40071681463884.8027935-CDS-Ecto-sp13_S_contig6396:3876..4007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6396 3877..4007 +
1681463884.8158653-CDS-Ecto-sp13_S_contig6396:4310..45031681463884.8158653-CDS-Ecto-sp13_S_contig6396:4310..4503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6396 4311..4503 +
1681463884.8277972-CDS-Ecto-sp13_S_contig6396:4652..47001681463884.8277972-CDS-Ecto-sp13_S_contig6396:4652..4700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6396 4653..4700 +
1681463884.8388853-CDS-Ecto-sp13_S_contig6396:5267..53411681463884.8388853-CDS-Ecto-sp13_S_contig6396:5267..5341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6396 5268..5341 +
1681463884.8596158-CDS-Ecto-sp13_S_contig6396:6265..65211681463884.8596158-CDS-Ecto-sp13_S_contig6396:6265..6521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6396 6266..6521 +
1681463884.8764808-CDS-Ecto-sp13_S_contig6396:6667..68651681463884.8764808-CDS-Ecto-sp13_S_contig6396:6667..6865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6396 6668..6865 +
1681463884.885467-CDS-Ecto-sp13_S_contig6396:8189..82881681463884.885467-CDS-Ecto-sp13_S_contig6396:8189..8288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6396 8190..8288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6396.17154.1

>prot_Ecto-sp13_S_contig6396.17154.1 ID=prot_Ecto-sp13_S_contig6396.17154.1|Name=mRNA_Ecto-sp13_S_contig6396.17154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=420bp
RAEFDADLKQLAKNLGIEALSTTRAMFDLFDDGRGGILHIQDLAAGLTVL
CDASMAQFVQYACRLYRGPDGDSAFDDVFGLTLSILKVLHASGPADWPWP
GMLPHEVSAVVSSEFFLRKGLPLSGRVTIDWSAFAILEETERSSETADGG
CWGHLLQGLRKYDMTVVLGLLSAFVDQSGGVSRPAFVGCMRALFEEDGRC
VLSAAETMELKISLTRLYQVLDGDRVGTVAFRDLARFVRAPVTSAMGVRE
IRSMKGAKSLHNLGTVACCVRVSLIPFLRYCCGLASPRPLAEESRTAAAT
ERRDLDVNDEGIERNVDLHAPLHSKAHPSTSTAANSNEASWTEPDELRSE
LEKLAEGSANGSSSKEDIGEEGRPCKGALDEVESPLSESLEQARRVTRLC
NTSVAQVVVVLKDFVNGGGR
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mRNA from alignment at Ecto-sp13_S_contig6396:3398..8288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6396.17154.1 ID=mRNA_Ecto-sp13_S_contig6396.17154.1|Name=mRNA_Ecto-sp13_S_contig6396.17154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6396:3398..8288+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCCGAGTTCGATGCAGACTTGAAGCAATTGGCGAAAAATCTCGGCAT TGAGGCCCTGTCCACGACCCGCGCGATGTTTGATTTGTTCGACGACGGGC GAGGGGGAATCCTTCACATCCAAGATTTGGCTGCAGGGCTGACAGTGCTG TGCGATGCGAGTATGGCACAATTTGTTCAGTACGCTTGCCGACTGTACAG AGGGCCTGACGGTGATTCCGCGTTCGACGACGTTTTTGGACTCACCCTCT CGATTCTCAAGGTATGTGCCTGGTTGCAAGTGGGCAAGCAACACCGCGAA GTGTACACGATCCGCATGCCACGAGTTGTACGAGTCTATTGCACTCGGAT TTCCTGGTTGACGCCGCGTGTGTCGTGCAACACAACCATGCAACGAAGAT ATTGCGGAGACGAACAAGTTAGATCCCTCCTGTACTTCCAGCACTTCAAA TAGAAGAAATCTGGATTTTTCTCCCGTAGGTTCTCCACGCATCTGGCCCC GCAGACTGGCCTTGGCCAGGGATGCTACCGCACGAGGTCTCCGCCGTTGT TTCATCGGAGTTCTTCCTTCGCAAGGGGTTACCACTGAGTGGACGCGTTA CGATCGACTGGTGAGAGCCCACCGCCCTTTCGACGCCAGACAATCGACCA TTCGTTTGTTTCTTCCTCTGTGTTTGCAGCCCCCTAAGTTGTGGAAGATC CATGAAGTTACGCTAATGCATGCTTCGGATTGCTTAGATTTTCTACAGGA ATTGTGTTTGCATCTCAAGTATCGAGTCGTGCATGCACCCGTTGGTTGGT AGTGTCGAAAGCTGACGATAGAAGAAATCAATGCGATGCGAGACTTCAAG CCATGATCACAACGCCCGTCACCAGTTGAAGTATGGTTACTTTCATTCCC CTGCTTGGTTCAGGTCTGCCTTTGCTATCCTGGAGGAAACCGAAAGGAGC AGTGAAACGGCAGACGGCGGGTGTTGGGGACACTTACTGCAAGGTCTTCG GAAATACGACATGACGGTTGTTCTCGGATTGTTGTCGGCGTTCGTGGACC AGAGCGGCGGAGTTTCTCGACCGGCTTTTGTTGGATGCATGCGGGCATTG TTTGAGGTAAGCCCTTTTTTCGTAAGCGTCTGTCGACGTATATTACCGAG TCGAAATAGCATAGGGGGCAAAGAAAATATTCACATCAGTGTAATTTATT CCCTTTGTGACTCGGATGTGTCCTCCGTGCGTCTACCTGATGTGTACTGG TACAGGAGGACGGGCGCTGCGTCCTTTCCGCCGCGGAAACGATGGAGCTC AAGGTAGAGATACATGACTTCCTCTTAGCCCCCTTCGGCTATCGCCGAGA CGACATGCAAGAAGAGCATCCTGAGGGTCCTGTTCGATTGGAATATGTTC GATTGGAATGTGGTTGTGACCTGGCAAGCCGTCTATTGTATGTGGTAACT AACGTAGGGAGTGAATCCCACCGAAGCGAGCTCTTCCTGCTGCTCGTACC TGGTACTGAAAGAGCGCTTGCTCGTGAGTACACTCGAAGCAACGAACTGC TGAAGCTGTTCGTGAAGAAAATGGCGGGAAGCGTCAGAAAAGATCCTTGG TGTGGCCCCGGGTGGGAGCTCTTCATTTTGCAGCAAGACCATACCCTAGG CACAAAACTTCGAGCAAAGGTCAACAAATGGGATTGCGAAGAAATAGTGA TGCGCAACTTCGAGATGGTCAATATTACCGCGGTAGGGAGATGCTCTTAC CACTGTCGCCTCCTGCATCCCGCCCTACGACAGGATGGAGGGTGCTGGGT ATGTGAAGACTGGTATTTCTGAGTTTGTTTTCTGTCGTCCATGCATCTGA CGTTTCCCGGGTGTTGGCAGATAAGTCTAACGCGACTGTACCAAGTTTTA GACGGCGATCGAGTGGGGACCGTGGCCTTCAGAGATCTGGCCAGGTGAGC GATGGAGAATAGAAGCTTCGTTGTCACGTACGATAACGCTAGATGGGCCA AGCTGCCTGTGTCTCACTACTCGCGAAGTGGTAAGATGGCAAGGGATGCT TCCCTCTCTTACCCATTCAGTCAGGTCTAGGCAGAAATCTGATTTATTTG TAGGTTTTAAGCAGGGATTTATCCCGTTGGGACTGGTCCTCCCATCTTAT CATTCGGATTTGAGGTAGCTTTGACCCAAATTCCCTCAATTGACGACCAT AAACAAGCAGCGGTATCAGTTTATTCTGTGGAAACATCAACGATGCAAGT GTACGGGCGATGTTCGAAGTCTACGGGACTGCGGAGGGCTCCATCGCACG AGACTGCATGCGGAAGTTTCTACAGGCGGTTTTCAAGGTGCGGTCACGAC TCGATCTCCGATTGTCGCTTAAGAGTTGTTCAAGAAAGCCACTGAGTAAT TCACCCGTATGTGACTGGGGTATTTCAGCAACCTCGGCGTCATCGTCGAT GCCCTTGTTTCGCACTCTCTCAGGTATTGTTTTACGTGGACCCAGGAGCA CGTGTTCTTGCGGGGAATGACGGAAGGGGAGAGCGCGTGGATCCTGCATA TTTAGCTGAAACGGCCACTGCTCACGCGTTTGAGGATGCGGTGTTAAACC CAGATGGAACGCTGGGCAGCGAAAATTTCCACCACTGGTACTCGAGGTAG AGCAACACATGGGCAGGCAAATAACGCCAAATCTACTTCTTTGTGTCGAT CCAAGAATGCAAGATTTTTTTAGGACAAAGGTTTTGGCAATGACAAAGAA GTGCGTGTGTAAGACACATTCGTCGGAGCTCTCTCGCTCATTACATACCT GGATTTCTGTTTATGCGCCCGTGTGTCCCCACTGCTGTGCCATACCATGT TTTATACGCGCCGAACAGATTCGTCCGGGCACCAGTAACTTCGGCCATGG GCGTGAGGGAAATACGTTCCATGAAGGGGGCCAAATCACTTCATAACTTG GGCACAGTTGCATGCTGCGTGAGGGTTTCGTTGATACCTTTCCTCCGCTA CTGCTGTGGCCTGGCGAGTCCCCGACCTCTCGCGGAAGAATCTCGCACAG CAGCAGCGACGGAAAGGAGAGACTTGGACGTGAATGATGAGGGAATAGAG CGGAACGTCGACCTTCATGCACCGGTAAGCGGGTTAGTGGTGAGAGACGT TTACGGTGTCGTTGAAATGTGCCAAATACTAGCCTAGGGGCCCATCTTGT ATGTGTTCCCCATGCCTCCATGCAAAATTTAGCGCATTCTGACCTTGCTG TATATTTTACTATGCTGCAGCTCCATTCGAAAGCGCATCCGAGCACAAGC ACTGCGGCGAACTCGAATGAGGCTTCCTGGACGGAACCGGATGAGTTGCG GAGTGAGCTGGAAAAACTTGCTGAAGGCTCGGCCAATGGCTCATCTTCCA AGGAGGACATAGGGGAAGAAGGTCGCCCGTGCAAGGGAGCTCTCGATGAG GTCGAATCCCCTCTTTCGGTGGGTGTTGCGCTGTTCCGAACCCCCATTGC CCGTACGGATCGCATCCGCCAAGTACGTTTTGGTGTGCTTTTCCTTGGCA TCATCGTACTGCTGCTGGACCAGATTTATGTGTTCCATTCCAAGTGCTAC GCTACGAATTACCATGGGCCCCTGTGCTCGAGGTTCTATATTCACTTTTT GTATGTGAAGTAATGTGGATGTATGTGTATGTATGCAATCTGCGGTAGTG AGTTTATGGTGCAGTAGTACCGTAGACGACACAACATAACACGCCCACAT AAAAAACCATACCCCCCACAGAATACGACACCCCGGTGATAATTATGGGC GTTTCTGCCAAACCATCGAATCGTCACCCAGGCTACGTAAAACAACACGC CTCCTGAGGTTGCGCCGTATACATTCACGGGGCCCCTCCTTCTATCACAG GGGTGATACAGCATCTGCCCCGTGGGCATCGCACACGCACCCATCATCGG CGTGCGGAGAAACACCCCGCATGGAGGCCTCCAACAACATGAACGTGCAG GGAGAGCAGAATGCCGCCGCAAGTACCCCCGCTTCTTCCACAATTGCTTC GACCGCAGCAGTACAAGCGCCACAGCTCACCTCGTCGTTTCAACGCGAGC GAGCACACTTCTTCTACGCAAGCGGCTCCTGCCACGGCTCGTCCCCCTGC TGCTGATGATTTGACAGCAGCAGCAGCAGCTGGCACAGCAACAGGCGCCA AGACGACCACCGCATTACCTCACCAGCAGCAGCCACACCCCTTCAAGTGT GCGGCGGAAGCGGCTCAACTCTACAATCAGTATTACTGTATCACCCCGCC TTTTGATCACACCCCCAAACACACCCTGTGGGTTTTCGGACGTGCTATCA AACCCCCTGGTTTATAACACCCTTTAGGGGCCCCTGCGAGCTGCACGTTA TCACCCGGGCTACACAAGATACGACACCCCCCACGGGATGCCACACCCGG TGATAATATTTTTAAAGCCCAAAATGTTATCACCGGGGTGTGTCATCTAG TATCGTCTACGGTGTATGCATTCCTGCCGAATTTTCTCACGAGAGCCGCC CAACCTCTCGTGGTCACTCGACGGGGCGACGGGGCGACGATACTTGACAG TGGGAATCGAATGGTACCGCGCTTGCATGGGCTTTGCACCTCACTGCATC ACTCCGCAATGACACGCAATGTGCTTTTAGTGTACTAGTTATTGTGCTGG GTTTCGCTTTGCTCTGCTTTCTCTACCTTTACCTCTCGTTGGGCTGCGAC ACGCCGTCGGCCGTTCCTTTGTCCCGTGGATCTCTCCCGTAGGAGAGTTT GGAGCAAGCGCGGCGAGTCACGCGGTTGTGCAATACCTCAGTTGCGCAGG TTGTTGTAGTTTTAAAAGACTTCGTGAATGGCGGAGGACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6396:3398..8288+

>mRNA_Ecto-sp13_S_contig6396.17154.1 ID=mRNA_Ecto-sp13_S_contig6396.17154.1|Name=mRNA_Ecto-sp13_S_contig6396.17154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6396:3398..8288+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCCGAGTTCGATGCAGACTTGAAGCAATTGGCGAAAAATCTCGGCAT
TGAGGCCCTGTCCACGACCCGCGCGATGTTTGATTTGTTCGACGACGGGC
GAGGGGGAATCCTTCACATCCAAGATTTGGCTGCAGGGCTGACAGTGCTG
TGCGATGCGAGTATGGCACAATTTGTTCAGTACGCTTGCCGACTGTACAG
AGGGCCTGACGGTGATTCCGCGTTCGACGACGTTTTTGGACTCACCCTCT
CGATTCTCAAGGTTCTCCACGCATCTGGCCCCGCAGACTGGCCTTGGCCA
GGGATGCTACCGCACGAGGTCTCCGCCGTTGTTTCATCGGAGTTCTTCCT
TCGCAAGGGGTTACCACTGAGTGGACGCGTTACGATCGACTGGTCTGCCT
TTGCTATCCTGGAGGAAACCGAAAGGAGCAGTGAAACGGCAGACGGCGGG
TGTTGGGGACACTTACTGCAAGGTCTTCGGAAATACGACATGACGGTTGT
TCTCGGATTGTTGTCGGCGTTCGTGGACCAGAGCGGCGGAGTTTCTCGAC
CGGCTTTTGTTGGATGCATGCGGGCATTGTTTGAGGAGGACGGGCGCTGC
GTCCTTTCCGCCGCGGAAACGATGGAGCTCAAGATAAGTCTAACGCGACT
GTACCAAGTTTTAGACGGCGATCGAGTGGGGACCGTGGCCTTCAGAGATC
TGGCCAGATTCGTCCGGGCACCAGTAACTTCGGCCATGGGCGTGAGGGAA
ATACGTTCCATGAAGGGGGCCAAATCACTTCATAACTTGGGCACAGTTGC
ATGCTGCGTGAGGGTTTCGTTGATACCTTTCCTCCGCTACTGCTGTGGCC
TGGCGAGTCCCCGACCTCTCGCGGAAGAATCTCGCACAGCAGCAGCGACG
GAAAGGAGAGACTTGGACGTGAATGATGAGGGAATAGAGCGGAACGTCGA
CCTTCATGCACCGCTCCATTCGAAAGCGCATCCGAGCACAAGCACTGCGG
CGAACTCGAATGAGGCTTCCTGGACGGAACCGGATGAGTTGCGGAGTGAG
CTGGAAAAACTTGCTGAAGGCTCGGCCAATGGCTCATCTTCCAAGGAGGA
CATAGGGGAAGAAGGTCGCCCGTGCAAGGGAGCTCTCGATGAGGTCGAAT
CCCCTCTTTCGGAGAGTTTGGAGCAAGCGCGGCGAGTCACGCGGTTGTGC
AATACCTCAGTTGCGCAGGTTGTTGTAGTTTTAAAAGACTTCGTGAATGG
CGGAGGACGC
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